| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318734
Identifier: 158318734
GI number: 158318734
Start: 8540033
End: 8541691
Strand: Direct
Name: 158318734
Synonym: Franean1_7005
Alternate gene names: NA
Gene position: 8540033-8541691 (Clockwise)
Preceding gene: 158318733
Following gene: 158318735
Centisome position: 95.08
GC content: 68.23
Gene sequence:
>1659_bases ATGAGTCACGCGCTTCACCACGCCCTTGAGCCGAGTGCCGAATACAATGTCGACCTGACGGTGACTGCCGGGCGCTGGCC CGACGGGCTGGCCGGGAACATCTTCGTCATCGGGCCGTCGCAGCCGACCGCCGTCGACTTCATGTTCGCCGGGCCGGGCC TGCTCACCCATGTGGACCTCGAGACCAGGCACTGGCGGACGAAGCGGGTCGTCACGCCCGACCTGGCTCTTCTCGGCGGC CTCAGCCGGGCGTTGCCACCGGCCGAGCTGGCGGGACTGACCGTCGGCGGACGGCCGTCCCTGACGAACGTGTCGCCGCA CTTCTTCGGCGACCGGCTACTGCTCACCGGGCTGAGCCAGCGGCCGGTCGAGTTCGACCCGGCGACTTTGGAGTTCAAGA CGTTTCTCGGCGGGGTCAGCGAATACCCCGAGGTCGTCGCGCATCCCCTGTTCCCCGGTGTGCGGACGGCGGCGCACCCG GTCGAGGACCTCGACGACGGTTGCATGTGGTGGTGCAACACGAACCTCCGTCCCCGGGGTTCGTCCACCTCCGACATGGA GGGACCCATGTGGGTGGTGCGCTGGGACGGGCACGGCGACGTCGAGACGTGGCACGTACCCGGCGCGCACCTGACCCAGG GCGTGCACGAGATGACAGTGACCCAGGACTACGTGATCTTCACGGAGATCGGGTTCCAGCCCGAGCCCGGCACCGTCGCC GGACGCGGCCGCACCAAACCGCATCTGCCCTTCACCGACATCTATCTGGTGGGCAAGCGCGACCTCACCGTCGCCCGGCG GGGCCGCAGCGTGCCGGTGGCCCACGCCCGCGTCCCACGCGAGTCGTTCCACCACTTCGCCGACTACCGCCAGGACGGCG ACGACGTCACGATGTACCTCGCTCATTCGAACGGCTGGGATCTCAACTACGTGCTCACCGATGCCGACAGCGTCTGGGGA ACCGGCTCCGGCCTCGCCAAGGGCCTGCACGGCTTCGTCTCCGCCCCGGTGGACGCTTCACCGGTCGGCCGCTACGTGAT CGACGGCCGAACCGGTGAGGTCAGGGACAGCCATGTCTTCCTCGACCCGGAACGCCACTGGGCCACGCTTCTCTATGGCC GTGACATGCGGCGGCCGGGGCTCGAGCGCGGCCGCTACCTGTGGCAGTCCTACTGGGGATGCGACACCGAGATGCTGGCG ACCCGGATCGTCGAGATGTACCGGGATCACCCCTATCGCGTTGTCCCGGTGGACCAGTTGCCGTCACGGGAGATCCCGTC GTCCCTGGTGTGCATTGACCTGGAGACGATGACCGAACAGTCGGCCTGGTCATTCCCCGCCGGCACCACCAGCGAGTCAC CCGTGTTCGTTCCCGACCCCGCGGGCGGCCCCGGCTGGGCGGTGATTTTTGTCCACTACTCCGACCGGACCGAACTTCAG GTGTTCGACGCCCTGGCTCTCGGCGCGGGGCCCGTCGCCGTCGCCACCGCCGAGGGCCTCAAACTGTCCGTCCAGTTCCA CTCCGCTTATCTGCCCAGCATCCGTCTACGTGACACGGGCTACGAACGTTCGTTCGCGGCCGACCTCGGCGACGGCTGGC GGGATTTCTCGCCGTCCGCCCGCGGTGTGATCAGTAAGGTGCTCGAGCGGTACGGCTGA
Upstream 100 bases:
>100_bases AGAACCGCGCCTCGCTCCCCGGCAAAATCCGCACCGGGCATCGGCAATCGCGACCGAGTTCTGAATTCAGCTCACCGAGC CGAACTCCGAAGGAAACGAC
Downstream 100 bases:
>100_bases GCGGAGGTTCGACCTCGATCCCGCCGAGCTGCCCGCCCACCTCGCCGAACGTGGCCTGACCAGGCTGCGCCTGGCGCGCG TCTTTACGAGGGCGGCAGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 552; Mature: 551
Protein sequence:
>552_residues MSHALHHALEPSAEYNVDLTVTAGRWPDGLAGNIFVIGPSQPTAVDFMFAGPGLLTHVDLETRHWRTKRVVTPDLALLGG LSRALPPAELAGLTVGGRPSLTNVSPHFFGDRLLLTGLSQRPVEFDPATLEFKTFLGGVSEYPEVVAHPLFPGVRTAAHP VEDLDDGCMWWCNTNLRPRGSSTSDMEGPMWVVRWDGHGDVETWHVPGAHLTQGVHEMTVTQDYVIFTEIGFQPEPGTVA GRGRTKPHLPFTDIYLVGKRDLTVARRGRSVPVAHARVPRESFHHFADYRQDGDDVTMYLAHSNGWDLNYVLTDADSVWG TGSGLAKGLHGFVSAPVDASPVGRYVIDGRTGEVRDSHVFLDPERHWATLLYGRDMRRPGLERGRYLWQSYWGCDTEMLA TRIVEMYRDHPYRVVPVDQLPSREIPSSLVCIDLETMTEQSAWSFPAGTTSESPVFVPDPAGGPGWAVIFVHYSDRTELQ VFDALALGAGPVAVATAEGLKLSVQFHSAYLPSIRLRDTGYERSFAADLGDGWRDFSPSARGVISKVLERYG
Sequences:
>Translated_552_residues MSHALHHALEPSAEYNVDLTVTAGRWPDGLAGNIFVIGPSQPTAVDFMFAGPGLLTHVDLETRHWRTKRVVTPDLALLGG LSRALPPAELAGLTVGGRPSLTNVSPHFFGDRLLLTGLSQRPVEFDPATLEFKTFLGGVSEYPEVVAHPLFPGVRTAAHP VEDLDDGCMWWCNTNLRPRGSSTSDMEGPMWVVRWDGHGDVETWHVPGAHLTQGVHEMTVTQDYVIFTEIGFQPEPGTVA GRGRTKPHLPFTDIYLVGKRDLTVARRGRSVPVAHARVPRESFHHFADYRQDGDDVTMYLAHSNGWDLNYVLTDADSVWG TGSGLAKGLHGFVSAPVDASPVGRYVIDGRTGEVRDSHVFLDPERHWATLLYGRDMRRPGLERGRYLWQSYWGCDTEMLA TRIVEMYRDHPYRVVPVDQLPSREIPSSLVCIDLETMTEQSAWSFPAGTTSESPVFVPDPAGGPGWAVIFVHYSDRTELQ VFDALALGAGPVAVATAEGLKLSVQFHSAYLPSIRLRDTGYERSFAADLGDGWRDFSPSARGVISKVLERYG >Mature_551_residues SHALHHALEPSAEYNVDLTVTAGRWPDGLAGNIFVIGPSQPTAVDFMFAGPGLLTHVDLETRHWRTKRVVTPDLALLGGL SRALPPAELAGLTVGGRPSLTNVSPHFFGDRLLLTGLSQRPVEFDPATLEFKTFLGGVSEYPEVVAHPLFPGVRTAAHPV EDLDDGCMWWCNTNLRPRGSSTSDMEGPMWVVRWDGHGDVETWHVPGAHLTQGVHEMTVTQDYVIFTEIGFQPEPGTVAG RGRTKPHLPFTDIYLVGKRDLTVARRGRSVPVAHARVPRESFHHFADYRQDGDDVTMYLAHSNGWDLNYVLTDADSVWGT GSGLAKGLHGFVSAPVDASPVGRYVIDGRTGEVRDSHVFLDPERHWATLLYGRDMRRPGLERGRYLWQSYWGCDTEMLAT RIVEMYRDHPYRVVPVDQLPSREIPSSLVCIDLETMTEQSAWSFPAGTTSESPVFVPDPAGGPGWAVIFVHYSDRTELQV FDALALGAGPVAVATAEGLKLSVQFHSAYLPSIRLRDTGYERSFAADLGDGWRDFSPSARGVISKVLERYG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60872; Mature: 60741
Theoretical pI: Translated: 5.92; Mature: 5.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHALHHALEPSAEYNVDLTVTAGRWPDGLAGNIFVIGPSQPTAVDFMFAGPGLLTHVDL CCCHHHHHCCCCCCCEEEEEEECCCCCCCCCCCEEEECCCCCCEEEEEEECCCEEEEEEC ETRHWRTKRVVTPDLALLGGLSRALPPAELAGLTVGGRPSLTNVSPHFFGDRLLLTGLSQ CCCCCEECEECCCCHHHHHHHHHCCCCHHHHEEEECCCCCCCCCCCHHCCCEEEEECCCC RPVEFDPATLEFKTFLGGVSEYPEVVAHPLFPGVRTAAHPVEDLDDGCMWWCNTNLRPRG CCCCCCCCEEEHHHHHCCHHHHHHHHHHCCCCCCHHHCCCHHHCCCCEEEEECCCCCCCC SSTSDMEGPMWVVRWDGHGDVETWHVPGAHLTQGVHEMTVTQDYVIFTEIGFQPEPGTVA CCCCCCCCCEEEEEECCCCCCEEEECCCHHHHCCHHHHEECCCEEEEEEECCCCCCCCEE GRGRTKPHLPFTDIYLVGKRDLTVARRGRSVPVAHARVPRESFHHFADYRQDGDDVTMYL CCCCCCCCCCCEEEEEECCCCEEHHHCCCCCCCHHHCCCHHHHHHHHHHHCCCCCEEEEE AHSNGWDLNYVLTDADSVWGTGSGLAKGLHGFVSAPVDASPVGRYVIDGRTGEVRDSHVF EECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCEEE LDPERHWATLLYGRDMRRPGLERGRYLWQSYWGCDTEMLATRIVEMYRDHPYRVVPVDQL ECCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCC PSREIPSSLVCIDLETMTEQSAWSFPAGTTSESPVFVPDPAGGPGWAVIFVHYSDRTELQ CCCCCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCEE VFDALALGAGPVAVATAEGLKLSVQFHSAYLPSIRLRDTGYERSFAADLGDGWRDFSPSA EEEHHHCCCCCEEEEEECCEEEEEEEECCCCCCEEEECCCCCCHHHHHCCCCCCCCCCCH RGVISKVLERYG HHHHHHHHHHCC >Mature Secondary Structure SHALHHALEPSAEYNVDLTVTAGRWPDGLAGNIFVIGPSQPTAVDFMFAGPGLLTHVDL CCHHHHHCCCCCCCEEEEEEECCCCCCCCCCCEEEECCCCCCEEEEEEECCCEEEEEEC ETRHWRTKRVVTPDLALLGGLSRALPPAELAGLTVGGRPSLTNVSPHFFGDRLLLTGLSQ CCCCCEECEECCCCHHHHHHHHHCCCCHHHHEEEECCCCCCCCCCCHHCCCEEEEECCCC RPVEFDPATLEFKTFLGGVSEYPEVVAHPLFPGVRTAAHPVEDLDDGCMWWCNTNLRPRG CCCCCCCCEEEHHHHHCCHHHHHHHHHHCCCCCCHHHCCCHHHCCCCEEEEECCCCCCCC SSTSDMEGPMWVVRWDGHGDVETWHVPGAHLTQGVHEMTVTQDYVIFTEIGFQPEPGTVA CCCCCCCCCEEEEEECCCCCCEEEECCCHHHHCCHHHHEECCCEEEEEEECCCCCCCCEE GRGRTKPHLPFTDIYLVGKRDLTVARRGRSVPVAHARVPRESFHHFADYRQDGDDVTMYL CCCCCCCCCCCEEEEEECCCCEEHHHCCCCCCCHHHCCCHHHHHHHHHHHCCCCCEEEEE AHSNGWDLNYVLTDADSVWGTGSGLAKGLHGFVSAPVDASPVGRYVIDGRTGEVRDSHVF EECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCEEE LDPERHWATLLYGRDMRRPGLERGRYLWQSYWGCDTEMLATRIVEMYRDHPYRVVPVDQL ECCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCC PSREIPSSLVCIDLETMTEQSAWSFPAGTTSESPVFVPDPAGGPGWAVIFVHYSDRTELQ CCCCCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCEE VFDALALGAGPVAVATAEGLKLSVQFHSAYLPSIRLRDTGYERSFAADLGDGWRDFSPSA EEEHHHCCCCCEEEEEECCEEEEEEEECCCCCCEEEECCCCCCHHHHHCCCCCCCCCCCH RGVISKVLERYG HHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA