| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is cutR [H]
Identifier: 158318678
GI number: 158318678
Start: 8463761
End: 8464420
Strand: Direct
Name: cutR [H]
Synonym: Franean1_6946
Alternate gene names: 158318678
Gene position: 8463761-8464420 (Clockwise)
Preceding gene: 158318676
Following gene: 158318679
Centisome position: 94.23
GC content: 71.67
Gene sequence:
>660_bases GTGCGGATCCTGGTGGTCGAGGACGAGGCGATGCTGGCCGAGGCCATCGCCGAGGGCCTCCGCCAGCGGGCCATGGCGGT GGACACCTGCGGGGACGGGGCCAGCGCTCTGGAACTGGCCACGCTCCATCCCTACGACGTGATCGTGCTCGACCGGGATC TGCCCGCGGTGCACGGCGACGACGTGTGCCGGGCCGTGGTGGCCGCCGGCGGCGACACCCGGGTCATCATGCTGACCGCC GCCGGGGACATCGCCGACCGGGTCCACGGGTTCGGGGTGGGGGCCGACGACTATCTGACCAAGCCGTTCGCGTTCGCCGA GCTCGTCGCCCGGGTTCAGGCACTGGGTCGACGGGCCCGTGCCGCGGTGCCGCCGGTCCTGACCCGCGCCGGCGTCGAGT TGGACGTGCCGAGGCACCAGGTGTCGCGGGACGGCCGTTTTGTCCCGCTGTCCCGCAAGGAGTTCGCCGTCCTGGAGGTC CTCATGCGGGCCGACGGGTCCGTGGTCAGCGCCGAGGAGCTCTTGGAGAAGGCTTGGGATTCCAACGTCGACCCCTTCAC CAACGCCGTACGGATGGCGGTGATGACGTTGCGCCGCAAGCTGGGGCCGCCCCCGCTGATCGAGACGGTCGCCGGGGTCG GGTACCGCATGAAGGGCTGA
Upstream 100 bases:
>100_bases CAGATCTAGTGAACGGGCGATCCGGGTTCCGTAAGCGTCGCCCCTTACGCTTTCTTTATGGCCCGCTGCCGATGATCGAC GTGAGCGGAGAGGCGGTCGC
Downstream 100 bases:
>100_bases GGAGACCCCGGCCGGTCGCGATGTCGGTCAGGATCCGGCTCGCGCTGATGTGCGGTGGCCTGTTTCTCCTCAGTGGCGTG GTGCTGCTGGCCGTCAACTA
Product: two component transcriptional regulator
Products: NA
Alternate protein names: Defective melC1 suppressor protein [H]
Number of amino acids: Translated: 219; Mature: 219
Protein sequence:
>219_residues MRILVVEDEAMLAEAIAEGLRQRAMAVDTCGDGASALELATLHPYDVIVLDRDLPAVHGDDVCRAVVAAGGDTRVIMLTA AGDIADRVHGFGVGADDYLTKPFAFAELVARVQALGRRARAAVPPVLTRAGVELDVPRHQVSRDGRFVPLSRKEFAVLEV LMRADGSVVSAEELLEKAWDSNVDPFTNAVRMAVMTLRRKLGPPPLIETVAGVGYRMKG
Sequences:
>Translated_219_residues MRILVVEDEAMLAEAIAEGLRQRAMAVDTCGDGASALELATLHPYDVIVLDRDLPAVHGDDVCRAVVAAGGDTRVIMLTA AGDIADRVHGFGVGADDYLTKPFAFAELVARVQALGRRARAAVPPVLTRAGVELDVPRHQVSRDGRFVPLSRKEFAVLEV LMRADGSVVSAEELLEKAWDSNVDPFTNAVRMAVMTLRRKLGPPPLIETVAGVGYRMKG >Mature_219_residues MRILVVEDEAMLAEAIAEGLRQRAMAVDTCGDGASALELATLHPYDVIVLDRDLPAVHGDDVCRAVVAAGGDTRVIMLTA AGDIADRVHGFGVGADDYLTKPFAFAELVARVQALGRRARAAVPPVLTRAGVELDVPRHQVSRDGRFVPLSRKEFAVLEV LMRADGSVVSAEELLEKAWDSNVDPFTNAVRMAVMTLRRKLGPPPLIETVAGVGYRMKG
Specific function: Member of the two-component regulatory system CutS/CutR, involved in the regulation of copper metabolism. CutR suppresses a defective melC1 gene, encoding a putative copper-transfer gene, probably by altering copper metabolism [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1786784, Length=222, Percent_Identity=40.5405405405405, Blast_Score=159, Evalue=1e-40, Organism=Escherichia coli, GI1789402, Length=217, Percent_Identity=39.1705069124424, Blast_Score=141, Evalue=3e-35, Organism=Escherichia coli, GI87082012, Length=218, Percent_Identity=37.6146788990826, Blast_Score=135, Evalue=2e-33, Organism=Escherichia coli, GI1790860, Length=223, Percent_Identity=34.5291479820628, Blast_Score=120, Evalue=6e-29, Organism=Escherichia coli, GI1786599, Length=222, Percent_Identity=36.4864864864865, Blast_Score=110, Evalue=6e-26, Organism=Escherichia coli, GI1790552, Length=217, Percent_Identity=33.6405529953917, Blast_Score=108, Evalue=3e-25, Organism=Escherichia coli, GI1788394, Length=226, Percent_Identity=33.1858407079646, Blast_Score=104, Evalue=5e-24, Organism=Escherichia coli, GI1787375, Length=218, Percent_Identity=30.2752293577982, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI2367329, Length=228, Percent_Identity=34.6491228070175, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI1789809, Length=225, Percent_Identity=29.3333333333333, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1787229, Length=221, Percent_Identity=33.4841628959276, Blast_Score=94, Evalue=7e-21, Organism=Escherichia coli, GI1786911, Length=224, Percent_Identity=32.5892857142857, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1790863, Length=231, Percent_Identity=27.2727272727273, Blast_Score=80, Evalue=8e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR001867 - InterPro: IPR001789 - InterPro: IPR011991 [H]
Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]
EC number: NA
Molecular weight: Translated: 23510; Mature: 23510
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRILVVEDEAMLAEAIAEGLRQRAMAVDTCGDGASALELATLHPYDVIVLDRDLPAVHGD CEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEEEECCCCCCCCCH DVCRAVVAAGGDTRVIMLTAAGDIADRVHGFGVGADDYLTKPFAFAELVARVQALGRRAR HHHHHHHHCCCCCEEEEEEECCHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHH AAVPPVLTRAGVELDVPRHQVSRDGRFVPLSRKEFAVLEVLMRADGSVVSAEELLEKAWD HCCCHHHHHCCCEECCCHHHHCCCCCEECCCCHHHHHHHHHHHCCCCEECHHHHHHHHHC SNVDPFTNAVRMAVMTLRRKLGPPPLIETVAGVGYRMKG CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEECCC >Mature Secondary Structure MRILVVEDEAMLAEAIAEGLRQRAMAVDTCGDGASALELATLHPYDVIVLDRDLPAVHGD CEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEEEECCCCCCCCCH DVCRAVVAAGGDTRVIMLTAAGDIADRVHGFGVGADDYLTKPFAFAELVARVQALGRRAR HHHHHHHHCCCCCEEEEEEECCHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHH AAVPPVLTRAGVELDVPRHQVSRDGRFVPLSRKEFAVLEVLMRADGSVVSAEELLEKAWD HCCCHHHHHCCCEECCCHHHHCCCCCEECCCCHHHHHHHHHHHCCCCEECHHHHHHHHHC SNVDPFTNAVRMAVMTLRRKLGPPPLIETVAGVGYRMKG CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12000953 [H]