| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318623
Identifier: 158318623
GI number: 158318623
Start: 8395447
End: 8396610
Strand: Reverse
Name: 158318623
Synonym: Franean1_6891
Alternate gene names: NA
Gene position: 8396610-8395447 (Counterclockwise)
Preceding gene: 158318624
Following gene: 158318622
Centisome position: 93.48
GC content: 69.07
Gene sequence:
>1164_bases ATGGCCGTTCCGAAGGCGACGGCTGTTCCGAGGGCGCCCAAGGCGCGCGAGCCCGCCGAAGAGCTGGACATGTTGGTCGG CGAGGTCCGTACCACCCTGCTGCAGAACTCCCACCGCGTCGGCGCCACCACCGTCGCCGCGCTGCTGGACATCGTGCCGG GAGGCCGGGTCCGCAGCGCTACCAGGCCCGTCGCCCATGCGTTCTCGCCCGACGTACGGGTGGGCGTGCACTGCCCGCTC GCCACCATCTCGGGCACCAGAGCAGACGGTGCGGGAACGGCCGTGGCCCGAGCGTCCGTCACCGGGGGCACAGTCCTGCA GGCCTCCACCCGGGCCAGGCTCACCCGAGCCGCGGGCGAGCGCAGACTGCCGTGGTCGCACTATGTGGCGAACCCGGGGA TAATCGAGGTCGCCGGGCGCACTGACACGGACGACCTGGCTGCGGGATTCCTGACAACACAGACCCGGGCATCCCTCGAT CTCGGCGCGGTCAGCAGCCGATTGCTCAGCCGCGTTCAGCGCAGGCCGGGTATCGACCGAGTCACCTCGTTGCGGGCGCG CCGAACGCAACTACGATTCGCCGTCACCTGGCGGTCTTCTGATTCGGCCGTGCTGCCACAATTATTGGGTGCGCAGCGGA GGATTTCCGATTTCCCCTCGGTCCCCACCGGGTCGGCGGAGTCGTTTCACCGGAACAGCGAGCCGGCTGCTTCCGTCTCA CCGGTGAGCGTCGAGTTCACCATCCAGGATGAAACGCTGCGTACGCTGCGGCTGCGGCTCGGGAGATGCGATCCGTCCGA CGTCGTGGCCGCGTGCGAGGACCTCGCCCTTCACGACTGGCTGCTTTCCACGGTGGAGTCTCTGCTCGATAACAGTCGGA TCGGGGTTGATTCCGCCCAGGAGGTGGTGCGGCGCTTCCGTCCGGTGATCGATCACCTGCTCCACCTGTGGATGCCCGGG GCGAGGGTCGCCGAGGAGCTGGCCGAGGTGTGGGCCGCGCTGGAAAGACGTCCCGGCTTCTCGCGGGAGTGGTCCAGCCT GGTCGGGCGGATCAGGGATCAGCTCGCGCTGGCAGGACTCGAGTCGTCGTCGAGCCTGTCCGCCTTGGCACGGGTCGCGG GCGTCTGCCAGGCGGGAGCTGAGGAGGACTCCGTCGGCGCGTGA
Upstream 100 bases:
>100_bases CGGCAGCGCTCTCGGCCACGGAACGTCGTGCGGGAGCCGAGGGCATCGCGCTGCCGCCTGAGCCCGCGGACCGTCTTTCC TACTTTTTTCTGGGCCGTTG
Downstream 100 bases:
>100_bases CCGACGGTCGAACAGGGGGAGGTGCAGGTGAGCGCGGCGTTCGGATGGTTCGGCTTGGCGGTCGCCGTCGGGGGCGCCGT GTTTCTACCGGGTTTTCTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 387; Mature: 386
Protein sequence:
>387_residues MAVPKATAVPRAPKAREPAEELDMLVGEVRTTLLQNSHRVGATTVAALLDIVPGGRVRSATRPVAHAFSPDVRVGVHCPL ATISGTRADGAGTAVARASVTGGTVLQASTRARLTRAAGERRLPWSHYVANPGIIEVAGRTDTDDLAAGFLTTQTRASLD LGAVSSRLLSRVQRRPGIDRVTSLRARRTQLRFAVTWRSSDSAVLPQLLGAQRRISDFPSVPTGSAESFHRNSEPAASVS PVSVEFTIQDETLRTLRLRLGRCDPSDVVAACEDLALHDWLLSTVESLLDNSRIGVDSAQEVVRRFRPVIDHLLHLWMPG ARVAEELAEVWAALERRPGFSREWSSLVGRIRDQLALAGLESSSSLSALARVAGVCQAGAEEDSVGA
Sequences:
>Translated_387_residues MAVPKATAVPRAPKAREPAEELDMLVGEVRTTLLQNSHRVGATTVAALLDIVPGGRVRSATRPVAHAFSPDVRVGVHCPL ATISGTRADGAGTAVARASVTGGTVLQASTRARLTRAAGERRLPWSHYVANPGIIEVAGRTDTDDLAAGFLTTQTRASLD LGAVSSRLLSRVQRRPGIDRVTSLRARRTQLRFAVTWRSSDSAVLPQLLGAQRRISDFPSVPTGSAESFHRNSEPAASVS PVSVEFTIQDETLRTLRLRLGRCDPSDVVAACEDLALHDWLLSTVESLLDNSRIGVDSAQEVVRRFRPVIDHLLHLWMPG ARVAEELAEVWAALERRPGFSREWSSLVGRIRDQLALAGLESSSSLSALARVAGVCQAGAEEDSVGA >Mature_386_residues AVPKATAVPRAPKAREPAEELDMLVGEVRTTLLQNSHRVGATTVAALLDIVPGGRVRSATRPVAHAFSPDVRVGVHCPLA TISGTRADGAGTAVARASVTGGTVLQASTRARLTRAAGERRLPWSHYVANPGIIEVAGRTDTDDLAAGFLTTQTRASLDL GAVSSRLLSRVQRRPGIDRVTSLRARRTQLRFAVTWRSSDSAVLPQLLGAQRRISDFPSVPTGSAESFHRNSEPAASVSP VSVEFTIQDETLRTLRLRLGRCDPSDVVAACEDLALHDWLLSTVESLLDNSRIGVDSAQEVVRRFRPVIDHLLHLWMPGA RVAEELAEVWAALERRPGFSREWSSLVGRIRDQLALAGLESSSSLSALARVAGVCQAGAEEDSVGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41438; Mature: 41307
Theoretical pI: Translated: 9.59; Mature: 9.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVPKATAVPRAPKAREPAEELDMLVGEVRTTLLQNSHRVGATTVAALLDIVPGGRVRSA CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHH TRPVAHAFSPDVRVGVHCPLATISGTRADGAGTAVARASVTGGTVLQASTRARLTRAAGE HHHHHHHCCCCCEEEEECCHHCCCCCCCCCCCCHHHEEECCCCCEEEHHHHHHHHHHCCC RRLPWSHYVANPGIIEVAGRTDTDDLAAGFLTTQTRASLDLGAVSSRLLSRVQRRPGIDR CCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH VTSLRARRTQLRFAVTWRSSDSAVLPQLLGAQRRISDFPSVPTGSAESFHRNSEPAASVS HHHHHHHHHEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCC PVSVEFTIQDETLRTLRLRLGRCDPSDVVAACEDLALHDWLLSTVESLLDNSRIGVDSAQ CEEEEEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH EVVRRFRPVIDHLLHLWMPGARVAEELAEVWAALERRPGFSREWSSLVGRIRDQLALAGL HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC ESSSSLSALARVAGVCQAGAEEDSVGA CCCHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure AVPKATAVPRAPKAREPAEELDMLVGEVRTTLLQNSHRVGATTVAALLDIVPGGRVRSA CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHH TRPVAHAFSPDVRVGVHCPLATISGTRADGAGTAVARASVTGGTVLQASTRARLTRAAGE HHHHHHHCCCCCEEEEECCHHCCCCCCCCCCCCHHHEEECCCCCEEEHHHHHHHHHHCCC RRLPWSHYVANPGIIEVAGRTDTDDLAAGFLTTQTRASLDLGAVSSRLLSRVQRRPGIDR CCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH VTSLRARRTQLRFAVTWRSSDSAVLPQLLGAQRRISDFPSVPTGSAESFHRNSEPAASVS HHHHHHHHHEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCC PVSVEFTIQDETLRTLRLRLGRCDPSDVVAACEDLALHDWLLSTVESLLDNSRIGVDSAQ CEEEEEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH EVVRRFRPVIDHLLHLWMPGARVAEELAEVWAALERRPGFSREWSSLVGRIRDQLALAGL HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC ESSSSLSALARVAGVCQAGAEEDSVGA CCCHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA