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The map label for this gene is yfdE [H]

Identifier: 158318567

GI number: 158318567

Start: 8329222

End: 8331537

Strand: Direct

Name: yfdE [H]

Synonym: Franean1_6835

Alternate gene names: 158318567

Gene position: 8329222-8331537 (Clockwise)

Preceding gene: 158318566

Following gene: 158318568

Centisome position: 92.73

GC content: 75.86

Gene sequence:

>2316_bases
GTGAGCACCGCCCCCGCCGGACGTCCCTGCGAGGGCCTGTCGGTCGTCGAGGTCGCGGTCGGCACCAGCGACCTCGGCCT
GGGCCTGGCGGGCGGCGTGCCCGGCATGATCTTCGCCGACCTGGGCGCGCGGGTCGTCCGGGCGGTCGGGACGTCGGCGC
CGGCGATCGACGAGCACGTGGCCTGGGGCGAGGTCTGGCACCGCGACAAGCAGCTCGTCGTCACCGACGACGCGGCCGAG
GTGCGCGCGCTGCTCCGGGGCGCGGACGTCGCGTTCGTCTACGGACCCGAGGCGCTCGTCGAGCGGCGCGGCCTGGGCCA
CCTCGACCTCCAGGCGGCCAACCCGGGCCTGGTGTACGCCCGCTGCCGGCCCAGCCGGACGTCCAAGGGCCTCGGGGAGG
ACTTCGGGCTGCTGGTGGAGGCGCGGGCCGGGTTCTGCACCCAGCTCGCCGGGCACCGGCCGGGCCCGATCTTCGTCGAC
GCGCAGGCGTCCGGCAGCGGCACGGCCTTCCTGCTCACGGCGTCCGCGCTCGCACTGCTGCGCCGCCGGGTCGGGACGGG
CACCGGCGGCTGGGCCGAGACGTCGCTCTACGACGGGCTGCTCTCCACCCTCGGGTGCATGATCGGGCGCTCCGAGCGCG
CCGCGACGGAGATCGAGTCCTACTGGGAGAAGGGATCGACCTTCCCGAACTTCCTGTACCGCTGCGCCGACGGCGAGCTG
CTGCAGGTCTGGTTCGGTGGGAAGGGGATGTACTCCCGTCTCATCGACGTTCTCGGCGACACCCCCAGCGACGAGGGCTA
CTACGCCGACCAGATGACCGGGGCGCTCAACGAGCGTGCCCGCCGCTGGCGCTCGCCGTTCGCGCTGCGGCCGCGCGAGG
ACTGGCTGAACCGGCTGCGCGAGGCGGGCATCGCCTGCGAGCCGGTGCTGCGCCCCGGCGACGCGCTGGCCGACCCGCAC
CTGGCCGAGGTCGGCCTGGCGGTGACCCGCTCGGAGTCCGGCCGGCGGGACGTCGTCGTCGGCTCGCCGATCTCCGTCCG
CCCCGTCCGACCCGTCCGCCCCGCGCCCGCGAGCGCCGCCGGGACGTCCGGCCGTCTCCTGCGGGGGGTTCGCGTCCTGG
ACTTCTCGGCGTTCGTGGCCGGTCCGCTGGGCGCCCAGATCCTCGCCGACCTGGGCGCGGAGGTCGTCAAGGTCGAGCCG
CCCGAGGGCGAGGCCATGCGGGCCGCCGCCTACGCGGTGGCTGCCTGCCAGCGCGGCAAGCGCAGCCTGGCGATGGACCT
GGGCGCCCCCGAAGCCCGGCCTGTCGTGGAACGGCTGATCCGGTGGGCCGACGTCGTCGTGCACAACTTCCGGGTCGGAG
TGGCCGAACGGCTCCGGATCGACGCGGAGACCGTCGCCCGGCTCAACCCGCGCGCCGTGTACTGCCACGCCAGCGCCTTC
GGCCCGACGGGGCCGCGGGCGAAGTACCCCGGCAACGACGCCCTGATGCAGGCGCTGACCGGCCTGGAACAGGCCGTCGG
CGGCACCGGCAACGATCCGGTCGCCCCCACCTGGATTCCGCTGGACGTCAGCGGCGGCTGGGTGGCCGCGACCGGCATAC
TGGCCGGCCTGTACGCCCGGGAGTCGACCGGGTGCGGGCAGCGGGTGGCGACGAGCCTGCTGGGCGCGGGGATGCTCCTG
CAGAGCGGGGTGTTCCAGCGCGACGGCGAGCGCGTCCCGACCCCCTCGCTCGACTCGACCCAGACCGGATACGGCCCGGG
CTACCGCATCTACGCCGGCGGCGACGACCGCTGGTTCGCGCTCGTCCTGCCCGACCGCGCCGCGTGGGCCCGCCTGCGCG
AGCTGACGGCACCCGCCGCGACGCCCGTCACCGGCGACGCGGCCACCGGCCTGCCGGAGTCCTACGCGCCGCTGCGTGGG
GGCTCGGACGACGCGAGCGCCCGCCGGGCCGAGTCCGTCCTGGAGGCCGTGTTCGCCGCCGCGCCGGCGGCCGAGTGGGT
GGCCCGTCTGCGCGCGGCCGGCCTGCTCGCCGACCTCATCGAACCGCTCGACCGGGACGGCTTCCGCCGCGCGGTGCTGG
ACGACCCGGTCAACCGCCAGCTCGGCCGGGTCGCCTCGTACGAGGTCGCCGACTGGGGCTGGTTCGAGCAGATCGGGGCC
CTGCCGCGGTACGGCCCGACCGGCGTCGACGCGGACCCGGTCACGCCGATGCTGCCGGGCGTCGGTGAGCACAGCGTCGC
CGTGCTCACCGACCTCGGCTTCCCCCCGGCAGAGATCGACGCCCTCCTGGCCGCCAAAGCCGTCCGCCAGACCTGA

Upstream 100 bases:

>100_bases
CGCACGAGGACACCCTCGAGGTGATCACTCTCGCGGCCAGGGAGGTACTGCCCCGCCTCACGCTGCCGGCGGACGGGCTG
CCGGCGGACGAGGTCGCACC

Downstream 100 bases:

>100_bases
CCCCCTCGCGGACAGACCTGCTGGCGGACAGACCTGACCCTCACGGATCCCGGAAGCACTGCGGAATCCCCTCGGACGCC
GGCCGTCCTGGCCTGCGTCC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 771; Mature: 770

Protein sequence:

>771_residues
MSTAPAGRPCEGLSVVEVAVGTSDLGLGLAGGVPGMIFADLGARVVRAVGTSAPAIDEHVAWGEVWHRDKQLVVTDDAAE
VRALLRGADVAFVYGPEALVERRGLGHLDLQAANPGLVYARCRPSRTSKGLGEDFGLLVEARAGFCTQLAGHRPGPIFVD
AQASGSGTAFLLTASALALLRRRVGTGTGGWAETSLYDGLLSTLGCMIGRSERAATEIESYWEKGSTFPNFLYRCADGEL
LQVWFGGKGMYSRLIDVLGDTPSDEGYYADQMTGALNERARRWRSPFALRPREDWLNRLREAGIACEPVLRPGDALADPH
LAEVGLAVTRSESGRRDVVVGSPISVRPVRPVRPAPASAAGTSGRLLRGVRVLDFSAFVAGPLGAQILADLGAEVVKVEP
PEGEAMRAAAYAVAACQRGKRSLAMDLGAPEARPVVERLIRWADVVVHNFRVGVAERLRIDAETVARLNPRAVYCHASAF
GPTGPRAKYPGNDALMQALTGLEQAVGGTGNDPVAPTWIPLDVSGGWVAATGILAGLYARESTGCGQRVATSLLGAGMLL
QSGVFQRDGERVPTPSLDSTQTGYGPGYRIYAGGDDRWFALVLPDRAAWARLRELTAPAATPVTGDAATGLPESYAPLRG
GSDDASARRAESVLEAVFAAAPAAEWVARLRAAGLLADLIEPLDRDGFRRAVLDDPVNRQLGRVASYEVADWGWFEQIGA
LPRYGPTGVDADPVTPMLPGVGEHSVAVLTDLGFPPAEIDALLAAKAVRQT

Sequences:

>Translated_771_residues
MSTAPAGRPCEGLSVVEVAVGTSDLGLGLAGGVPGMIFADLGARVVRAVGTSAPAIDEHVAWGEVWHRDKQLVVTDDAAE
VRALLRGADVAFVYGPEALVERRGLGHLDLQAANPGLVYARCRPSRTSKGLGEDFGLLVEARAGFCTQLAGHRPGPIFVD
AQASGSGTAFLLTASALALLRRRVGTGTGGWAETSLYDGLLSTLGCMIGRSERAATEIESYWEKGSTFPNFLYRCADGEL
LQVWFGGKGMYSRLIDVLGDTPSDEGYYADQMTGALNERARRWRSPFALRPREDWLNRLREAGIACEPVLRPGDALADPH
LAEVGLAVTRSESGRRDVVVGSPISVRPVRPVRPAPASAAGTSGRLLRGVRVLDFSAFVAGPLGAQILADLGAEVVKVEP
PEGEAMRAAAYAVAACQRGKRSLAMDLGAPEARPVVERLIRWADVVVHNFRVGVAERLRIDAETVARLNPRAVYCHASAF
GPTGPRAKYPGNDALMQALTGLEQAVGGTGNDPVAPTWIPLDVSGGWVAATGILAGLYARESTGCGQRVATSLLGAGMLL
QSGVFQRDGERVPTPSLDSTQTGYGPGYRIYAGGDDRWFALVLPDRAAWARLRELTAPAATPVTGDAATGLPESYAPLRG
GSDDASARRAESVLEAVFAAAPAAEWVARLRAAGLLADLIEPLDRDGFRRAVLDDPVNRQLGRVASYEVADWGWFEQIGA
LPRYGPTGVDADPVTPMLPGVGEHSVAVLTDLGFPPAEIDALLAAKAVRQT
>Mature_770_residues
STAPAGRPCEGLSVVEVAVGTSDLGLGLAGGVPGMIFADLGARVVRAVGTSAPAIDEHVAWGEVWHRDKQLVVTDDAAEV
RALLRGADVAFVYGPEALVERRGLGHLDLQAANPGLVYARCRPSRTSKGLGEDFGLLVEARAGFCTQLAGHRPGPIFVDA
QASGSGTAFLLTASALALLRRRVGTGTGGWAETSLYDGLLSTLGCMIGRSERAATEIESYWEKGSTFPNFLYRCADGELL
QVWFGGKGMYSRLIDVLGDTPSDEGYYADQMTGALNERARRWRSPFALRPREDWLNRLREAGIACEPVLRPGDALADPHL
AEVGLAVTRSESGRRDVVVGSPISVRPVRPVRPAPASAAGTSGRLLRGVRVLDFSAFVAGPLGAQILADLGAEVVKVEPP
EGEAMRAAAYAVAACQRGKRSLAMDLGAPEARPVVERLIRWADVVVHNFRVGVAERLRIDAETVARLNPRAVYCHASAFG
PTGPRAKYPGNDALMQALTGLEQAVGGTGNDPVAPTWIPLDVSGGWVAATGILAGLYARESTGCGQRVATSLLGAGMLLQ
SGVFQRDGERVPTPSLDSTQTGYGPGYRIYAGGDDRWFALVLPDRAAWARLRELTAPAATPVTGDAATGLPESYAPLRGG
SDDASARRAESVLEAVFAAAPAAEWVARLRAAGLLADLIEPLDRDGFRRAVLDDPVNRQLGRVASYEVADWGWFEQIGAL
PRYGPTGVDADPVTPMLPGVGEHSVAVLTDLGFPPAEIDALLAAKAVRQT

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=410, Percent_Identity=27.8048780487805, Blast_Score=137, Evalue=3e-32,
Organism=Homo sapiens, GI266456254, Length=410, Percent_Identity=27.8048780487805, Blast_Score=137, Evalue=3e-32,
Organism=Homo sapiens, GI266458397, Length=237, Percent_Identity=33.3333333333333, Blast_Score=127, Evalue=5e-29,
Organism=Homo sapiens, GI266458393, Length=237, Percent_Identity=33.3333333333333, Blast_Score=126, Evalue=7e-29,
Organism=Homo sapiens, GI300863124, Length=260, Percent_Identity=28.8461538461538, Blast_Score=108, Evalue=2e-23,
Organism=Homo sapiens, GI300863128, Length=260, Percent_Identity=28.8461538461538, Blast_Score=108, Evalue=2e-23,
Organism=Homo sapiens, GI42822893, Length=140, Percent_Identity=37.8571428571429, Blast_Score=97, Evalue=4e-20,
Organism=Homo sapiens, GI266458395, Length=140, Percent_Identity=37.8571428571429, Blast_Score=97, Evalue=5e-20,
Organism=Homo sapiens, GI300863126, Length=151, Percent_Identity=31.7880794701987, Blast_Score=84, Evalue=4e-16,
Organism=Escherichia coli, GI87082093, Length=254, Percent_Identity=31.1023622047244, Blast_Score=119, Evalue=9e-28,
Organism=Escherichia coli, GI1788717, Length=237, Percent_Identity=30.379746835443, Blast_Score=90, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI32564160, Length=243, Percent_Identity=27.1604938271605, Blast_Score=83, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI115535051, Length=305, Percent_Identity=24.9180327868852, Blast_Score=75, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24648431, Length=195, Percent_Identity=35.8974358974359, Blast_Score=115, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24585488, Length=200, Percent_Identity=32.5, Blast_Score=109, Evalue=7e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 81366; Mature: 81235

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTAPAGRPCEGLSVVEVAVGTSDLGLGLAGGVPGMIFADLGARVVRAVGTSAPAIDEHV
CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
AWGEVWHRDKQLVVTDDAAEVRALLRGADVAFVYGPEALVERRGLGHLDLQAANPGLVYA
HHHHHHHCCCEEEEECCHHHHHHHHHCCCEEEEECCHHHHHHCCCCCEEEEECCCCEEEE
RCRPSRTSKGLGEDFGLLVEARAGFCTQLAGHRPGPIFVDAQASGSGTAFLLTASALALL
ECCCCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCEEEECCCCCCCCEEHHHHHHHHHH
RRRVGTGTGGWAETSLYDGLLSTLGCMIGRSERAATEIESYWEKGSTFPNFLYRCADGEL
HHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCE
LQVWFGGKGMYSRLIDVLGDTPSDEGYYADQMTGALNERARRWRSPFALRPREDWLNRLR
EEEEECCCHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
EAGIACEPVLRPGDALADPHLAEVGLAVTRSESGRRDVVVGSPISVRPVRPVRPAPASAA
HCCCCCCCCCCCCCCCCCCCHHHHCEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
GTSGRLLRGVRVLDFSAFVAGPLGAQILADLGAEVVKVEPPEGEAMRAAAYAVAACQRGK
CCCCHHHHCCCEEEHHHHHCCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCC
RSLAMDLGAPEARPVVERLIRWADVVVHNFRVGVAERLRIDAETVARLNPRAVYCHASAF
HHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHCCCCEEEEECCCC
GPTGPRAKYPGNDALMQALTGLEQAVGGTGNDPVAPTWIPLDVSGGWVAATGILAGLYAR
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
ESTGCGQRVATSLLGAGMLLQSGVFQRDGERVPTPSLDSTQTGYGPGYRIYAGGDDRWFA
CCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEE
LVLPDRAAWARLRELTAPAATPVTGDAATGLPESYAPLRGGSDDASARRAESVLEAVFAA
EEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
APAAEWVARLRAAGLLADLIEPLDRDGFRRAVLDDPVNRQLGRVASYEVADWGWFEQIGA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHCC
LPRYGPTGVDADPVTPMLPGVGEHSVAVLTDLGFPPAEIDALLAAKAVRQT
CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
STAPAGRPCEGLSVVEVAVGTSDLGLGLAGGVPGMIFADLGARVVRAVGTSAPAIDEHV
CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
AWGEVWHRDKQLVVTDDAAEVRALLRGADVAFVYGPEALVERRGLGHLDLQAANPGLVYA
HHHHHHHCCCEEEEECCHHHHHHHHHCCCEEEEECCHHHHHHCCCCCEEEEECCCCEEEE
RCRPSRTSKGLGEDFGLLVEARAGFCTQLAGHRPGPIFVDAQASGSGTAFLLTASALALL
ECCCCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCEEEECCCCCCCCEEHHHHHHHHHH
RRRVGTGTGGWAETSLYDGLLSTLGCMIGRSERAATEIESYWEKGSTFPNFLYRCADGEL
HHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCE
LQVWFGGKGMYSRLIDVLGDTPSDEGYYADQMTGALNERARRWRSPFALRPREDWLNRLR
EEEEECCCHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
EAGIACEPVLRPGDALADPHLAEVGLAVTRSESGRRDVVVGSPISVRPVRPVRPAPASAA
HCCCCCCCCCCCCCCCCCCCHHHHCEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
GTSGRLLRGVRVLDFSAFVAGPLGAQILADLGAEVVKVEPPEGEAMRAAAYAVAACQRGK
CCCCHHHHCCCEEEHHHHHCCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCC
RSLAMDLGAPEARPVVERLIRWADVVVHNFRVGVAERLRIDAETVARLNPRAVYCHASAF
HHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHCCCCEEEEECCCC
GPTGPRAKYPGNDALMQALTGLEQAVGGTGNDPVAPTWIPLDVSGGWVAATGILAGLYAR
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
ESTGCGQRVATSLLGAGMLLQSGVFQRDGERVPTPSLDSTQTGYGPGYRIYAGGDDRWFA
CCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEE
LVLPDRAAWARLRELTAPAATPVTGDAATGLPESYAPLRGGSDDASARRAESVLEAVFAA
EEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
APAAEWVARLRAAGLLADLIEPLDRDGFRRAVLDDPVNRQLGRVASYEVADWGWFEQIGA
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHCC
LPRYGPTGVDADPVTPMLPGVGEHSVAVLTDLGFPPAEIDALLAAKAVRQT
CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]