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The map label for this gene is ykfC [H]

Identifier: 158318468

GI number: 158318468

Start: 8192612

End: 8193865

Strand: Reverse

Name: ykfC [H]

Synonym: Franean1_6736

Alternate gene names: 158318468

Gene position: 8193865-8192612 (Counterclockwise)

Preceding gene: 158318471

Following gene: 158318455

Centisome position: 91.22

GC content: 61.24

Gene sequence:

>1254_bases
GTGAGTGGACCAGCATCGCGGGGAAAGTCGTTTGAGATCCCCAAACAGCTGGTGTGGGATGCCTGGCTGAAAGTGAAGGA
AAACGGTGGGGCACCGGGGCCCGACGGAGTGACGGTCGAGCAGTTCGAGGCGAACGTGAAGGATCGCCTGTACGTGCTGT
GGAACCGCATGTCGTCGGGGTCGTACTTCCCCGGACCCGTCGGAGCGGTGGAGATCCCGAAGAAAGGTGTGAAAGGAGGA
GCAAGAACCCTCGGCATTCCCAATGTAGTAGATCGCGTAGCGCAGACGGTGCTAAAGCTGGCTCTGGAGCCGAAGGTCGA
GCCGGTGTTCCACCGGGACTCGTACGGCTACAGACCAGGCCGTTCGCAGCGCCAGGCGCTCGAGGTCTGCCGGAAGCGGT
GCTGGTCGCACGACTGGGTCGTTGACTTGGACGTGCGGAAGTTCTTCGACACCGTGCCGTGGGAAAAGCTGCTGAAGGCG
GTGGCGTACCACACGGACCAGAAATGGGTCCTGATGTACGTGGAACGCTGTCTGAAAGCGCCGACGAAGCATGCCGACGG
AACCCTGCAAGAGAGAACCATGGGCACAGTCCAGGGTGGCCCATTCTCCCCGCTGGCGGCTAACATCTATCTGCACTGGG
GCCTTGACGCCTGGATGGCGCGCGAGTTCCCGACCGTTCCATTCGAGCGGTGGGCGGACGATGTTGTGTTTCACTGTGTG
AGCCTGGAACAGGCCAGGGAAGTGCGGGACGCGGTGGTGGCAAGGCTTGTCGAAGTCGGGTTGGAAGCTCACCCCGACAA
GACCCGGATCGTGTACTGCAAGGACAGCAACCGAGGTGGCGACTATGAAAACACGTCGTTCACGTTCCTGTCGTATACCT
TCAGGCCACGAGTGGCATGGAACGGCACCCAGAAGAAACGCTTCACCAGCTTCATCCCGGGTGCCGCGCCGGATCGGGTG
GCCTCGTTCAGCCGCGAAATGCGCGACCTGAGGCTGCACAGGCGAACGAACCTGACACTGGATCAACTCGCCGCGGACAT
CAACCCGAAAGTGGCGGGTTGGCTAGAATATTTCACCATGTTCTACCCGAGCGTGGTGCTACCCATCGGCACGCGCATTG
ACAGCCATCTCGTGCGCTGGGCGAGGAAGAAGTACAAACGGCTGACACGAAGTGAGCGTAGGGCGTGGGCATGGCTCAAG
GGAGTCCGGGAACGGTCCCCTGACCTGTTTGCGCACTGGGCGTTGCGGTACTGA

Upstream 100 bases:

>100_bases
GAGTAGCTATGAAAACCGGCTTTTCGCGGTCGGGCTGGAGCCAAGGGGAAGGGCTGCGTGGAACACAAGTGCGCACAACC
GGCTTAAGGGGAGGATGCGT

Downstream 100 bases:

>100_bases
CCGCCCCGCAGGGCGGTGCGGACGCCGGGGGCTGCGGCCAACCTCCATGGGATGAGCCACAGCCAGCGGCGACTAAGCGA
GCACCGTCCGTGATGCGCAG

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 416

Protein sequence:

>417_residues
MSGPASRGKSFEIPKQLVWDAWLKVKENGGAPGPDGVTVEQFEANVKDRLYVLWNRMSSGSYFPGPVGAVEIPKKGVKGG
ARTLGIPNVVDRVAQTVLKLALEPKVEPVFHRDSYGYRPGRSQRQALEVCRKRCWSHDWVVDLDVRKFFDTVPWEKLLKA
VAYHTDQKWVLMYVERCLKAPTKHADGTLQERTMGTVQGGPFSPLAANIYLHWGLDAWMAREFPTVPFERWADDVVFHCV
SLEQAREVRDAVVARLVEVGLEAHPDKTRIVYCKDSNRGGDYENTSFTFLSYTFRPRVAWNGTQKKRFTSFIPGAAPDRV
ASFSREMRDLRLHRRTNLTLDQLAADINPKVAGWLEYFTMFYPSVVLPIGTRIDSHLVRWARKKYKRLTRSERRAWAWLK
GVRERSPDLFAHWALRY

Sequences:

>Translated_417_residues
MSGPASRGKSFEIPKQLVWDAWLKVKENGGAPGPDGVTVEQFEANVKDRLYVLWNRMSSGSYFPGPVGAVEIPKKGVKGG
ARTLGIPNVVDRVAQTVLKLALEPKVEPVFHRDSYGYRPGRSQRQALEVCRKRCWSHDWVVDLDVRKFFDTVPWEKLLKA
VAYHTDQKWVLMYVERCLKAPTKHADGTLQERTMGTVQGGPFSPLAANIYLHWGLDAWMAREFPTVPFERWADDVVFHCV
SLEQAREVRDAVVARLVEVGLEAHPDKTRIVYCKDSNRGGDYENTSFTFLSYTFRPRVAWNGTQKKRFTSFIPGAAPDRV
ASFSREMRDLRLHRRTNLTLDQLAADINPKVAGWLEYFTMFYPSVVLPIGTRIDSHLVRWARKKYKRLTRSERRAWAWLK
GVRERSPDLFAHWALRY
>Mature_416_residues
SGPASRGKSFEIPKQLVWDAWLKVKENGGAPGPDGVTVEQFEANVKDRLYVLWNRMSSGSYFPGPVGAVEIPKKGVKGGA
RTLGIPNVVDRVAQTVLKLALEPKVEPVFHRDSYGYRPGRSQRQALEVCRKRCWSHDWVVDLDVRKFFDTVPWEKLLKAV
AYHTDQKWVLMYVERCLKAPTKHADGTLQERTMGTVQGGPFSPLAANIYLHWGLDAWMAREFPTVPFERWADDVVFHCVS
LEQAREVRDAVVARLVEVGLEAHPDKTRIVYCKDSNRGGDYENTSFTFLSYTFRPRVAWNGTQKKRFTSFIPGAAPDRVA
SFSREMRDLRLHRRTNLTLDQLAADINPKVAGWLEYFTMFYPSVVLPIGTRIDSHLVRWARKKYKRLTRSERRAWAWLKG
VRERSPDLFAHWALRY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226520, Length=203, Percent_Identity=26.6009852216749, Blast_Score=85, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6226521, Length=210, Percent_Identity=25.2380952380952, Blast_Score=85, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 47941; Mature: 47810

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGPASRGKSFEIPKQLVWDAWLKVKENGGAPGPDGVTVEQFEANVKDRLYVLWNRMSSG
CCCCCCCCCCCCCCHHHHHHHHHHEECCCCCCCCCCCCHHHHHCCHHHHEEEEEECCCCC
SYFPGPVGAVEIPKKGVKGGARTLGIPNVVDRVAQTVLKLALEPKVEPVFHRDSYGYRPG
CCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCC
RSQRQALEVCRKRCWSHDWVVDLDVRKFFDTVPWEKLLKAVAYHTDQKWVLMYVERCLKA
CCHHHHHHHHHHHHCCCCCEEEEHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCC
PTKHADGTLQERTMGTVQGGPFSPLAANIYLHWGLDAWMAREFPTVPFERWADDVVFHCV
CCCCCCCCHHHHHCCCCCCCCCCCCEEEEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHH
SLEQAREVRDAVVARLVEVGLEAHPDKTRIVYCKDSNRGGDYENTSFTFLSYTFRPRVAW
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEEECCCEEE
NGTQKKRFTSFIPGAAPDRVASFSREMRDLRLHRRTNLTLDQLAADINPKVAGWLEYFTM
CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHH
FYPSVVLPIGTRIDSHLVRWARKKYKRLTRSERRAWAWLKGVRERSPDLFAHWALRY
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCC
>Mature Secondary Structure 
SGPASRGKSFEIPKQLVWDAWLKVKENGGAPGPDGVTVEQFEANVKDRLYVLWNRMSSG
CCCCCCCCCCCCCHHHHHHHHHHEECCCCCCCCCCCCHHHHHCCHHHHEEEEEECCCCC
SYFPGPVGAVEIPKKGVKGGARTLGIPNVVDRVAQTVLKLALEPKVEPVFHRDSYGYRPG
CCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCC
RSQRQALEVCRKRCWSHDWVVDLDVRKFFDTVPWEKLLKAVAYHTDQKWVLMYVERCLKA
CCHHHHHHHHHHHHCCCCCEEEEHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCC
PTKHADGTLQERTMGTVQGGPFSPLAANIYLHWGLDAWMAREFPTVPFERWADDVVFHCV
CCCCCCCCHHHHHCCCCCCCCCCCCEEEEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHH
SLEQAREVRDAVVARLVEVGLEAHPDKTRIVYCKDSNRGGDYENTSFTFLSYTFRPRVAW
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEEECCCEEE
NGTQKKRFTSFIPGAAPDRVASFSREMRDLRLHRRTNLTLDQLAADINPKVAGWLEYFTM
CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHH
FYPSVVLPIGTRIDSHLVRWARKKYKRLTRSERRAWAWLKGVRERSPDLFAHWALRY
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]