| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is 158318347
Identifier: 158318347
GI number: 158318347
Start: 8045986
End: 8046300
Strand: Reverse
Name: 158318347
Synonym: Franean1_6612
Alternate gene names: NA
Gene position: 8046300-8045986 (Counterclockwise)
Preceding gene: 158318349
Following gene: 158318346
Centisome position: 89.58
GC content: 69.21
Gene sequence:
>315_bases ATGTCCGCTTACGTCATCGTCGGAGTCGACGTGCTCGACGAGGAGGCCAGCCTGGCCTACGCCGCCGTGGCCCAGCCGTC CGTCCTCAGCCACGGCGGCCGTTACCTCGTGGCAGGCCCCACGCCCGAGCCCGTCGAGGGCACCTGGGACTCCTCCCGGT TTCTGGTCATCGAGTTTCCCGACATGGATCGGATCCAGGAGTGGTACGACTCCCCCGAGTACCGGCGGGCCCGAGAGATG CGGAAGAGCGCAGCTCGGGTGCGGATGCTGTTTGCCGAGGGCTCGCCGCCCGAGGGCTTCTCCCTCCCGGCCTAG
Upstream 100 bases:
>100_bases GCTTTCGCCCTCGTCTTTGCTCACATTGACCAGGTTACAGTGGTGCATTAGTCTTCGGCGTAACATAAGTATACGCCGTT TCCAAGAGGCAGGAAAACCA
Downstream 100 bases:
>100_bases GCTTGTGATCATCAGCGCCAGGGGTCAGCCGGAAAAGCGATGACGTCGCTGGGGCGGGCGAGACTTGGCGAGCAAGTCCG GCCGGCTGTCGCGGGGTGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 104; Mature: 103
Protein sequence:
>104_residues MSAYVIVGVDVLDEEASLAYAAVAQPSVLSHGGRYLVAGPTPEPVEGTWDSSRFLVIEFPDMDRIQEWYDSPEYRRAREM RKSAARVRMLFAEGSPPEGFSLPA
Sequences:
>Translated_104_residues MSAYVIVGVDVLDEEASLAYAAVAQPSVLSHGGRYLVAGPTPEPVEGTWDSSRFLVIEFPDMDRIQEWYDSPEYRRAREM RKSAARVRMLFAEGSPPEGFSLPA >Mature_103_residues SAYVIVGVDVLDEEASLAYAAVAQPSVLSHGGRYLVAGPTPEPVEGTWDSSRFLVIEFPDMDRIQEWYDSPEYRRAREMR KSAARVRMLFAEGSPPEGFSLPA
Specific function: Unknown
COG id: COG5470
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11551; Mature: 11420
Theoretical pI: Translated: 4.39; Mature: 4.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAYVIVGVDVLDEEASLAYAAVAQPSVLSHGGRYLVAGPTPEPVEGTWDSSRFLVIEFP CCEEEEEEEEEECCCCCEEEEHHCCCHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEECC DMDRIQEWYDSPEYRRAREMRKSAARVRMLFAEGSPPEGFSLPA CHHHHHHHHCCHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCC >Mature Secondary Structure SAYVIVGVDVLDEEASLAYAAVAQPSVLSHGGRYLVAGPTPEPVEGTWDSSRFLVIEFP CEEEEEEEEEECCCCCEEEEHHCCCHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEECC DMDRIQEWYDSPEYRRAREMRKSAARVRMLFAEGSPPEGFSLPA CHHHHHHHHCCHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA