| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318247
Identifier: 158318247
GI number: 158318247
Start: 7920834
End: 7921337
Strand: Reverse
Name: 158318247
Synonym: Franean1_6512
Alternate gene names: NA
Gene position: 7921337-7920834 (Counterclockwise)
Preceding gene: 158318252
Following gene: 158318241
Centisome position: 88.19
GC content: 75.79
Gene sequence:
>504_bases GTGGCGGGCGTGGAGACTCCCGGCGCCTCATCTGCCCGGGCCTGGCGGAACAGCCTGCCCCGTAAGCGGATGGCGGCCGG GGTGCTGTTCGTCGACGGCGCCGGCCGCGTCCTGCTGGTGTGCCCGACATACCGGCCCGGATGGGATCTGCCGGGCGGTG TGGTCGAGGCGGACGAGGCACCCCTGGTGGCGGCCCGCCGCGAGCTCGCCGAGGAGCTGGGCCTGGACCGCGCCCTCGGG CGGTTACTGGCCGTCGACTGGGTACCGCCCGGGCCGGAGCGCACCGAGGGTCTGATCGTGGTGTTCGACGGCGGCGTGCT GACACCGGACGAGGCGGCCGGCATCCGACTGCCGGCCGACGAGCTCGCCGCCTGGTCGTTCGTGACGGCGGACGAGCTGC CCGGCCTCATGGCACCGCTGCTGGCGCGGCGGGTGGCCGCCTGCCTGACAGCGCGCGCCGGCGGCGCGACGATCTACCTC GAGGACGGCGCGCCGCCGAACTGA
Upstream 100 bases:
>100_bases CGCGGTGCCGAGGCCGCGCCTGGTCGTCGTTTGTCCTGGACGCTGCTCGCCGGTCGTCGCCGGTCGTCGCCGGTCGTCGC CGGTCTCGGTCGGCGTTACG
Downstream 100 bases:
>100_bases CGCACCGCCGGGACGGTACGCCGCTGGTGCGAGCGTCGTCCCCGGCGATCAGCCGGCCAGACCTGCCTGGTTGGCGAGGA CGGCGAGCTGGGCGCGGTCC
Product: NUDIX hydrolase
Products: NA
Alternate protein names: Bifunctional Protein; ADP-Ribose Pyrophosphatase; Pyrophosphohydrolase
Number of amino acids: Translated: 167; Mature: 166
Protein sequence:
>167_residues MAGVETPGASSARAWRNSLPRKRMAAGVLFVDGAGRVLLVCPTYRPGWDLPGGVVEADEAPLVAARRELAEELGLDRALG RLLAVDWVPPGPERTEGLIVVFDGGVLTPDEAAGIRLPADELAAWSFVTADELPGLMAPLLARRVAACLTARAGGATIYL EDGAPPN
Sequences:
>Translated_167_residues MAGVETPGASSARAWRNSLPRKRMAAGVLFVDGAGRVLLVCPTYRPGWDLPGGVVEADEAPLVAARRELAEELGLDRALG RLLAVDWVPPGPERTEGLIVVFDGGVLTPDEAAGIRLPADELAAWSFVTADELPGLMAPLLARRVAACLTARAGGATIYL EDGAPPN >Mature_166_residues AGVETPGASSARAWRNSLPRKRMAAGVLFVDGAGRVLLVCPTYRPGWDLPGGVVEADEAPLVAARRELAEELGLDRALGR LLAVDWVPPGPERTEGLIVVFDGGVLTPDEAAGIRLPADELAAWSFVTADELPGLMAPLLARRVAACLTARAGGATIYLE DGAPPN
Specific function: Unknown
COG id: COG0494
COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17433; Mature: 17302
Theoretical pI: Translated: 4.45; Mature: 4.45
Prosite motif: PS00893 NUDIX
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGVETPGASSARAWRNSLPRKRMAAGVLFVDGAGRVLLVCPTYRPGWDLPGGVVEADEA CCCCCCCCCCHHHHHHHCCCHHHHHCCEEEECCCCCEEEEECCCCCCCCCCCCEEECCCC PLVAARRELAEELGLDRALGRLLAVDWVPPGPERTEGLIVVFDGGVLTPDEAAGIRLPAD CHHHHHHHHHHHHCHHHHHHHHEEECCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCHH ELAAWSFVTADELPGLMAPLLARRVAACLTARAGGATIYLEDGAPPN HHHHHHEECHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC >Mature Secondary Structure AGVETPGASSARAWRNSLPRKRMAAGVLFVDGAGRVLLVCPTYRPGWDLPGGVVEADEA CCCCCCCCCHHHHHHHCCCHHHHHCCEEEECCCCCEEEEECCCCCCCCCCCCEEECCCC PLVAARRELAEELGLDRALGRLLAVDWVPPGPERTEGLIVVFDGGVLTPDEAAGIRLPAD CHHHHHHHHHHHHCHHHHHHHHEEECCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCHH ELAAWSFVTADELPGLMAPLLARRVAACLTARAGGATIYLEDGAPPN HHHHHHEECHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA