| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is 158318194
Identifier: 158318194
GI number: 158318194
Start: 7853302
End: 7853787
Strand: Direct
Name: 158318194
Synonym: Franean1_6459
Alternate gene names: NA
Gene position: 7853302-7853787 (Clockwise)
Preceding gene: 158318193
Following gene: 158318195
Centisome position: 87.43
GC content: 69.34
Gene sequence:
>486_bases ATGGGCGTGCTGTTCGAACCCGAGGACCAACATTTCAGCCCGGCCCTGATGCGGTCGACGGTGGTGATCCTGACCTGCCT CGCGCTGCTCGCCGTCCTGGAGACCTGGGTCTGGCTGACCCTGTCGTCGCCGTTCGCCCGGGTGTCCGTCACCGGGTCGA TGATCGTGACCGCGGTCAGCTTCTTCATCGCCGGCAACACCTTCCGCCTGCGCGACATCCGCCGCCGGGTCGGCAACCGC GCCCGCGCCGGCCGGATCGCCCCCATCGACGCGCTGTCAAGCCTGCCACCGCGGGAGACCATCGCCCGGCGTTTCATGCT CGGCGCGATCGGCGCCGTCGTCGGTGTCGGCACCCTTGTCCTGACCATGGTCTTCGCCGGTGACGAGACGGAGGGCGCCC GCGAGGCCATGGTCGCCTCGGTGCTCGGGATCGTCTGCGCGATGCTCTGTTTCGTGGGGGGAACCTTTGCCCGCCCGATC GACTGA
Upstream 100 bases:
>100_bases GCCCTCCACCGGGACGCACACCGCCGGACCACATACCGGCGGAACGCACACCGCGGTGCCGCGAATGCCCGTGGCCGAAG CAACCGCGAGGAGACGACCC
Downstream 100 bases:
>100_bases CGTTTTCCCGCCGCCGCCCGCCGCAATCGTCGCCCGCGGAAAGGGCTGTTCTCCGCCCGGCCATCTTCCGCACCTCGGAT GTTCGTTTTCGCCGGTCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 161; Mature: 160
Protein sequence:
>161_residues MGVLFEPEDQHFSPALMRSTVVILTCLALLAVLETWVWLTLSSPFARVSVTGSMIVTAVSFFIAGNTFRLRDIRRRVGNR ARAGRIAPIDALSSLPPRETIARRFMLGAIGAVVGVGTLVLTMVFAGDETEGAREAMVASVLGIVCAMLCFVGGTFARPI D
Sequences:
>Translated_161_residues MGVLFEPEDQHFSPALMRSTVVILTCLALLAVLETWVWLTLSSPFARVSVTGSMIVTAVSFFIAGNTFRLRDIRRRVGNR ARAGRIAPIDALSSLPPRETIARRFMLGAIGAVVGVGTLVLTMVFAGDETEGAREAMVASVLGIVCAMLCFVGGTFARPI D >Mature_160_residues GVLFEPEDQHFSPALMRSTVVILTCLALLAVLETWVWLTLSSPFARVSVTGSMIVTAVSFFIAGNTFRLRDIRRRVGNRA RAGRIAPIDALSSLPPRETIARRFMLGAIGAVVGVGTLVLTMVFAGDETEGAREAMVASVLGIVCAMLCFVGGTFARPID
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17258; Mature: 17126
Theoretical pI: Translated: 9.00; Mature: 9.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVLFEPEDQHFSPALMRSTVVILTCLALLAVLETWVWLTLSSPFARVSVTGSMIVTAVS CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHH FFIAGNTFRLRDIRRRVGNRARAGRIAPIDALSSLPPRETIARRFMLGAIGAVVGVGTLV HHHCCCCHHHHHHHHHHCCHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH LTMVFAGDETEGAREAMVASVLGIVCAMLCFVGGTFARPID HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure GVLFEPEDQHFSPALMRSTVVILTCLALLAVLETWVWLTLSSPFARVSVTGSMIVTAVS CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHH FFIAGNTFRLRDIRRRVGNRARAGRIAPIDALSSLPPRETIARRFMLGAIGAVVGVGTLV HHHCCCCHHHHHHHHHHCCHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH LTMVFAGDETEGAREAMVASVLGIVCAMLCFVGGTFARPID HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA