| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318012
Identifier: 158318012
GI number: 158318012
Start: 7617980
End: 7620157
Strand: Direct
Name: 158318012
Synonym: Franean1_6272
Alternate gene names: NA
Gene position: 7617980-7620157 (Clockwise)
Preceding gene: 158318011
Following gene: 158318013
Centisome position: 84.81
GC content: 69.15
Gene sequence:
>2178_bases GTGACTACGCCGCCGCTGGAGCGGTTCTCCAACGCCTACACAGCCGCCACCGGATGGGGTATCGACCCCACCCGCGCTCA GCAGGACGTCCGCTGCCCTGCTCATGAGGACGGGTCGCCGTCGCTGTCGGTCGGTGCCGGCCACGACGGGCGGGTGCTGC TGACCTGCCAGGCCGGGTGCGATCTGGACGCGATCCTGGCCGCCGTCGAGCTGGCCACCGCCGACCTGTTCCCGCCCCGC GGCGAGCAGGCGAAGCCGCAGATCGTCGCGTCGTATCCGTACACCGACGAGCAGGGAACCCGACTGTTCACGGTCCACCG CAAGGAGCCGGGCCGGGACGGGAGCCGGAAGGAGTTCGTCCAGCAGGCCGCGGACGGGTCCTGGAAGACCCGGGGTATCC GCAAGCCGCTGTACCGGCTGCCCGAGGTTGTCGAGGCCGTGAAGAACGGTGCCGTCGTCTGGGTTGTCGAGGGCGAGAAG GATGCTGACCGGCTCGCCAGCCTCAGCCTGACGGCCACGACCTGCCCGCAGGGCGCGAGGAAGTGGAAAGCGGAGCACAC CGACAGCCTGTCCGGCGCCGCCGACGTGCGGGTCATCGCGGACAACGACGATCCGGGCCGGGCGCACGCCGCCCAGGTAG AGGCCGTTCTGCGGCCGGTCGTGACCTCGGTGTCGGTGTGGCTGCCAGCCGCAGGTAAGGACGTCTCCGACCATCTGAAC GCCGGTCACGGCCTGGACGATCTGCGTCCGCTCGCCGTCGACGAAGGGCCGGCGCCCGGTGCTGCGTCGACGGCTGCAGC CTCGACCGTTGACGCGGCAGAGCTTGAGACCGACGACGCGAACGCGCTGCGCCTGGTAGCGGAGTACGGGAACACGATCC GCCGCGTGTCGGACATGGGGTCGTGGTGGCGCTGGACTGGAAAGCGATGGGAGCGGGATCACGACGACGCCCACGTACGC GAAGCCGCGAAGATCCTCGCCCGGAAGCTCCCGGCGGAAACACTTGAGCAGCGGAAGTACAAGCGCGCGAGCCTGAGCAG CACGGGCCTGTCGGGAGCTACGCGGGTCGCCCAGTCCGACCCGCGGGTCACCGTGCTCGCCCGCGATCTCGACGCCCACC CGCACCTGCTGAACACACAGTCCGGTGTGGTCGACCTCGTGACCGGAGCTGTAAAGCCGCACGACCCATGGCTGATGCTG ACCCGGATAACCCCCCTCGACGTCGACACCGAGGCCACACACCCGATGTGGTCCGAGTTCCTCGCCGAGACCTTCGGCGG GGACACCGAGCTGGTCGCCTACGTACAGAGCCTGTGCGGACTCGCTCTGCTGGGCGACGTCCGGGAGCACGTCCTGCCCC TCATGTACGGGGCTGGGGCCAATGGGAAAGGCGTGATCCTGCTGGTCCTGCAGGGTCTCCTGGGCATCGCCGACACCGGC GGCTACTCAGTCTCCGCCCCGGACGGCTTCCTGATGGCCGGGAACGGCACCGCACACCCAACCGAGATCGCCCGGCTCCG CGGCGCACGCCTCGTGGTGTGTTCGGAGCAGACCTCCGGCCGACGCTTCGACGAAGCCAAGGTCAAGAGGCTCACCGGCG GAGACCTCCTCACCGGGCGGTTCATGCGCGGCGACTTCTTCGATTTTGAGCCGTCTCACCTGACCGTCGTCGCCACGAAT CATCTGCCCGAAGTCATCGAAGGCGGACCCTCGTTCTGGCGCCGGGCCCGGCTGATCCCGTTCGATCACGTGGTTCCGCC CGAGCGGCGTGACACGGAGCTACACACCAAGCTCCTGAGCGCCGAAGGGCCGGCGATCTTGGGCTGGATGGTCCGCGGGG CGATGATCGTCATCGGAAGCGGGCTGGTCGACCCGCCCCGCGTGCTCGCCGCCACCGACGACTACCGCATCAGCGAGGAC AGCCTCGCGTCGTTCGTCCGCGACGACTGCATCGTCAACCCGCACGCCTGGTGCACGGTCCCGGACTTCCGCACGCGCTA TGAGGCGCACTGCGCGGAGATGGGTGTGGACCCGTTGTCCGCGAAGGCGGTCACCACTCGGCTGACCAGGGAGTTTCCGG TGCAGTCCGACCGTCTCTCCCGCCCTTCCCGTCGGATCTACCGCGGGATCGGGCTGGTCGATGCGGACGCAGAGTCCGAC GAAGAAACCGGCCGGTGA
Upstream 100 bases:
>100_bases CGTGCCCCCACGGCAGCAACTCCTCTTCCAGAATAGCATCAGCTGCCGACGGAATCGCCCGGCTCCGCGTGCGTCTCTGC GTGCTGGCGGCTGGTGCTCG
Downstream 100 bases:
>100_bases CGACGCGGCGATGACGGATGACGGATCGGGCCCCGAGGCCACATTTCCAGCGTTCGCGCGGGCGCCTGCGCGCACGCATA TGCGCTACGCGGCAAATGCG
Product: P4 family phage/plasmid primase
Products: NA
Alternate protein names: Phage/Plasmid Primase P4 Family; DNA Primase/Helicase; Phage DNA Polymerase; Phage Primase; Primase; Phage-Like Protein; AAA ATPase; Nucleoside Triphosphatase D5 Family; DNA Primase Domain-Containing Protein; Phage-Associated Protein; Phage/Plasmid Primase; Phage/Plasmid DNA Primase; Phage/Plasmid Primase P4-Like; Bacteriophage-Related Protein; Phage/Plasmid Primase P4 C-Terminal Protein; Transcriptional Regulator; DNA-Polymerase Or DNA-Primase; Bacteriophage Related Protein; Prophage; Regulatory Protein; Plasmid/Phage Primase; Prim; Bacteriophage Protein; Primase P4-Like Protein; D5 N-Terminal Domain Family Protein; Phage Associated DNA Primase; Zinc Finger CHC2-Family Protein; DNA Primase Phage/Plasmid; Phage/Plasmid Primase P4-Like Protein; DNA Primase; Telomere-Associated Protein
Number of amino acids: Translated: 725; Mature: 724
Protein sequence:
>725_residues MTTPPLERFSNAYTAATGWGIDPTRAQQDVRCPAHEDGSPSLSVGAGHDGRVLLTCQAGCDLDAILAAVELATADLFPPR GEQAKPQIVASYPYTDEQGTRLFTVHRKEPGRDGSRKEFVQQAADGSWKTRGIRKPLYRLPEVVEAVKNGAVVWVVEGEK DADRLASLSLTATTCPQGARKWKAEHTDSLSGAADVRVIADNDDPGRAHAAQVEAVLRPVVTSVSVWLPAAGKDVSDHLN AGHGLDDLRPLAVDEGPAPGAASTAAASTVDAAELETDDANALRLVAEYGNTIRRVSDMGSWWRWTGKRWERDHDDAHVR EAAKILARKLPAETLEQRKYKRASLSSTGLSGATRVAQSDPRVTVLARDLDAHPHLLNTQSGVVDLVTGAVKPHDPWLML TRITPLDVDTEATHPMWSEFLAETFGGDTELVAYVQSLCGLALLGDVREHVLPLMYGAGANGKGVILLVLQGLLGIADTG GYSVSAPDGFLMAGNGTAHPTEIARLRGARLVVCSEQTSGRRFDEAKVKRLTGGDLLTGRFMRGDFFDFEPSHLTVVATN HLPEVIEGGPSFWRRARLIPFDHVVPPERRDTELHTKLLSAEGPAILGWMVRGAMIVIGSGLVDPPRVLAATDDYRISED SLASFVRDDCIVNPHAWCTVPDFRTRYEAHCAEMGVDPLSAKAVTTRLTREFPVQSDRLSRPSRRIYRGIGLVDADAESD EETGR
Sequences:
>Translated_725_residues MTTPPLERFSNAYTAATGWGIDPTRAQQDVRCPAHEDGSPSLSVGAGHDGRVLLTCQAGCDLDAILAAVELATADLFPPR GEQAKPQIVASYPYTDEQGTRLFTVHRKEPGRDGSRKEFVQQAADGSWKTRGIRKPLYRLPEVVEAVKNGAVVWVVEGEK DADRLASLSLTATTCPQGARKWKAEHTDSLSGAADVRVIADNDDPGRAHAAQVEAVLRPVVTSVSVWLPAAGKDVSDHLN AGHGLDDLRPLAVDEGPAPGAASTAAASTVDAAELETDDANALRLVAEYGNTIRRVSDMGSWWRWTGKRWERDHDDAHVR EAAKILARKLPAETLEQRKYKRASLSSTGLSGATRVAQSDPRVTVLARDLDAHPHLLNTQSGVVDLVTGAVKPHDPWLML TRITPLDVDTEATHPMWSEFLAETFGGDTELVAYVQSLCGLALLGDVREHVLPLMYGAGANGKGVILLVLQGLLGIADTG GYSVSAPDGFLMAGNGTAHPTEIARLRGARLVVCSEQTSGRRFDEAKVKRLTGGDLLTGRFMRGDFFDFEPSHLTVVATN HLPEVIEGGPSFWRRARLIPFDHVVPPERRDTELHTKLLSAEGPAILGWMVRGAMIVIGSGLVDPPRVLAATDDYRISED SLASFVRDDCIVNPHAWCTVPDFRTRYEAHCAEMGVDPLSAKAVTTRLTREFPVQSDRLSRPSRRIYRGIGLVDADAESD EETGR >Mature_724_residues TTPPLERFSNAYTAATGWGIDPTRAQQDVRCPAHEDGSPSLSVGAGHDGRVLLTCQAGCDLDAILAAVELATADLFPPRG EQAKPQIVASYPYTDEQGTRLFTVHRKEPGRDGSRKEFVQQAADGSWKTRGIRKPLYRLPEVVEAVKNGAVVWVVEGEKD ADRLASLSLTATTCPQGARKWKAEHTDSLSGAADVRVIADNDDPGRAHAAQVEAVLRPVVTSVSVWLPAAGKDVSDHLNA GHGLDDLRPLAVDEGPAPGAASTAAASTVDAAELETDDANALRLVAEYGNTIRRVSDMGSWWRWTGKRWERDHDDAHVRE AAKILARKLPAETLEQRKYKRASLSSTGLSGATRVAQSDPRVTVLARDLDAHPHLLNTQSGVVDLVTGAVKPHDPWLMLT RITPLDVDTEATHPMWSEFLAETFGGDTELVAYVQSLCGLALLGDVREHVLPLMYGAGANGKGVILLVLQGLLGIADTGG YSVSAPDGFLMAGNGTAHPTEIARLRGARLVVCSEQTSGRRFDEAKVKRLTGGDLLTGRFMRGDFFDFEPSHLTVVATNH LPEVIEGGPSFWRRARLIPFDHVVPPERRDTELHTKLLSAEGPAILGWMVRGAMIVIGSGLVDPPRVLAATDDYRISEDS LASFVRDDCIVNPHAWCTVPDFRTRYEAHCAEMGVDPLSAKAVTTRLTREFPVQSDRLSRPSRRIYRGIGLVDADAESDE ETGR
Specific function: Unknown
COG id: COG3378
COG function: function code R; Predicted ATPase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 78527; Mature: 78396
Theoretical pI: Translated: 5.80; Mature: 5.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTPPLERFSNAYTAATGWGIDPTRAQQDVRCPAHEDGSPSLSVGAGHDGRVLLTCQAGC CCCCCHHHHCCCEEECCCCCCCHHHCCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCC DLDAILAAVELATADLFPPRGEQAKPQIVASYPYTDEQGTRLFTVHRKEPGRDGSRKEFV CHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCHHHHHH QQAADGSWKTRGIRKPLYRLPEVVEAVKNGAVVWVVEGEKDADRLASLSLTATTCPQGAR HHHCCCCCHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHEEEEEECCCCCHHH KWKAEHTDSLSGAADVRVIADNDDPGRAHAAQVEAVLRPVVTSVSVWLPAAGKDVSDHLN HHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHCC AGHGLDDLRPLAVDEGPAPGAASTAAASTVDAAELETDDANALRLVAEYGNTIRRVSDMG CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCC SWWRWTGKRWERDHDDAHVREAAKILARKLPAETLEQRKYKRASLSSTGLSGATRVAQSD HHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCC PRVTVLARDLDAHPHLLNTQSGVVDLVTGAVKPHDPWLMLTRITPLDVDTEATHPMWSEF CCEEEEEECCCCCCCEECCCCCHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHH LAETFGGDTELVAYVQSLCGLALLGDVREHVLPLMYGAGANGKGVILLVLQGLLGIADTG HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCC GYSVSAPDGFLMAGNGTAHPTEIARLRGARLVVCSEQTSGRRFDEAKVKRLTGGDLLTGR CEEEECCCCEEEECCCCCCHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHCCCCCEEECE FMRGDFFDFEPSHLTVVATNHLPEVIEGGPSFWRRARLIPFDHVVPPERRDTELHTKLLS ECCCCCCCCCCCCEEEEECCCCCHHHHCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH AEGPAILGWMVRGAMIVIGSGLVDPPRVLAATDDYRISEDSLASFVRDDCIVNPHAWCTV CCCCHHHHHHHHCEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHCEECCCCEEEC PDFRTRYEAHCAEMGVDPLSAKAVTTRLTREFPVQSDRLSRPSRRIYRGIGLVDADAESD CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHCCCEECCCCCC EETGR CCCCC >Mature Secondary Structure TTPPLERFSNAYTAATGWGIDPTRAQQDVRCPAHEDGSPSLSVGAGHDGRVLLTCQAGC CCCCHHHHCCCEEECCCCCCCHHHCCCCCCCCCCCCCCCCEEECCCCCCCEEEEECCCC DLDAILAAVELATADLFPPRGEQAKPQIVASYPYTDEQGTRLFTVHRKEPGRDGSRKEFV CHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCHHHHHH QQAADGSWKTRGIRKPLYRLPEVVEAVKNGAVVWVVEGEKDADRLASLSLTATTCPQGAR HHHCCCCCHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHEEEEEECCCCCHHH KWKAEHTDSLSGAADVRVIADNDDPGRAHAAQVEAVLRPVVTSVSVWLPAAGKDVSDHLN HHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHCC AGHGLDDLRPLAVDEGPAPGAASTAAASTVDAAELETDDANALRLVAEYGNTIRRVSDMG CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCC SWWRWTGKRWERDHDDAHVREAAKILARKLPAETLEQRKYKRASLSSTGLSGATRVAQSD HHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCC PRVTVLARDLDAHPHLLNTQSGVVDLVTGAVKPHDPWLMLTRITPLDVDTEATHPMWSEF CCEEEEEECCCCCCCEECCCCCHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHH LAETFGGDTELVAYVQSLCGLALLGDVREHVLPLMYGAGANGKGVILLVLQGLLGIADTG HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCC GYSVSAPDGFLMAGNGTAHPTEIARLRGARLVVCSEQTSGRRFDEAKVKRLTGGDLLTGR CEEEECCCCEEEECCCCCCHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHCCCCCEEECE FMRGDFFDFEPSHLTVVATNHLPEVIEGGPSFWRRARLIPFDHVVPPERRDTELHTKLLS ECCCCCCCCCCCCEEEEECCCCCHHHHCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH AEGPAILGWMVRGAMIVIGSGLVDPPRVLAATDDYRISEDSLASFVRDDCIVNPHAWCTV CCCCHHHHHHHHCEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHCEECCCCEEEC PDFRTRYEAHCAEMGVDPLSAKAVTTRLTREFPVQSDRLSRPSRRIYRGIGLVDADAESD CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHCCCEECCCCCC EETGR CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA