BacMap

Definition	Frankia sp. EAN1pec chromosome, complete genome.
Accession	NC_009921
Length	8,982,042

Click here to switch to the map view.

The map label for this gene is fabG [H]

Identifier: 158317978

GI number: 158317978

Start: 7575305

End: 7576177

Strand: Reverse

Name: fabG [H]

Synonym: Franean1_6238

Alternate gene names: 158317978

Gene position: 7576177-7575305 (Counterclockwise)

Preceding gene: 158317979

Following gene: 158317977

Centisome position: 84.35

GC content: 73.88

Gene sequence:

>873_bases
ATGACACGGTTGGATGAATCGGCGATCCCCGACTACCCCGGGCTGCTGCGCCTCGACGGACGGGTGGCGATGGTCGTGGG
GGCCGGCCAGGGCAACGGCCGGCACACCGCCCACGCGTTGGCGTCGGTGGGAGCCAGGGTCGCGTGCGTCGACGTGGATC
CCGACCTCGCCCGCGAGATAGCGGCCGAGGTGGGTGGCTTACCCTGCGTCGCCGACGCGCGCCGGCGCGACGACGTCGAG
CGCATCGTTGCCGAGACCCTCGCGGCCTACGGGCGCCTCGACGCCGTCGTCGACATCGTCGGCATGGCCCTGTGGTCGAC
CCTGCTGGAGGTGACGGACGAGGACTGGGACGCGACCTTCGGGCTGGTGCTGCGGCACGCCCACCTCATCACGCAGATCG
TGGGCCGGCAGATGGTGGCCGCCGGCGGCGGGGCGATGGTGTTCACCGCCTCGGTCAGCGGCCTGACCAGCGCGCCCAAC
CACGCCGCCTACGGAGCGGCCAAGGCCGGCCTGCTGTCCCTCGTGCGCACGGCGGCCGTCGAGCTCGGCCCGTCGAACAT
CCGGGTCAACGCGGTGGCACCCGGTTCCATCCAGACGCCGCGCATCATGCGCGCACTACAGGCACGGGGGGATGTCCCCC
CGCCGCCGGCGGTGGAACCGCTGGGCCGTTCGGGCGAGCCGCGCGACATCGCCGGCGCGGCCCTGTTCCTGTGCTCCGAC
CTCTCCCGGCACGTGACCGGCCAGACCCTCGTGGTCGACGGCGGAGCCACCGCCCGCTTCGCCTACATGGGCTCCGGGCT
GTCGTCGACGGCGCCGGCTGCTCCGACGACGTCGCCCCCGGCGGTGCCGCCCTCGACGGCCACGCCGTCATGA

Upstream 100 bases:

>100_bases
CGAGCTCGAACGTCGCGAGGTCCAGGTCTCGACCTCGGTGACCGCCACCTGATCCCGCCGATCCCGATCGCAGGCAGCGG
CAGAGACGGAGACAGGAACG

Downstream 100 bases:

>100_bases
CCCGGGACGGGGCGGCCCTCGAGGAGGACGGACGCGCGGAGCCGGTCAGGGCGCTGGGCCGGGCGTTCGACCTCACCGGC
CGGGTGGCGATCGTGACCGG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MTRLDESAIPDYPGLLRLDGRVAMVVGAGQGNGRHTAHALASVGARVACVDVDPDLAREIAAEVGGLPCVADARRRDDVE
RIVAETLAAYGRLDAVVDIVGMALWSTLLEVTDEDWDATFGLVLRHAHLITQIVGRQMVAAGGGAMVFTASVSGLTSAPN
HAAYGAAKAGLLSLVRTAAVELGPSNIRVNAVAPGSIQTPRIMRALQARGDVPPPPAVEPLGRSGEPRDIAGAALFLCSD
LSRHVTGQTLVVDGGATARFAYMGSGLSSTAPAAPTTSPPAVPPSTATPS

Sequences:

>Translated_290_residues
MTRLDESAIPDYPGLLRLDGRVAMVVGAGQGNGRHTAHALASVGARVACVDVDPDLAREIAAEVGGLPCVADARRRDDVE
RIVAETLAAYGRLDAVVDIVGMALWSTLLEVTDEDWDATFGLVLRHAHLITQIVGRQMVAAGGGAMVFTASVSGLTSAPN
HAAYGAAKAGLLSLVRTAAVELGPSNIRVNAVAPGSIQTPRIMRALQARGDVPPPPAVEPLGRSGEPRDIAGAALFLCSD
LSRHVTGQTLVVDGGATARFAYMGSGLSSTAPAAPTTSPPAVPPSTATPS
>Mature_289_residues
TRLDESAIPDYPGLLRLDGRVAMVVGAGQGNGRHTAHALASVGARVACVDVDPDLAREIAAEVGGLPCVADARRRDDVER
IVAETLAAYGRLDAVVDIVGMALWSTLLEVTDEDWDATFGLVLRHAHLITQIVGRQMVAAGGGAMVFTASVSGLTSAPNH
AAYGAAKAGLLSLVRTAAVELGPSNIRVNAVAPGSIQTPRIMRALQARGDVPPPPAVEPLGRSGEPRDIAGAALFLCSDL
SRHVTGQTLVVDGGATARFAYMGSGLSSTAPAAPTTSPPAVPPSTATPS

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=256, Percent_Identity=31.640625, Blast_Score=119, Evalue=2e-27,
Organism=Homo sapiens, GI7705925, Length=253, Percent_Identity=37.5494071146245, Blast_Score=111, Evalue=6e-25,
Organism=Homo sapiens, GI66933014, Length=246, Percent_Identity=29.6747967479675, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI126723750, Length=256, Percent_Identity=30.859375, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI4504505, Length=238, Percent_Identity=33.1932773109244, Blast_Score=108, Evalue=7e-24,
Organism=Homo sapiens, GI15277342, Length=253, Percent_Identity=32.0158102766798, Blast_Score=106, Evalue=3e-23,
Organism=Homo sapiens, GI40254992, Length=239, Percent_Identity=30.5439330543933, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI19923817, Length=255, Percent_Identity=26.2745098039216, Blast_Score=85, Evalue=9e-17,
Organism=Homo sapiens, GI10190704, Length=275, Percent_Identity=29.0909090909091, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI59889578, Length=228, Percent_Identity=29.8245614035088, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI5031737, Length=251, Percent_Identity=30.2788844621514, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI126723191, Length=181, Percent_Identity=30.3867403314917, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI4503301, Length=250, Percent_Identity=27.2, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI31542939, Length=230, Percent_Identity=27.3913043478261, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI302344755, Length=89, Percent_Identity=35.9550561797753, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI4758504, Length=198, Percent_Identity=30.3030303030303, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI33667109, Length=192, Percent_Identity=31.25, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI1789208, Length=251, Percent_Identity=31.0756972111554, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=31.3725490196078, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1786812, Length=255, Percent_Identity=36.078431372549, Blast_Score=110, Evalue=8e-26,
Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=32.2448979591837, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1787905, Length=252, Percent_Identity=31.7460317460317, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1788459, Length=253, Percent_Identity=33.201581027668, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790717, Length=247, Percent_Identity=27.5303643724696, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87082160, Length=254, Percent_Identity=27.9527559055118, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1789378, Length=263, Percent_Identity=28.1368821292776, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789057, Length=253, Percent_Identity=28.4584980237154, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1787545, Length=232, Percent_Identity=30.6034482758621, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI2367365, Length=240, Percent_Identity=27.5, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787526, Length=249, Percent_Identity=24.8995983935743, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17561402, Length=256, Percent_Identity=33.984375, Blast_Score=120, Evalue=6e-28,
Organism=Caenorhabditis elegans, GI17555706, Length=277, Percent_Identity=32.129963898917, Blast_Score=112, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI25147288, Length=251, Percent_Identity=32.6693227091633, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17560676, Length=253, Percent_Identity=28.8537549407115, Blast_Score=97, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI17562906, Length=269, Percent_Identity=28.6245353159851, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI17544670, Length=270, Percent_Identity=27.7777777777778, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17562908, Length=270, Percent_Identity=28.8888888888889, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=27.3764258555133, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI115534694, Length=249, Percent_Identity=30.1204819277108, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17560220, Length=269, Percent_Identity=26.0223048327138, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17562904, Length=262, Percent_Identity=29.0076335877863, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17562910, Length=262, Percent_Identity=27.8625954198473, Blast_Score=88, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17531453, Length=269, Percent_Identity=27.5092936802974, Blast_Score=88, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=28.2442748091603, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI193204405, Length=267, Percent_Identity=25.4681647940075, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17568967, Length=219, Percent_Identity=31.0502283105023, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17538182, Length=257, Percent_Identity=27.6264591439689, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=27.6515151515151, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17560332, Length=263, Percent_Identity=28.5171102661597, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI71994600, Length=253, Percent_Identity=27.2727272727273, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=27.5471698113208, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17551412, Length=266, Percent_Identity=27.8195488721804, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71994604, Length=256, Percent_Identity=26.171875, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI72000259, Length=264, Percent_Identity=26.8939393939394, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17508651, Length=258, Percent_Identity=27.5193798449612, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17565030, Length=264, Percent_Identity=29.1666666666667, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17538480, Length=263, Percent_Identity=26.615969581749, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17563726, Length=273, Percent_Identity=25.6410256410256, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI71997099, Length=243, Percent_Identity=28.3950617283951, Blast_Score=67, Evalue=9e-12,
Organism=Saccharomyces cerevisiae, GI6324126, Length=285, Percent_Identity=28.4210526315789, Blast_Score=92, Evalue=8e-20,
Organism=Saccharomyces cerevisiae, GI6322861, Length=282, Percent_Identity=25.531914893617, Blast_Score=79, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=34.136546184739, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI21357041, Length=250, Percent_Identity=33.2, Blast_Score=112, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24644339, Length=255, Percent_Identity=30.9803921568627, Blast_Score=106, Evalue=2e-23,
Organism=Drosophila melanogaster, GI21355319, Length=253, Percent_Identity=30.0395256916996, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI28571526, Length=250, Percent_Identity=30.8, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=30.1587301587302, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24643142, Length=242, Percent_Identity=31.404958677686, Blast_Score=92, Evalue=5e-19,
Organism=Drosophila melanogaster, GI18859837, Length=192, Percent_Identity=31.7708333333333, Blast_Score=88, Evalue=7e-18,
Organism=Drosophila melanogaster, GI24644337, Length=259, Percent_Identity=31.2741312741313, Blast_Score=84, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011284
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.100 [H]

Molecular weight: Translated: 29647; Mature: 29516

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRLDESAIPDYPGLLRLDGRVAMVVGAGQGNGRHTAHALASVGARVACVDVDPDLAREI
CCCCCCCCCCCCCCEEEECCEEEEEEECCCCCCCHHHHHHHHCCCEEEEEECCHHHHHHH
AAEVGGLPCVADARRRDDVERIVAETLAAYGRLDAVVDIVGMALWSTLLEVTDEDWDATF
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
GLVLRHAHLITQIVGRQMVAAGGGAMVFTASVSGLTSAPNHAAYGAAKAGLLSLVRTAAV
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH
ELGPSNIRVNAVAPGSIQTPRIMRALQARGDVPPPPAVEPLGRSGEPRDIAGAALFLCSD
HCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
LSRHVTGQTLVVDGGATARFAYMGSGLSSTAPAAPTTSPPAVPPSTATPS
HHHHCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TRLDESAIPDYPGLLRLDGRVAMVVGAGQGNGRHTAHALASVGARVACVDVDPDLAREI
CCCCCCCCCCCCCEEEECCEEEEEEECCCCCCCHHHHHHHHCCCEEEEEECCHHHHHHH
AAEVGGLPCVADARRRDDVERIVAETLAAYGRLDAVVDIVGMALWSTLLEVTDEDWDATF
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
GLVLRHAHLITQIVGRQMVAAGGGAMVFTASVSGLTSAPNHAAYGAAKAGLLSLVRTAAV
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH
ELGPSNIRVNAVAPGSIQTPRIMRALQARGDVPPPPAVEPLGRSGEPRDIAGAALFLCSD
HCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
LSRHVTGQTLVVDGGATARFAYMGSGLSSTAPAAPTTSPPAVPPSTATPS
HHHHCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]