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The map label for this gene is 158317959

Identifier: 158317959

GI number: 158317959

Start: 7553179

End: 7553835

Strand: Reverse

Name: 158317959

Synonym: Franean1_6219

Alternate gene names: NA

Gene position: 7553835-7553179 (Counterclockwise)

Preceding gene: 158317960

Following gene: 158317957

Centisome position: 84.1

GC content: 69.56

Gene sequence:

>657_bases
GTGGGGTCACCGGCCGGCCATGACCGCGACGAGGTCGGCGCCGGTGAGCTGCTGCTCACTTTGCGCGATCAGGGCTGGCC
CAGCGGCGTGCGATCCCGCAACGTGTCGCTCCGGCCCGACGGAGTTCGCTCGTACCTGTTCACGATCGCCAGAAACGTCA
TCACCGACGCCTGGCGGGCCGAGCGGCGACGGCCGTCACTCGGCGACGACGGCGGCGAGGTCGTGGCGGCCGCCCCCGCC
GTCGACGACGTGAGCCAGGCCATCGAGGAGTGGGTGGTCGCGGAGGCGCTAGGTCGTATTTCGCTCGCGCACCGGGCTGT
CGTCCAAGAGCTGTACTACGAGGGAAGGTCGGTACGCGAGGCGGCAGCCCGCCTGGAACTGCCAGAGGGCACCGTCAAGT
CCCGTGTCTACTATGCGATCCGCGCGCTGCGTGACGCCTTCGAGGAGATGACGGTCGGTTCGCCGAACCCGCTCCCGGCG
CCTCGCGGCGGTCGCTGCTGTGCTCGTCCTGTGCGCCGGAATCGGTCTCGTCGTGAACAGTCCCTTTGCCAGCGCACCGA
GTGGGCCCTCCACCTCCTTCGCACCGGAGGTCGCCAGCGTCGACGGCATGACGGAACGAGCGTCCAGCTGGTCGTCGACG
CCGACAACGAAGGCTGA

Upstream 100 bases:

>100_bases
CCGTCGGGCTCCGATGTCGGTTCCTGCATCGCCGGCGCTCCTCGGCAAGTAGGGGCAGAACGTCCGAAAGCTTGTCAGGA
CCGGATCAGGACCGGTCGAT

Downstream 100 bases:

>100_bases
TGTCGTCGGAGCGAGTTCGATCCCAGCGGATGCCATCGACGCGGTTCGAGTCGTCGACCGTGACGGCTTGGTGCTCGCCG
TCGCTCACCCGCGGGGCAGC

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma-70 Family RNA Polymerase; RNA Polymerase; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma Factor; AlteRNAtive RNA Polymerase Sigma Factor SigL; Sigma-70 Region 2 Domain-Containing Protein; Sigma Factor Sigma; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MGSPAGHDRDEVGAGELLLTLRDQGWPSGVRSRNVSLRPDGVRSYLFTIARNVITDAWRAERRRPSLGDDGGEVVAAAPA
VDDVSQAIEEWVVAEALGRISLAHRAVVQELYYEGRSVREAAARLELPEGTVKSRVYYAIRALRDAFEEMTVGSPNPLPA
PRGGRCCARPVRRNRSRREQSLCQRTEWALHLLRTGGRQRRRHDGTSVQLVVDADNEG

Sequences:

>Translated_218_residues
MGSPAGHDRDEVGAGELLLTLRDQGWPSGVRSRNVSLRPDGVRSYLFTIARNVITDAWRAERRRPSLGDDGGEVVAAAPA
VDDVSQAIEEWVVAEALGRISLAHRAVVQELYYEGRSVREAAARLELPEGTVKSRVYYAIRALRDAFEEMTVGSPNPLPA
PRGGRCCARPVRRNRSRREQSLCQRTEWALHLLRTGGRQRRRHDGTSVQLVVDADNEG
>Mature_217_residues
GSPAGHDRDEVGAGELLLTLRDQGWPSGVRSRNVSLRPDGVRSYLFTIARNVITDAWRAERRRPSLGDDGGEVVAAAPAV
DDVSQAIEEWVVAEALGRISLAHRAVVQELYYEGRSVREAAARLELPEGTVKSRVYYAIRALRDAFEEMTVGSPNPLPAP
RGGRCCARPVRRNRSRREQSLCQRTEWALHLLRTGGRQRRRHDGTSVQLVVDADNEG

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24175; Mature: 24044

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSPAGHDRDEVGAGELLLTLRDQGWPSGVRSRNVSLRPDGVRSYLFTIARNVITDAWRA
CCCCCCCCCCCCCCCCEEEEECCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
ERRRPSLGDDGGEVVAAAPAVDDVSQAIEEWVVAEALGRISLAHRAVVQELYYEGRSVRE
HHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
AAARLELPEGTVKSRVYYAIRALRDAFEEMTVGSPNPLPAPRGGRCCARPVRRNRSRREQ
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
SLCQRTEWALHLLRTGGRQRRRHDGTSVQLVVDADNEG
HHHHHHHHHHHHHHHCCHHHHHCCCCEEEEEEECCCCC
>Mature Secondary Structure 
GSPAGHDRDEVGAGELLLTLRDQGWPSGVRSRNVSLRPDGVRSYLFTIARNVITDAWRA
CCCCCCCCCCCCCCCEEEEECCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
ERRRPSLGDDGGEVVAAAPAVDDVSQAIEEWVVAEALGRISLAHRAVVQELYYEGRSVRE
HHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
AAARLELPEGTVKSRVYYAIRALRDAFEEMTVGSPNPLPAPRGGRCCARPVRRNRSRREQ
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
SLCQRTEWALHLLRTGGRQRRRHDGTSVQLVVDADNEG
HHHHHHHHHHHHHHHCCHHHHHCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA