| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158317934
Identifier: 158317934
GI number: 158317934
Start: 7524530
End: 7525528
Strand: Direct
Name: 158317934
Synonym: Franean1_6192
Alternate gene names: NA
Gene position: 7524530-7525528 (Clockwise)
Preceding gene: 158317933
Following gene: 158317936
Centisome position: 83.77
GC content: 64.56
Gene sequence:
>999_bases ATGAGCATTCCGCGGCGTCAGGCGATCAAGATCGGTGCCTATCTGCTGAAGCAGAAAATCGCACGTCGAGACAAGTTCCC GATCACGCTCGAGCTGGAACCGCTGTTCGCGTGCAACCTCTCCTGCGAGGGCTGCGGCAAGATCCAGCACCCCGCGGACG TCCTCAAGCAGCGCATGCCGGTCGAGCAGGCGCTCGCCGCCGTCGACGAGTGCGGCGCGCCCGTCGTGTGTCTGGCGGGT GGCGAGCCGCTGATGCACCCACAGATCGAGCAGATCGTGGAAGGCCTGGTCAAGCGCAAGAAGTTCATCTACCTCTGCAC GAACGCGGTACTGCTCCCACGCAAGATCGACAAGCTGAAGCCCTCGCCGTACCTGTCGCTCGCGGTGCACATCGACGGGC TCGAGGACCGCCACGACGAGTCCGTGGCGAAGAAGGGCGTCTTCGCCCAGGCCGTCGACGCGATCAAGGACGCGCAGGAC CGCGGATTCCGGGTGACGACGAACACCACGTTCTTCAACACCGACACCCCGCAAACCGTCATCGAGGTGCTGGACTTCCT GAACAACGACCTCAATGTCGACGGCATGATGCTCTCGCCGGCCTATGCCTACGAGAAGGCCCCTGAGCAGGACAAGTTCC TGGGCGTCAAGGAGACTCAGGAGCTTTTCCGCAAGGCGTTCGCCGACGGTCGGCGCAAGCGCTGGCGCATCCAGCACTCG CCGCTGTTCCTCGACTTCCTTGAGGGCAAGGTCGACTTCCCCTGCACCGCGTGGGGAATTCCGTCGTACTCCCTCTACGG CTGGCAGAAGCCGTGCTATCTGATGGGTGACGGATACGCCTCGAGCTACCAGGAGCTTCTCGACACCACCGACTGGGAGT CGTACGGCCGTGGCCGCGACCCCCGCTGCGAGAACTGCATGGCCCACTGCGGCTACGAGCCGACGGCCATCGCCGCCACG CTGACCTCGCTGCGGGAGTCCATCCGCGCGACGCGCTGA
Upstream 100 bases:
>100_bases AAGAACTAGATAAGGCTCCTCCTTAGACTTAGGGGAGCGGTACGGCATCGCGACTCCACCACCCACCAGGCGAACGTAGA TCAACACCGGAAGGGTGAAT
Downstream 100 bases:
>100_bases GACACTCGGCGAGCGGATGCGGAAGATGATCTCGGTGACGGCGGTCGTCGCCCTCCGGCCAGAGGGCGACGACCGCCGCA CCGAGGTCCTCCACGCTGCT
Product: radical SAM domain-containing protein
Products: NA
Alternate protein names: Radical SAM Domain-Containing Protein; Radical SAM Family Protein; Radical SAM Domain Protein; Molybdenum Cofactor Biosynthesis Protein A; MoaA/NifB/PqqE Family Protein; MoaA NifB PqqE Radical SAM Superfamily Protein; Co PQQ Synthesis Protein E; Radical S-Adenosylmethionine Superfamily Protein; Iron-Sulfur Oxidoreductase; MoaA/NifB/PqqE Family Fe-S Oxidoreductase; Radical SAM Oxidoreductase; Heme D1 Biosynthesis Protein; Hopanoid Biosynthesis Associated Radical SAM Protein; Heme Biosynthesis Protein; Fe-S Oxidoreductase; Radical SAM Protein; Radical SAM Superfamily; Radical SAM; Radical SAM Family Fe-S Protein
Number of amino acids: Translated: 332; Mature: 331
Protein sequence:
>332_residues MSIPRRQAIKIGAYLLKQKIARRDKFPITLELEPLFACNLSCEGCGKIQHPADVLKQRMPVEQALAAVDECGAPVVCLAG GEPLMHPQIEQIVEGLVKRKKFIYLCTNAVLLPRKIDKLKPSPYLSLAVHIDGLEDRHDESVAKKGVFAQAVDAIKDAQD RGFRVTTNTTFFNTDTPQTVIEVLDFLNNDLNVDGMMLSPAYAYEKAPEQDKFLGVKETQELFRKAFADGRRKRWRIQHS PLFLDFLEGKVDFPCTAWGIPSYSLYGWQKPCYLMGDGYASSYQELLDTTDWESYGRGRDPRCENCMAHCGYEPTAIAAT LTSLRESIRATR
Sequences:
>Translated_332_residues MSIPRRQAIKIGAYLLKQKIARRDKFPITLELEPLFACNLSCEGCGKIQHPADVLKQRMPVEQALAAVDECGAPVVCLAG GEPLMHPQIEQIVEGLVKRKKFIYLCTNAVLLPRKIDKLKPSPYLSLAVHIDGLEDRHDESVAKKGVFAQAVDAIKDAQD RGFRVTTNTTFFNTDTPQTVIEVLDFLNNDLNVDGMMLSPAYAYEKAPEQDKFLGVKETQELFRKAFADGRRKRWRIQHS PLFLDFLEGKVDFPCTAWGIPSYSLYGWQKPCYLMGDGYASSYQELLDTTDWESYGRGRDPRCENCMAHCGYEPTAIAAT LTSLRESIRATR >Mature_331_residues SIPRRQAIKIGAYLLKQKIARRDKFPITLELEPLFACNLSCEGCGKIQHPADVLKQRMPVEQALAAVDECGAPVVCLAGG EPLMHPQIEQIVEGLVKRKKFIYLCTNAVLLPRKIDKLKPSPYLSLAVHIDGLEDRHDESVAKKGVFAQAVDAIKDAQDR GFRVTTNTTFFNTDTPQTVIEVLDFLNNDLNVDGMMLSPAYAYEKAPEQDKFLGVKETQELFRKAFADGRRKRWRIQHSP LFLDFLEGKVDFPCTAWGIPSYSLYGWQKPCYLMGDGYASSYQELLDTTDWESYGRGRDPRCENCMAHCGYEPTAIAATL TSLRESIRATR
Specific function: Unknown
COG id: COG0535
COG function: function code R; Predicted Fe-S oxidoreductases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37417; Mature: 37286
Theoretical pI: Translated: 7.34; Mature: 7.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIPRRQAIKIGAYLLKQKIARRDKFPITLELEPLFACNLSCEGCGKIQHPADVLKQRMP CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEECCCCCCCCCCCCHHHHHHHHCC VEQALAAVDECGAPVVCLAGGEPLMHPQIEQIVEGLVKRKKFIYLCTNAVLLPRKIDKLK HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHEEEEECCCEECCHHHHHCC PSPYLSLAVHIDGLEDRHDESVAKKGVFAQAVDAIKDAQDRGFRVTTNTTFFNTDTPQTV CCCCEEEEEEECCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCEEEEECCEEECCCCHHHH IEVLDFLNNDLNVDGMMLSPAYAYEKAPEQDKFLGVKETQELFRKAFADGRRKRWRIQHS HHHHHHHCCCCCCCCEEECCHHHHHCCCCHHHCCCHHHHHHHHHHHHHCCCHHHEEECCC PLFLDFLEGKVDFPCTAWGIPSYSLYGWQKPCYLMGDGYASSYQELLDTTDWESYGRGRD CEEEEECCCCCCCCEEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCHHHHCCCCC PRCENCMAHCGYEPTAIAATLTSLRESIRATR CCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SIPRRQAIKIGAYLLKQKIARRDKFPITLELEPLFACNLSCEGCGKIQHPADVLKQRMP CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEECCCCCCCCCCCCHHHHHHHHCC VEQALAAVDECGAPVVCLAGGEPLMHPQIEQIVEGLVKRKKFIYLCTNAVLLPRKIDKLK HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHEEEEECCCEECCHHHHHCC PSPYLSLAVHIDGLEDRHDESVAKKGVFAQAVDAIKDAQDRGFRVTTNTTFFNTDTPQTV CCCCEEEEEEECCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCEEEEECCEEECCCCHHHH IEVLDFLNNDLNVDGMMLSPAYAYEKAPEQDKFLGVKETQELFRKAFADGRRKRWRIQHS HHHHHHHCCCCCCCCEEECCHHHHHCCCCHHHCCCHHHHHHHHHHHHHCCCHHHEEECCC PLFLDFLEGKVDFPCTAWGIPSYSLYGWQKPCYLMGDGYASSYQELLDTTDWESYGRGRD CEEEEECCCCCCCCEEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCHHHHCCCCC PRCENCMAHCGYEPTAIAATLTSLRESIRATR CCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA