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The map label for this gene is arnA [H]

Identifier: 158317680

GI number: 158317680

Start: 7214852

End: 7215799

Strand: Direct

Name: arnA [H]

Synonym: Franean1_5938

Alternate gene names: 158317680

Gene position: 7214852-7215799 (Clockwise)

Preceding gene: 158317679

Following gene: 158317690

Centisome position: 80.33

GC content: 67.93

Gene sequence:

>948_bases
ATGCGCGTTGTAATGTTCGGATATCAGACCTGGGGACATCGAACACTGCAGGCGCTGCTCGACTCCGACAATGACGTCAC
TCTCGTCGTCACGCACGAAAAGGGCGAAGGCGATTACGAGAAGATCTGGGACGACTCGGTCGCCGATCTCGCCACCGAGG
CCGGCGTGCCGGTGGCCATCCGGAACCGCCCCGATGACGAGGATCTGATGTCGCTGCTCAAGGCGGCCGACCCCGACGTC
ATCGTCGCCACGAACTGGCGCACCTGGATTCCGCCGCAGATTTTCAACCTGCCTCGACTGGGAACGCTGAACATCCACGA
CTCGCTGCTGCCGGCCTACGCCGGGTTCGCGCCGCTGATCTGGGCGCTCATCAACGGCGAGCCGGAGGTGGGCGTGACCG
CGCACATGATGACCGACGTCCTCGACGCCGGTGACGTCGTCCTGCAGCGGCGGGTGCAGGTCGGCCCGCGCGACACGACG
GCCGACCTGTTCCACCGCACCCTGGCCCTGTTCGGCCCGATGGCTGTGGAGGGCCTGGAGCTGATGGCGTCCGGGCGCAC
CGAGTGGGAGAAGCAGGACCGCTCGAAGGCGAGCTTCTTCCACAAGCGATCGCCGCTGGACAGCCTCATCGACTGGACCT
GGACGGCCGAGGAGCTCGACCGGCTCGTCCGCGCCCAGTGCGACCCGTACCCCAACGCCTACACGTACCGCAACGGCGAG
CGGCTGCGGATCGTCTCCGCGGAGGTGTCGAAGGGCATCTACGGCGGCACTCCCGGACGGATCTTCATCCGGGAGGGTGA
CGGGGTCGTCATCGTGGCCGGCGCCGAGGCGCGGCGCGGCCGCAGCCATGGGCTGCTGGTCCGGACGGTCCGCACCGACG
ACGGGCGCGAGCTGCCGGCGACGGAGTACTTCACCACGATGGGCGGTTACCTTACCCGGCAGCCGTAG

Upstream 100 bases:

>100_bases
CCGATTTCGAGAGCGCGACCGGCCGATCGGCGCATCCACCATGAAGCAGTGTTCCAGAGAAATCACCGCACGAAGCGCCG
ATCAGAGGAGAAGCATCGAC

Downstream 100 bases:

>100_bases
CGGTCGGGGCTCGCCGCCGCCGCCGACGGCACCGGCACCACTGCTGACGCTGGCGGCGACGACGATCGGCGACGAGTCGG
GTGACGCGCGCACGCCGCGC

Product: formyl transferase domain-containing protein

Products: NA

Alternate protein names: UDP-4-amino-4-deoxy-L-arabinose formyltransferase; ArnAFT; UDP-L-Ara4N formyltransferase; UDP-glucuronic acid oxidase, UDP-4-keto-hexauronic acid decarboxylating; ArnADH; UDP-GlcUA decarboxylase; UDP-glucuronic acid dehydrogenase [H]

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MRVVMFGYQTWGHRTLQALLDSDNDVTLVVTHEKGEGDYEKIWDDSVADLATEAGVPVAIRNRPDDEDLMSLLKAADPDV
IVATNWRTWIPPQIFNLPRLGTLNIHDSLLPAYAGFAPLIWALINGEPEVGVTAHMMTDVLDAGDVVLQRRVQVGPRDTT
ADLFHRTLALFGPMAVEGLELMASGRTEWEKQDRSKASFFHKRSPLDSLIDWTWTAEELDRLVRAQCDPYPNAYTYRNGE
RLRIVSAEVSKGIYGGTPGRIFIREGDGVVIVAGAEARRGRSHGLLVRTVRTDDGRELPATEYFTTMGGYLTRQP

Sequences:

>Translated_315_residues
MRVVMFGYQTWGHRTLQALLDSDNDVTLVVTHEKGEGDYEKIWDDSVADLATEAGVPVAIRNRPDDEDLMSLLKAADPDV
IVATNWRTWIPPQIFNLPRLGTLNIHDSLLPAYAGFAPLIWALINGEPEVGVTAHMMTDVLDAGDVVLQRRVQVGPRDTT
ADLFHRTLALFGPMAVEGLELMASGRTEWEKQDRSKASFFHKRSPLDSLIDWTWTAEELDRLVRAQCDPYPNAYTYRNGE
RLRIVSAEVSKGIYGGTPGRIFIREGDGVVIVAGAEARRGRSHGLLVRTVRTDDGRELPATEYFTTMGGYLTRQP
>Mature_315_residues
MRVVMFGYQTWGHRTLQALLDSDNDVTLVVTHEKGEGDYEKIWDDSVADLATEAGVPVAIRNRPDDEDLMSLLKAADPDV
IVATNWRTWIPPQIFNLPRLGTLNIHDSLLPAYAGFAPLIWALINGEPEVGVTAHMMTDVLDAGDVVLQRRVQVGPRDTT
ADLFHRTLALFGPMAVEGLELMASGRTEWEKQDRSKASFFHKRSPLDSLIDWTWTAEELDRLVRAQCDPYPNAYTYRNGE
RLRIVSAEVSKGIYGGTPGRIFIREGDGVVIVAGAEARRGRSHGLLVRTVRTDDGRELPATEYFTTMGGYLTRQP

Specific function: Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabin

COG id: COG0223

COG function: function code J; Methionyl-tRNA formyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the sugar epimerase family. UDP-glucuronic acid decarboxylase subfamily [H]

Homologues:

Organism=Homo sapiens, GI238814322, Length=220, Percent_Identity=30.4545454545455, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI21614513, Length=320, Percent_Identity=25.625, Blast_Score=92, Evalue=8e-19,
Organism=Escherichia coli, GI1788589, Length=286, Percent_Identity=32.5174825174825, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1789683, Length=279, Percent_Identity=30.8243727598566, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1788846, Length=121, Percent_Identity=34.7107438016529, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI133930964, Length=265, Percent_Identity=26.7924528301887, Blast_Score=91, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021168
- InterPro:   IPR001509
- InterPro:   IPR005793
- InterPro:   IPR002376
- InterPro:   IPR011034
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase; PF02911 Formyl_trans_C; PF00551 Formyl_trans_N [H]

EC number: =2.1.2.13; =1.1.1.305 [H]

Molecular weight: Translated: 35163; Mature: 35163

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVVMFGYQTWGHRTLQALLDSDNDVTLVVTHEKGEGDYEKIWDDSVADLATEAGVPVAI
CEEEEEECCHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHCCHHHHHHHHCCCCEEE
RNRPDDEDLMSLLKAADPDVIVATNWRTWIPPQIFNLPRLGTLNIHDSLLPAYAGFAPLI
CCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCCEECCCHHHHHHHHHHHHHH
WALINGEPEVGVTAHMMTDVLDAGDVVLQRRVQVGPRDTTADLFHRTLALFGPMAVEGLE
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHH
LMASGRTEWEKQDRSKASFFHKRSPLDSLIDWTWTAEELDRLVRAQCDPYPNAYTYRNGE
HHHCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEECCCC
RLRIVSAEVSKGIYGGTPGRIFIREGDGVVIVAGAEARRGRSHGLLVRTVRTDDGRELPA
EEEEEEHHHHCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCCH
TEYFTTMGGYLTRQP
HHHHHHHCCEEECCC
>Mature Secondary Structure
MRVVMFGYQTWGHRTLQALLDSDNDVTLVVTHEKGEGDYEKIWDDSVADLATEAGVPVAI
CEEEEEECCHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHCCHHHHHHHHCCCCEEE
RNRPDDEDLMSLLKAADPDVIVATNWRTWIPPQIFNLPRLGTLNIHDSLLPAYAGFAPLI
CCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCCEECCCHHHHHHHHHHHHHH
WALINGEPEVGVTAHMMTDVLDAGDVVLQRRVQVGPRDTTADLFHRTLALFGPMAVEGLE
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHH
LMASGRTEWEKQDRSKASFFHKRSPLDSLIDWTWTAEELDRLVRAQCDPYPNAYTYRNGE
HHHCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEECCCC
RLRIVSAEVSKGIYGGTPGRIFIREGDGVVIVAGAEARRGRSHGLLVRTVRTDDGRELPA
EEEEEEHHHHCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCCH
TEYFTTMGGYLTRQP
HHHHHHHCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA