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The map label for this gene is ydeS [H]

Identifier: 158317650

GI number: 158317650

Start: 7177457

End: 7178059

Strand: Direct

Name: ydeS [H]

Synonym: Franean1_5908

Alternate gene names: 158317650

Gene position: 7177457-7178059 (Clockwise)

Preceding gene: 158317649

Following gene: 158317651

Centisome position: 79.91

GC content: 69.15

Gene sequence:

>603_bases
GTGACGCGGCCGACGCTCGCATCGCCCCGGCCGGGCGGTCGCCCGCGCGACGAGAGCCGCGACGGCGCGATCCGCCAGGC
GACCCTCGAGCTGCTCGCGGAGCACGGCTACGACGGCGTGACCATGGACCGGGTCGCCACCCGCGCCAAGGCCGGGAAGG
CCACCATCTACCGGCGCTGGCCGTCCAAGGTCGCGCTGGTGATGGATTCGATCACCCAGTTCACCGAACAAACGCTGCAG
ATCCCCGACAGCGGCTCGCTGCGGACCGAGATGATCCTGTTCCTGACCGCGTTCCATGAGCTGGTCGGCAGTGAGCAGGG
CCGGATCATGGCCGAGATGGTCTCCGAGATGCCGCGCAATCCGGAGCTGCGCGCCGCCGTGCGCGAGCGCATGTGGAGCC
AGCGCAAGATGATGTCCGAGGTCATCATCACCAGGGGGATCGCGCGCGGTGAGATAACCCCGGAGGCCGACCCGGCCATC
CTGATGGAGATCGGCACCGCGCTGATCCTGCAGCGGCTGCTCATCACCGGGGACCCGGTCGACTCCGCCTTCATCGAGCA
CGTCGTGGACGACGTGATCATCGCCTACGCCAGCCGCGGCTGA

Upstream 100 bases:

>100_bases
CTCGAGGCCAGCCCATGCACAGCGTGCCCGGTTCTCCACCAGTGGTGACTCGCTCACCGGGACCGCCGCGCAGCCGGTTC
GAGAGCCAGGAGGGTGCGCC

Downstream 100 bases:

>100_bases
CCGCGGGGCCCGGCCAGCTCTGAAACGGGCCCGCTGGTAGCGGGCCACCTGGAGACCGCGGCGGCGGGACAACAGCGGGA
CAGGTCCGCGGGAGATCGGC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MTRPTLASPRPGGRPRDESRDGAIRQATLELLAEHGYDGVTMDRVATRAKAGKATIYRRWPSKVALVMDSITQFTEQTLQ
IPDSGSLRTEMILFLTAFHELVGSEQGRIMAEMVSEMPRNPELRAAVRERMWSQRKMMSEVIITRGIARGEITPEADPAI
LMEIGTALILQRLLITGDPVDSAFIEHVVDDVIIAYASRG

Sequences:

>Translated_200_residues
MTRPTLASPRPGGRPRDESRDGAIRQATLELLAEHGYDGVTMDRVATRAKAGKATIYRRWPSKVALVMDSITQFTEQTLQ
IPDSGSLRTEMILFLTAFHELVGSEQGRIMAEMVSEMPRNPELRAAVRERMWSQRKMMSEVIITRGIARGEITPEADPAI
LMEIGTALILQRLLITGDPVDSAFIEHVVDDVIIAYASRG
>Mature_199_residues
TRPTLASPRPGGRPRDESRDGAIRQATLELLAEHGYDGVTMDRVATRAKAGKATIYRRWPSKVALVMDSITQFTEQTLQI
PDSGSLRTEMILFLTAFHELVGSEQGRIMAEMVSEMPRNPELRAAVRERMWSQRKMMSEVIITRGIARGEITPEADPAIL
MEIGTALILQRLLITGDPVDSAFIEHVVDDVIIAYASRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22233; Mature: 22102

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRPTLASPRPGGRPRDESRDGAIRQATLELLAEHGYDGVTMDRVATRAKAGKATIYRRW
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHC
PSKVALVMDSITQFTEQTLQIPDSGSLRTEMILFLTAFHELVGSEQGRIMAEMVSEMPRN
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
PELRAAVRERMWSQRKMMSEVIITRGIARGEITPEADPAILMEIGTALILQRLLITGDPV
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
DSAFIEHVVDDVIIAYASRG
HHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TRPTLASPRPGGRPRDESRDGAIRQATLELLAEHGYDGVTMDRVATRAKAGKATIYRRW
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHC
PSKVALVMDSITQFTEQTLQIPDSGSLRTEMILFLTAFHELVGSEQGRIMAEMVSEMPRN
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
PELRAAVRERMWSQRKMMSEVIITRGIARGEITPEADPAILMEIGTALILQRLLITGDPV
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
DSAFIEHVVDDVIIAYASRG
HHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]