| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158317514
Identifier: 158317514
GI number: 158317514
Start: 7006267
End: 7007820
Strand: Reverse
Name: 158317514
Synonym: Franean1_5768
Alternate gene names: NA
Gene position: 7007820-7006267 (Counterclockwise)
Preceding gene: 158317515
Following gene: 158317513
Centisome position: 78.02
GC content: 74.39
Gene sequence:
>1554_bases GTGACGCGCCCCAGCATCACACCGGCGGAACCGGCCGTGCCGGAACCGCCGGCCTCGGCGGCAGGCGCTGGCGGCACGCC GTCGCCGTCGCTGTCCGAGCGGCTGTCGGAATGGGCGAGCACGCTCCGGTACCGCGACCTGCCCGACCGAGTCGTCGACC TGGCGAAAAGCCAGATCCTCTCGCAGCTCGCCGCGATCCGGGCCGGCGCGTCGCACGAACTGGGCCGGCTGCTCGTCGCG GCTTTCGGCGACCCGGTGGGCTCCGACCCGGGCAGGGCGGCCTGCGTGTTCGCCGGCCTCGGCTCGTGGCTCAACCTGGA CGACACTGCCTACGCCGGCCACCTGTCGAACTCGACCGTGGGCGTCGGACTGGCCTACGCCGACGCCCTCGGACTCGACG GGCGCGGGCTGCTGACGGCGGTCGTCGCGGCCAACGAATGCGCGGCTCGGGTCACCGCCGCGGCCACGCTGGGGCCCTTT CGCGGCCAGACGGCCGCGCACACGAGCTTGGTCGGGGCGGTGGCCGCCCGGCTGCACTGCGCGGAAGTACCAGCCACCAC CTGGACCGACGCGATCGGCCTGGCGATGGTCGCGCCGCAGTGGACGCTGCTGCACGCCTTCCTCGGCGGCGACGGCCGGC TGTTGTCCTCGCTCGCACCGGTACGAGCCGCCATGGACGCTTGCGACGCCGCCGAGGCCGGTCTGCGCGGGGTCGCCGAC GCCTTGGAACACCCGGACGGATTCCTGGCGCGCTTCGCCGCGGTGCCGCTGCCGGAGGTCGTCGCCGCGCACCTCGGCCG CCGCTGGCACACCGACACGCTGTCGTTCAAGGTCCGGCCAGGCGGCCCGGGAATAGACAGCGCGGTGGACTGCGCCCTCG AGATCCGGCGTCAGGCCGGCGACCTGCGGCCAGCCGACGTCGCCGACATCCTGGTCGAGACTTCGGCCTACACCGTGTAC GTCGGCCGGCAGCTCGACCGCCACGGCGCCGGGCCGGCCACCCCGGCCGCGGTCCTGCCGCTGTCGGTGCCCTACGCCGT GGCGACCGCGCTGCTCGTCGGCGACCTCGTCGTGGCCGACTTCGCCGCGCCGGCTAAGCACGACCTGCGGCGCTGGCAGC TCGCCGGGAAGGTCCGGGTGGTGGAAGACGCTGGGATGACGTTCGACCTGGTCAGTAGCGACGCGCCGTTCGGGGACGCG CTACGGCAGGCGGGTCGGCGGGCCGAGGGCTGGCTGACTCACTTCGTCGGAGCGGAGGCCGCCGACATGCTTGACAAGCT CGGTGAGCCGGCGGCCTCCTTCGAGCACGCCAGGAAGTACACGGGTGCCAGGGTGACCGTGCGAGCCGCCGACGGGCGCT CGTTCTCGGCCCGGCGTGACATCCCGATCGGCGCGGCCGGGCCGGACACGCGAGCCCGGCACCGCGAACTCGTCCAGGCG AAGTTCGCGGCCACCGGAGGACCGGACGTGGTCGCCCGGACCTGCGCGGACCTCGAACACGCCGACCCTGGCCAGGTCGC GGCGATGATCCGGGCGACGCTGCGCCTCCCGTGA
Upstream 100 bases:
>100_bases TGCTCCGGCACGACCGTTCGCGGCTCACCGTCGACGTTCTCCCGCGCGCGCTGCCGGTGCTGTGCCAGCCCGTGCTGGCG GCGGCTGGGCAGGAGACGCC
Downstream 100 bases:
>100_bases CGCGGCCAGCGGTGGGTCCGACGGCCCGGGACCGGCTCGCGTCGGTCCCGGGCCGTCAGCTCCGCTGGCTAGTCGCTGGT TGGTCAGGTCGGGGCACGTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 517; Mature: 516
Protein sequence:
>517_residues MTRPSITPAEPAVPEPPASAAGAGGTPSPSLSERLSEWASTLRYRDLPDRVVDLAKSQILSQLAAIRAGASHELGRLLVA AFGDPVGSDPGRAACVFAGLGSWLNLDDTAYAGHLSNSTVGVGLAYADALGLDGRGLLTAVVAANECAARVTAAATLGPF RGQTAAHTSLVGAVAARLHCAEVPATTWTDAIGLAMVAPQWTLLHAFLGGDGRLLSSLAPVRAAMDACDAAEAGLRGVAD ALEHPDGFLARFAAVPLPEVVAAHLGRRWHTDTLSFKVRPGGPGIDSAVDCALEIRRQAGDLRPADVADILVETSAYTVY VGRQLDRHGAGPATPAAVLPLSVPYAVATALLVGDLVVADFAAPAKHDLRRWQLAGKVRVVEDAGMTFDLVSSDAPFGDA LRQAGRRAEGWLTHFVGAEAADMLDKLGEPAASFEHARKYTGARVTVRAADGRSFSARRDIPIGAAGPDTRARHRELVQA KFAATGGPDVVARTCADLEHADPGQVAAMIRATLRLP
Sequences:
>Translated_517_residues MTRPSITPAEPAVPEPPASAAGAGGTPSPSLSERLSEWASTLRYRDLPDRVVDLAKSQILSQLAAIRAGASHELGRLLVA AFGDPVGSDPGRAACVFAGLGSWLNLDDTAYAGHLSNSTVGVGLAYADALGLDGRGLLTAVVAANECAARVTAAATLGPF RGQTAAHTSLVGAVAARLHCAEVPATTWTDAIGLAMVAPQWTLLHAFLGGDGRLLSSLAPVRAAMDACDAAEAGLRGVAD ALEHPDGFLARFAAVPLPEVVAAHLGRRWHTDTLSFKVRPGGPGIDSAVDCALEIRRQAGDLRPADVADILVETSAYTVY VGRQLDRHGAGPATPAAVLPLSVPYAVATALLVGDLVVADFAAPAKHDLRRWQLAGKVRVVEDAGMTFDLVSSDAPFGDA LRQAGRRAEGWLTHFVGAEAADMLDKLGEPAASFEHARKYTGARVTVRAADGRSFSARRDIPIGAAGPDTRARHRELVQA KFAATGGPDVVARTCADLEHADPGQVAAMIRATLRLP >Mature_516_residues TRPSITPAEPAVPEPPASAAGAGGTPSPSLSERLSEWASTLRYRDLPDRVVDLAKSQILSQLAAIRAGASHELGRLLVAA FGDPVGSDPGRAACVFAGLGSWLNLDDTAYAGHLSNSTVGVGLAYADALGLDGRGLLTAVVAANECAARVTAAATLGPFR GQTAAHTSLVGAVAARLHCAEVPATTWTDAIGLAMVAPQWTLLHAFLGGDGRLLSSLAPVRAAMDACDAAEAGLRGVADA LEHPDGFLARFAAVPLPEVVAAHLGRRWHTDTLSFKVRPGGPGIDSAVDCALEIRRQAGDLRPADVADILVETSAYTVYV GRQLDRHGAGPATPAAVLPLSVPYAVATALLVGDLVVADFAAPAKHDLRRWQLAGKVRVVEDAGMTFDLVSSDAPFGDAL RQAGRRAEGWLTHFVGAEAADMLDKLGEPAASFEHARKYTGARVTVRAADGRSFSARRDIPIGAAGPDTRARHRELVQAK FAATGGPDVVARTCADLEHADPGQVAAMIRATLRLP
Specific function: Unknown
COG id: COG2079
COG function: function code R; Uncharacterized protein involved in propionate catabolism
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53565; Mature: 53434
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRPSITPAEPAVPEPPASAAGAGGTPSPSLSERLSEWASTLRYRDLPDRVVDLAKSQIL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH SQLAAIRAGASHELGRLLVAAFGDPVGSDPGRAACVFAGLGSWLNLDDTAYAGHLSNSTV HHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCC GVGLAYADALGLDGRGLLTAVVAANECAARVTAAATLGPFRGQTAAHTSLVGAVAARLHC EEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH AEVPATTWTDAIGLAMVAPQWTLLHAFLGGDGRLLSSLAPVRAAMDACDAAEAGLRGVAD HCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALEHPDGFLARFAAVPLPEVVAAHLGRRWHTDTLSFKVRPGGPGIDSAVDCALEIRRQAG HHHCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC DLRPADVADILVETSAYTVYVGRQLDRHGAGPATPAAVLPLSVPYAVATALLVGDLVVAD CCCCCHHHHHHHHCCEEEEEECCCHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHH FAAPAKHDLRRWQLAGKVRVVEDAGMTFDLVSSDAPFGDALRQAGRRAEGWLTHFVGAEA HCCCHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCHHHHHHHCCCHHHHHHHHHHCCHH ADMLDKLGEPAASFEHARKYTGARVTVRAADGRSFSARRDIPIGAAGPDTRARHRELVQA HHHHHHHCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH KFAATGGPDVVARTCADLEHADPGQVAAMIRATLRLP HHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure TRPSITPAEPAVPEPPASAAGAGGTPSPSLSERLSEWASTLRYRDLPDRVVDLAKSQIL CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH SQLAAIRAGASHELGRLLVAAFGDPVGSDPGRAACVFAGLGSWLNLDDTAYAGHLSNSTV HHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCC GVGLAYADALGLDGRGLLTAVVAANECAARVTAAATLGPFRGQTAAHTSLVGAVAARLHC EEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH AEVPATTWTDAIGLAMVAPQWTLLHAFLGGDGRLLSSLAPVRAAMDACDAAEAGLRGVAD HCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALEHPDGFLARFAAVPLPEVVAAHLGRRWHTDTLSFKVRPGGPGIDSAVDCALEIRRQAG HHHCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC DLRPADVADILVETSAYTVYVGRQLDRHGAGPATPAAVLPLSVPYAVATALLVGDLVVAD CCCCCHHHHHHHHCCEEEEEECCCHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHH FAAPAKHDLRRWQLAGKVRVVEDAGMTFDLVSSDAPFGDALRQAGRRAEGWLTHFVGAEA HCCCHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCHHHHHHHCCCHHHHHHHHHHCCHH ADMLDKLGEPAASFEHARKYTGARVTVRAADGRSFSARRDIPIGAAGPDTRARHRELVQA HHHHHHHCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH KFAATGGPDVVARTCADLEHADPGQVAAMIRATLRLP HHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA