| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is 158317513
Identifier: 158317513
GI number: 158317513
Start: 7004881
End: 7006116
Strand: Reverse
Name: 158317513
Synonym: Franean1_5767
Alternate gene names: NA
Gene position: 7006116-7004881 (Counterclockwise)
Preceding gene: 158317514
Following gene: 158317511
Centisome position: 78.0
GC content: 71.93
Gene sequence:
>1236_bases ATGGCCACTCCTCGCAAGCCGACCGCGCCGACGGCGGAGGCGATCGACAGATTCTGCGGCCATTTCGATGACTTGTTCGG CCGGTTGGCTGAGCGCACCGCGCTGCGGCAGTATCTGATCGGCCTGTTGCCGCCCCGGGAACGGAACAAGACGCTGACGG AGCTTGCCGCCCTGGTCCCCGGCGCGGACCGGCAGCGGCTGCACCACTTCCTGCACGACGCGCCCTGGGATCCCGACGCC CTGGGTGCGCGGCGGGTGGACCTGTGGCATCGGCACCCGGAGCTGGGGCCGCATGGCAACGGGGTGCTCATCATCGACGA GACCGGGGACCGCAAACGCGGCCATGGCATCGTGCTGGCCGCCCAGCAGTACATCGGCAAGCTCGGTCGCACCGCCAACG GCGTTGTGGCCGTCACCAGTCACTGGGCGGACGGCAGCCGCCACGTGCCGCTGGGGGTGCGGCCCTACCGGCCCGCCTCC CGCCTACCCGCCGGCAAGGCGGACCCGGCGTTCGCCACCAAACCGGAGCTGGCCTGGGACCTGATCGAGGAAGCCCGCGG CGCCGGAGTGCCTTTCCGGGCGGTGGTCGCCGACTGCGTCTACGGGGAGAACCCGAAGCTCGAGGGGCGTCTGCGGGCGG CCAGGATCCGCTACGTGCTGGCTCTGCGTCCCCGCCACGGCACCTGGCAGGTCGTCGCCGATCCCGCTCACCCGCCGGCG TTCACCCCCGCCGAGGCCGCCGCCCGCCTGCCCCTGGCGGACTGGCGGCGCCTGGTGCTGACCGACAGCCACGGCCGGCC GCTGGTGCGCCACGTCGCCGAGCTGGAACTGGGCCCCTGCTATGGACCCACCCGCGGCACCCGCCTGATCGCCGCCACCG CCGACCCGAGGGTCCTCACCGCCGACTCGACCTGGTTCATGGCCACCAACCTCTCGACCGCCGAGGCGGACGCGGGGCGA GGTCTACCGGATCTACCGGCTACGGGACTGGATCGAGCACTACTACAAGCCGGCCAAGCACGAGCTGGGCTGGGCGGACT TCCAGGTCCGTTCCGAACAGGCCATCGTGCGCCACTGGCAGCTGGTCATGCTGGCGTTCACCTTCAGCCTGCTGAACGCG CCACCCTCCGACCACGCCCAGGAAACACCCCGCGAGGACCGCGGGGCGGCGGGGGGAAAATCCACGGCGCCGCATCGTCT GGCAGGACACACTGCGACAGGTCCGCGGCTGGCTGA
Upstream 100 bases:
>100_bases GGCCGTCAGCTCCGCTGGCTAGTCGCTGGTTGGTCAGGTCGGGGCACGTGGACGTACGGTTGGTGCTGTCTGGCTGGGCC GTTCCGGTGGGAGGTGCCCG
Downstream 100 bases:
>100_bases GCCCCTGGGCGCGTCTACAGCTGTACTGGCACCGCTGGTCGACCGCCCCACCCCCACCGGAACTGGCAGCACTGCTTGAC CACGTGGGCCACTCCCACCC
Product: transposase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 411; Mature: 410
Protein sequence:
>411_residues MATPRKPTAPTAEAIDRFCGHFDDLFGRLAERTALRQYLIGLLPPRERNKTLTELAALVPGADRQRLHHFLHDAPWDPDA LGARRVDLWHRHPELGPHGNGVLIIDETGDRKRGHGIVLAAQQYIGKLGRTANGVVAVTSHWADGSRHVPLGVRPYRPAS RLPAGKADPAFATKPELAWDLIEEARGAGVPFRAVVADCVYGENPKLEGRLRAARIRYVLALRPRHGTWQVVADPAHPPA FTPAEAAARLPLADWRRLVLTDSHGRPLVRHVAELELGPCYGPTRGTRLIAATADPRVLTADSTWFMATNLSTAEADAGR GLPDLPATGLDRALLQAGQARAGLGGLPGPFRTGHRAPLAAGHAGVHLQPAERATLRPRPGNTPRGPRGGGGKIHGAASS GRTHCDRSAAG
Sequences:
>Translated_411_residues MATPRKPTAPTAEAIDRFCGHFDDLFGRLAERTALRQYLIGLLPPRERNKTLTELAALVPGADRQRLHHFLHDAPWDPDA LGARRVDLWHRHPELGPHGNGVLIIDETGDRKRGHGIVLAAQQYIGKLGRTANGVVAVTSHWADGSRHVPLGVRPYRPAS RLPAGKADPAFATKPELAWDLIEEARGAGVPFRAVVADCVYGENPKLEGRLRAARIRYVLALRPRHGTWQVVADPAHPPA FTPAEAAARLPLADWRRLVLTDSHGRPLVRHVAELELGPCYGPTRGTRLIAATADPRVLTADSTWFMATNLSTAEADAGR GLPDLPATGLDRALLQAGQARAGLGGLPGPFRTGHRAPLAAGHAGVHLQPAERATLRPRPGNTPRGPRGGGGKIHGAASS GRTHCDRSAAG >Mature_410_residues ATPRKPTAPTAEAIDRFCGHFDDLFGRLAERTALRQYLIGLLPPRERNKTLTELAALVPGADRQRLHHFLHDAPWDPDAL GARRVDLWHRHPELGPHGNGVLIIDETGDRKRGHGIVLAAQQYIGKLGRTANGVVAVTSHWADGSRHVPLGVRPYRPASR LPAGKADPAFATKPELAWDLIEEARGAGVPFRAVVADCVYGENPKLEGRLRAARIRYVLALRPRHGTWQVVADPAHPPAF TPAEAAARLPLADWRRLVLTDSHGRPLVRHVAELELGPCYGPTRGTRLIAATADPRVLTADSTWFMATNLSTAEADAGRG LPDLPATGLDRALLQAGQARAGLGGLPGPFRTGHRAPLAAGHAGVHLQPAERATLRPRPGNTPRGPRGGGGKIHGAASSG RTHCDRSAAG
Specific function: Involved in the transposition of the insertion sequence [H]
COG id: COG5659
COG function: function code L; FOG: Transposase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012337 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44034; Mature: 43902
Theoretical pI: Translated: 10.93; Mature: 10.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATPRKPTAPTAEAIDRFCGHFDDLFGRLAERTALRQYLIGLLPPRERNKTLTELAALVP CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC GADRQRLHHFLHDAPWDPDALGARRVDLWHRHPELGPHGNGVLIIDETGDRKRGHGIVLA CCCHHHHHHHHHCCCCCCHHCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCEEEEE AQQYIGKLGRTANGVVAVTSHWADGSRHVPLGVRPYRPASRLPAGKADPAFATKPELAWD HHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHH LIEEARGAGVPFRAVVADCVYGENPKLEGRLRAARIRYVLALRPRHGTWQVVADPAHPPA HHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHEEEEEEEEECCCCCCEEEEECCCCCCC FTPAEAAARLPLADWRRLVLTDSHGRPLVRHVAELELGPCYGPTRGTRLIAATADPRVLT CCCHHHHHCCCHHHCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEE ADSTWFMATNLSTAEADAGRGLPDLPATGLDRALLQAGQARAGLGGLPGPFRTGHRAPLA ECCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC AGHAGVHLQPAERATLRPRPGNTPRGPRGGGGKIHGAASSGRTHCDRSAAG CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC >Mature Secondary Structure ATPRKPTAPTAEAIDRFCGHFDDLFGRLAERTALRQYLIGLLPPRERNKTLTELAALVP CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC GADRQRLHHFLHDAPWDPDALGARRVDLWHRHPELGPHGNGVLIIDETGDRKRGHGIVLA CCCHHHHHHHHHCCCCCCHHCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCEEEEE AQQYIGKLGRTANGVVAVTSHWADGSRHVPLGVRPYRPASRLPAGKADPAFATKPELAWD HHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHH LIEEARGAGVPFRAVVADCVYGENPKLEGRLRAARIRYVLALRPRHGTWQVVADPAHPPA HHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHEEEEEEEEECCCCCCEEEEECCCCCCC FTPAEAAARLPLADWRRLVLTDSHGRPLVRHVAELELGPCYGPTRGTRLIAATADPRVLT CCCHHHHHCCCHHHCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEE ADSTWFMATNLSTAEADAGRGLPDLPATGLDRALLQAGQARAGLGGLPGPFRTGHRAPLA ECCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC AGHAGVHLQPAERATLRPRPGNTPRGPRGGGGKIHGAASSGRTHCDRSAAG CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1662761 [H]