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The map label for this gene is redD [H]

Identifier: 158317500

GI number: 158317500

Start: 6990452

End: 6991282

Strand: Direct

Name: redD [H]

Synonym: Franean1_5752

Alternate gene names: 158317500

Gene position: 6990452-6991282 (Clockwise)

Preceding gene: 158317496

Following gene: 158317512

Centisome position: 77.83

GC content: 66.06

Gene sequence:

>831_bases
ATGCCCACTTTTCATCACCGTCAGGCAACGGCAGATCGCCATTCGTGGCTCTCATTGAGCGAGGTGCAGGTGAAGTTCAG
GATCCTCGGCCCCGTCGAATCCGAGGTCGACAGCGGCGTGCGAGCCATTCCGGGCGAGCGGCAACGCCGGTTGCTGGCAA
CCTTGCTGGTGAGCGGCAACCGGCCGGTGCCGGCGGAACAGCTCTACGCCGAACTGTGGGGCGAGGATCCGCCGCCTACC
GTCGAGAACGCGTTGCAGGCCCACGTCTACCGGCTGCGACGTACTCTGCAGCGCCTCGCCGGCCCGCACGACTCACCCCC
GGCGCTGGTCACCCGCACCCCCGGCTACCTGCTGGAGATCGATCCCGTCGACCTCGACATGAATATCTTTCGGGAACGGA
TCGCACAGTCGCGTGCCGTGCGGACGACCGATCCCGGGTTCGCCGTGAGCGCCCTGGACGAAGCCCTGGATCTGTGGCGC
GGATCGCCGCTGCAGGACGTCGCGGCCGGCCCGATCTGCCAGAGCGTCTCGCTGCAGCTCAACGAGGAACACGTGACCGC
GCTCGAGGACAAGCTGTGGCTGAGCATCGAGCACGAGGACCCGGTCCACGTCATCGGCGACCTCAAACGGATGAGTTCGG
TCCATCCGTGGCGCGAACGGATCACCGAGATGCTCATGCTGGCGCTCTACCGCTGCGGCCGCCAGGCAGAGGCGGTAGAG
GCCTACAACGACGTGCGCCGACGCCTGGACCGCGAACTCGGCATGGAACCGTCCGTCCAACTCAAGGAACGCTTCCAGGA
GATCCTCAACCAGGCTTCCTCGTTGCACTAG

Upstream 100 bases:

>100_bases
ACGCACGCTTCGCCACGCACGTCCCTCGGCAACGCACACCTCGGCAACGCAGCCCCTCAGCGATGCACACCGTACGTCTG
CGGCGCTGCTCGGCGCCGCC

Downstream 100 bases:

>100_bases
GGATCAGTCGGACGTGGTGCCACCGGGCCTGATCCGACGGAAACCGGCGTAGGGCACGAGCGCCTCCGGCAGGAGGACCG
AGCCGTCGGCTTGGCGGCCC

Product: SARP family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MPTFHHRQATADRHSWLSLSEVQVKFRILGPVESEVDSGVRAIPGERQRRLLATLLVSGNRPVPAEQLYAELWGEDPPPT
VENALQAHVYRLRRTLQRLAGPHDSPPALVTRTPGYLLEIDPVDLDMNIFRERIAQSRAVRTTDPGFAVSALDEALDLWR
GSPLQDVAAGPICQSVSLQLNEEHVTALEDKLWLSIEHEDPVHVIGDLKRMSSVHPWRERITEMLMLALYRCGRQAEAVE
AYNDVRRRLDRELGMEPSVQLKERFQEILNQASSLH

Sequences:

>Translated_276_residues
MPTFHHRQATADRHSWLSLSEVQVKFRILGPVESEVDSGVRAIPGERQRRLLATLLVSGNRPVPAEQLYAELWGEDPPPT
VENALQAHVYRLRRTLQRLAGPHDSPPALVTRTPGYLLEIDPVDLDMNIFRERIAQSRAVRTTDPGFAVSALDEALDLWR
GSPLQDVAAGPICQSVSLQLNEEHVTALEDKLWLSIEHEDPVHVIGDLKRMSSVHPWRERITEMLMLALYRCGRQAEAVE
AYNDVRRRLDRELGMEPSVQLKERFQEILNQASSLH
>Mature_275_residues
PTFHHRQATADRHSWLSLSEVQVKFRILGPVESEVDSGVRAIPGERQRRLLATLLVSGNRPVPAEQLYAELWGEDPPPTV
ENALQAHVYRLRRTLQRLAGPHDSPPALVTRTPGYLLEIDPVDLDMNIFRERIAQSRAVRTTDPGFAVSALDEALDLWRG
SPLQDVAAGPICQSVSLQLNEEHVTALEDKLWLSIEHEDPVHVIGDLKRMSSVHPWRERITEMLMLALYRCGRQAEAVEA
YNDVRRRLDRELGMEPSVQLKERFQEILNQASSLH

Specific function: The redD protein is probably one of several delicately balanced regulatory factors that contribute to the control of the biosynthesis of the antibiotic undecylprodigiosin (Red) in S.coelicolor [H]

COG id: COG3629

COG function: function code T; DNA-binding transcriptional activator of the SARP family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AfsR/DnrI/RedD regulatory family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005158
- InterPro:   IPR001867
- InterPro:   IPR016032
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03704 BTAD; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 31345; Mature: 31214

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTFHHRQATADRHSWLSLSEVQVKFRILGPVESEVDSGVRAIPGERQRRLLATLLVSGN
CCCCCCCHHHHHHHHCCCHHHHEEEEEEECCHHHHHHCCCCCCCCHHHHHHHHHHHHCCC
RPVPAEQLYAELWGEDPPPTVENALQAHVYRLRRTLQRLAGPHDSPPALVTRTPGYLLEI
CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEEE
DPVDLDMNIFRERIAQSRAVRTTDPGFAVSALDEALDLWRGSPLQDVAAGPICQSVSLQL
CCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHEE
NEEHVTALEDKLWLSIEHEDPVHVIGDLKRMSSVHPWRERITEMLMLALYRCGRQAEAVE
CHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHH
AYNDVRRRLDRELGMEPSVQLKERFQEILNQASSLH
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PTFHHRQATADRHSWLSLSEVQVKFRILGPVESEVDSGVRAIPGERQRRLLATLLVSGN
CCCCCCHHHHHHHHCCCHHHHEEEEEEECCHHHHHHCCCCCCCCHHHHHHHHHHHHCCC
RPVPAEQLYAELWGEDPPPTVENALQAHVYRLRRTLQRLAGPHDSPPALVTRTPGYLLEI
CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEEE
DPVDLDMNIFRERIAQSRAVRTTDPGFAVSALDEALDLWRGSPLQDVAAGPICQSVSLQL
CCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHEE
NEEHVTALEDKLWLSIEHEDPVHVIGDLKRMSSVHPWRERITEMLMLALYRCGRQAEAVE
CHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHH
AYNDVRRRLDRELGMEPSVQLKERFQEILNQASSLH
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2294088; 12000953 [H]