Click here to switch to the map view.

The map label for this gene is crtB [H]

Identifier: 158317465

GI number: 158317465

Start: 6938508

End: 6939647

Strand: Reverse

Name: crtB [H]

Synonym: Franean1_5717

Alternate gene names: 158317465

Gene position: 6939647-6938508 (Counterclockwise)

Preceding gene: 158317466

Following gene: 158317464

Centisome position: 77.26

GC content: 74.56

Gene sequence:

>1140_bases
ATGACCGCAATCGACGCCCGAACCGGCCCACCGCGACCGTCTGCCCACCCCGGCGCGACCGACCTCACCACGCCCACCGA
GCAGGTGTTGCTGGCCGCGCCCGCCGAGAACTTCCCGGTCGCCTCGCGGCTGCTGCCCGCCGCGACCCGGGATCACCTCA
ACGCGCTGTACGTCTTCGGACGTCTCGTTGACGACATCGGTGACGAGGCCCCCGGCGACCGCCTGGCGCTGCTCGACGAG
CTTGCCGCCGACCTCGAGCTGATCTGGTCGGGCGGCGAGCCGAAGCTGCCCGTCCACCGTCGGCTCGCGCACACAGTGCG
GGCCTGCGACCTGCCGGCCGAGCCGTTCCGGCGGCTCGTGCAGGCCAACCAGCAGGACCAGATCGTCACCAGGTACGACA
CCTACGAGGACCTCGTGCAGTACTGCACCCTCTCGGCGGATCCGATCGGCCGCATGGTGCTCGGGGTGTTCGGTCTGGCG
ACTCCGGCGCGGATCGCGCTGTCCGACCGCATCTGTACCGCGCTGCAGCTCGCGGAGCACTTCCAGGACGTCGCCGAGGA
CCTCGCGGCCGGCCGGATCTACGTGCCGCTGGAGGACCTGGACGCGTTCGGGGTGACCGAGGCCGACCTGGCCGCGCCGG
TCGCCTCGCCCGCGGTGCGGCACCTGATGGCCTTCGAAGTGGCCCGGGCTCGGACCTTGCTGGACCAGGGGGCACCGCTG
GTGAACCTGGTCGGTGGCCGGCTGCGGCTGGCGATGGCCGGATTCGTGGGGGGCGGCCGGGCCGCGCTCGACGCGATCCG
CCGCGCCGACTACGACATGCTCGGTGGCGCGCCCAAGGCCCCCAAGCCCCGGATGGCGGCCTTCGCCGCGGCCGCGTGGG
CCCGGTCGCTGGTGCCCGGGCAGGCCGCGGCCGCCCGCGCCGCCGGCACCGCCGCCACCGCCGCCACTGCTTCAAGCACT
ACCGCTCCCAGCACTACCGCTCCCGGCGCCGCCGCTGCTGGCGGCACCGGTTCCAGCGGCCCTGTTCCCAGCGGCACCGT
TCCCACCACCACCCCCGGCGGGGGCGCCGCGGTGGCGAGTGCCGTCCCGGCTCCGGCGCCCGCCGGATCCGACGTCGACG
TCCCGGAGGGTGCCAGATGA

Upstream 100 bases:

>100_bases
CGCGCCATGACCGGCACGTGCCACCACCGCACGGACAACGCACACGACGCACACCGCACCGCGCACCCGGAGCGCAGACC
GCCACGTTAAGGAGAGGCGT

Downstream 100 bases:

>100_bases
GCGCGGGTGTCCCGGGCAGCTCCACCGTCGCCGAGGCCTACGCCTCCTGCGAGGCGTTGACGCGGGAGGCCGCGCGGAAC
TTCAGCTACGGCATCCGCCT

Product: squalene/phytoene synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MTAIDARTGPPRPSAHPGATDLTTPTEQVLLAAPAENFPVASRLLPAATRDHLNALYVFGRLVDDIGDEAPGDRLALLDE
LAADLELIWSGGEPKLPVHRRLAHTVRACDLPAEPFRRLVQANQQDQIVTRYDTYEDLVQYCTLSADPIGRMVLGVFGLA
TPARIALSDRICTALQLAEHFQDVAEDLAAGRIYVPLEDLDAFGVTEADLAAPVASPAVRHLMAFEVARARTLLDQGAPL
VNLVGGRLRLAMAGFVGGGRAALDAIRRADYDMLGGAPKAPKPRMAAFAAAAWARSLVPGQAAAARAAGTAATAATASST
TAPSTTAPGAAAAGGTGSSGPVPSGTVPTTTPGGGAAVASAVPAPAPAGSDVDVPEGAR

Sequences:

>Translated_379_residues
MTAIDARTGPPRPSAHPGATDLTTPTEQVLLAAPAENFPVASRLLPAATRDHLNALYVFGRLVDDIGDEAPGDRLALLDE
LAADLELIWSGGEPKLPVHRRLAHTVRACDLPAEPFRRLVQANQQDQIVTRYDTYEDLVQYCTLSADPIGRMVLGVFGLA
TPARIALSDRICTALQLAEHFQDVAEDLAAGRIYVPLEDLDAFGVTEADLAAPVASPAVRHLMAFEVARARTLLDQGAPL
VNLVGGRLRLAMAGFVGGGRAALDAIRRADYDMLGGAPKAPKPRMAAFAAAAWARSLVPGQAAAARAAGTAATAATASST
TAPSTTAPGAAAAGGTGSSGPVPSGTVPTTTPGGGAAVASAVPAPAPAGSDVDVPEGAR
>Mature_378_residues
TAIDARTGPPRPSAHPGATDLTTPTEQVLLAAPAENFPVASRLLPAATRDHLNALYVFGRLVDDIGDEAPGDRLALLDEL
AADLELIWSGGEPKLPVHRRLAHTVRACDLPAEPFRRLVQANQQDQIVTRYDTYEDLVQYCTLSADPIGRMVLGVFGLAT
PARIALSDRICTALQLAEHFQDVAEDLAAGRIYVPLEDLDAFGVTEADLAAPVASPAVRHLMAFEVARARTLLDQGAPLV
NLVGGRLRLAMAGFVGGGRAALDAIRRADYDMLGGAPKAPKPRMAAFAAAAWARSLVPGQAAAARAAGTAATAATASSTT
APSTTAPGAAAAGGTGSSGPVPSGTVPTTTPGGGAAVASAVPAPAPAGSDVDVPEGAR

Specific function: Catalyzes the reaction from prephytoene diphosphate to phytoene [H]

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phytoene/squalene synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002060
- InterPro:   IPR019845
- InterPro:   IPR008949 [H]

Pfam domain/function: PF00494 SQS_PSY [H]

EC number: =2.5.1.32 [H]

Molecular weight: Translated: 38742; Mature: 38611

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAIDARTGPPRPSAHPGATDLTTPTEQVLLAAPAENFPVASRLLPAATRDHLNALYVFG
CCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
RLVDDIGDEAPGDRLALLDELAADLELIWSGGEPKLPVHRRLAHTVRACDLPAEPFRRLV
HHHHHHCCCCCCCHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
QANQQDQIVTRYDTYEDLVQYCTLSADPIGRMVLGVFGLATPARIALSDRICTALQLAEH
HCCCCCCEEHHHCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
FQDVAEDLAAGRIYVPLEDLDAFGVTEADLAAPVASPAVRHLMAFEVARARTLLDQGAPL
HHHHHHHHHCCEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
VNLVGGRLRLAMAGFVGGGRAALDAIRRADYDMLGGAPKAPKPRMAAFAAAAWARSLVPG
HHHHCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC
QAAAARAAGTAATAATASSTTAPSTTAPGAAAAGGTGSSGPVPSGTVPTTTPGGGAAVAS
HHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
AVPAPAPAGSDVDVPEGAR
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TAIDARTGPPRPSAHPGATDLTTPTEQVLLAAPAENFPVASRLLPAATRDHLNALYVFG
CCCCCCCCCCCCCCCCCCCCCCCCHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
RLVDDIGDEAPGDRLALLDELAADLELIWSGGEPKLPVHRRLAHTVRACDLPAEPFRRLV
HHHHHHCCCCCCCHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
QANQQDQIVTRYDTYEDLVQYCTLSADPIGRMVLGVFGLATPARIALSDRICTALQLAEH
HCCCCCCEEHHHCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
FQDVAEDLAAGRIYVPLEDLDAFGVTEADLAAPVASPAVRHLMAFEVARARTLLDQGAPL
HHHHHHHHHCCEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
VNLVGGRLRLAMAGFVGGGRAALDAIRRADYDMLGGAPKAPKPRMAAFAAAAWARSLVPG
HHHHCCHHHHHHHHHCCCCHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC
QAAAARAAGTAATAATASSTTAPSTTAPGAAAAGGTGSSGPVPSGTVPTTTPGGGAAVAS
HHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
AVPAPAPAGSDVDVPEGAR
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8018713; 8905231 [H]