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The map label for this gene is 158317350

Identifier: 158317350

GI number: 158317350

Start: 6792603

End: 6793442

Strand: Direct

Name: 158317350

Synonym: Franean1_5600

Alternate gene names: NA

Gene position: 6792603-6793442 (Clockwise)

Preceding gene: 158317343

Following gene: 158317351

Centisome position: 75.62

GC content: 74.88

Gene sequence:

>840_bases
GTGACCGGGCCGACATCACCCCACACCCTGCCGGCGCCCGGCCGCGGCTCCGCGCGGGCCGGCGCCTTACCCCTCGACCG
CTCCGGGCCCGCTCCGGGAATCGCTCCCGGTGCGGGCCGGCGCGGCGAGAGCGCCGACGCGGCCGTCCTGGATGCCGCCG
CCGCGTCGCTGCTCAGCGTCGGCGTGCGTCGGACGACCGCCACCGACGTGGCCCGGCGCGCCGGCGTCAGCCGGATGACG
CTGTACCGGCGCTGGCCCGACCTGCGCTCCCTTGTCGGCGACGTGATGACGCGTGAGTGGGGCCGGATCGTCACGGCCGC
GGCGCGGGCGGCCGAGCCGTCCCTGGCCGCCGGCACGCGGGCCGGCCTGGTGCGCTACCTGGTCACCGCGGCGCAGACCT
TCCGCGCGAACCCGCTGTTCCGCAAGATCATTGAGACGGACCCGGAGCTGCTGGTCCCCTACGTCCTGGAGCGCCTCGGC
GCGACCCAGCGGCTCGTCCTGGAGCTGCTGTGCGAGCAGCTGCGCGAGGCGCAGGCGGGCGGCGCCGTCCGGGCGGGTGA
CCCGGCAGCCCAGGCACGGATGGTGCTGCTCGTCGTGCAGTCGTACGTTCTCTCCGCGGACGCGCTGGGCGACGAGATCA
CCGAGGAGGCACTGGCGCGTGAGCTCTACCTGACACTGGACGGCTACCTGGCCCCGCGCGCCGGCGAGACAGCCGAGGCC
GCCTTCGACGCCGCTGACGCAACTGACGCTGTCAGGGCCGTTGACGTCGTTGAGGCCGTCGAGGCTGCTGACGCAGTTGA
CGAGATCCGGCCGATCGAGCACCCGGGAGCGCCGTCATGA

Upstream 100 bases:

>100_bases
TAACAGTGTCACACGATCCCGGCCCGGGCACAGTCAGGGCTGAGCGGGCGGAGCGCCTCGACGGGTGGGAGCGGCGAGAG
CCGCGGGAGGGAGACAGCCG

Downstream 100 bases:

>100_bases
GCACACCGTTCGACCGCTCGTCGCTCACCGCCGACCGCCGTGCCCGCGAGCTCGGCGAGCTCGCGGGCGGCGAGGCCGTC
GATCTCCTCGTCGTCGGCGG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MTGPTSPHTLPAPGRGSARAGALPLDRSGPAPGIAPGAGRRGESADAAVLDAAAASLLSVGVRRTTATDVARRAGVSRMT
LYRRWPDLRSLVGDVMTREWGRIVTAAARAAEPSLAAGTRAGLVRYLVTAAQTFRANPLFRKIIETDPELLVPYVLERLG
ATQRLVLELLCEQLREAQAGGAVRAGDPAAQARMVLLVVQSYVLSADALGDEITEEALARELYLTLDGYLAPRAGETAEA
AFDAADATDAVRAVDVVEAVEAADAVDEIRPIEHPGAPS

Sequences:

>Translated_279_residues
MTGPTSPHTLPAPGRGSARAGALPLDRSGPAPGIAPGAGRRGESADAAVLDAAAASLLSVGVRRTTATDVARRAGVSRMT
LYRRWPDLRSLVGDVMTREWGRIVTAAARAAEPSLAAGTRAGLVRYLVTAAQTFRANPLFRKIIETDPELLVPYVLERLG
ATQRLVLELLCEQLREAQAGGAVRAGDPAAQARMVLLVVQSYVLSADALGDEITEEALARELYLTLDGYLAPRAGETAEA
AFDAADATDAVRAVDVVEAVEAADAVDEIRPIEHPGAPS
>Mature_278_residues
TGPTSPHTLPAPGRGSARAGALPLDRSGPAPGIAPGAGRRGESADAAVLDAAAASLLSVGVRRTTATDVARRAGVSRMTL
YRRWPDLRSLVGDVMTREWGRIVTAAARAAEPSLAAGTRAGLVRYLVTAAQTFRANPLFRKIIETDPELLVPYVLERLGA
TQRLVLELLCEQLREAQAGGAVRAGDPAAQARMVLLVVQSYVLSADALGDEITEEALARELYLTLDGYLAPRAGETAEAA
FDAADATDAVRAVDVVEAVEAADAVDEIRPIEHPGAPS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 29177; Mature: 29046

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGPTSPHTLPAPGRGSARAGALPLDRSGPAPGIAPGAGRRGESADAAVLDAAAASLLSV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
GVRRTTATDVARRAGVSRMTLYRRWPDLRSLVGDVMTREWGRIVTAAARAAEPSLAAGTR
HHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
AGLVRYLVTAAQTFRANPLFRKIIETDPELLVPYVLERLGATQRLVLELLCEQLREAQAG
HHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
GAVRAGDPAAQARMVLLVVQSYVLSADALGDEITEEALARELYLTLDGYLAPRAGETAEA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
AFDAADATDAVRAVDVVEAVEAADAVDEIRPIEHPGAPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TGPTSPHTLPAPGRGSARAGALPLDRSGPAPGIAPGAGRRGESADAAVLDAAAASLLSV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
GVRRTTATDVARRAGVSRMTLYRRWPDLRSLVGDVMTREWGRIVTAAARAAEPSLAAGTR
HHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
AGLVRYLVTAAQTFRANPLFRKIIETDPELLVPYVLERLGATQRLVLELLCEQLREAQAG
HHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
GAVRAGDPAAQARMVLLVVQSYVLSADALGDEITEEALARELYLTLDGYLAPRAGETAEA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
AFDAADATDAVRAVDVVEAVEAADAVDEIRPIEHPGAPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]