Click here to switch to the map view.

The map label for this gene is ydcM [C]

Identifier: 158317315

GI number: 158317315

Start: 6744597

End: 6744803

Strand: Reverse

Name: ydcM [C]

Synonym: Franean1_5563

Alternate gene names: 158317315

Gene position: 6744803-6744597 (Counterclockwise)

Preceding gene: 158317316

Following gene: 158317313

Centisome position: 75.09

GC content: 66.67

Gene sequence:

>207_bases
GTGACAGCGGTCGACCGTTTCTACCCGTCGAGCAAAACGTGCTCGGCCTGCGGATCGGTCGTGGAGAACCTGCCGCTGAA
TGTCCGGGAGTGGACCTGCCGCTGCGGCGCGGTCCACGACCGGGACATCAACGCGGCACGGAACATTCTGGCCGCGGGGC
TCGCGGTGTCCGCCTGTGGAGATGGAGTGAGACCACCTCGCTGCTGA

Upstream 100 bases:

>100_bases
GACGCGGGCATCACAGCGCTGGTCACCTTGTCGACCGGGGAGAAAGTCACCAACCCCCGGCACGAGCGCCGCGACCGTGT
CCGGCTGGTGCGGTCGCACC

Downstream 100 bases:

>100_bases
AGCGAGGAGGCGTCCGTTGACGAAGCAGGAACCCGGATCGCGAGGTACGGGAATCCCCGGAGTTCACACCGGGGAGGATG
TCAAACGGGCGGCGGTGCGA

Product: transposase IS605 OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 68; Mature: 67

Protein sequence:

>68_residues
MTAVDRFYPSSKTCSACGSVVENLPLNVREWTCRCGAVHDRDINAARNILAAGLAVSACGDGVRPPRC

Sequences:

>Translated_68_residues
MTAVDRFYPSSKTCSACGSVVENLPLNVREWTCRCGAVHDRDINAARNILAAGLAVSACGDGVRPPRC
>Mature_67_residues
TAVDRFYPSSKTCSACGSVVENLPLNVREWTCRCGAVHDRDINAARNILAAGLAVSACGDGVRPPRC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 7223; Mature: 7092

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
10.3 %Cys+Met (Translated Protein)
9.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
9.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAVDRFYPSSKTCSACGSVVENLPLNVREWTCRCGAVHDRDINAARNILAAGLAVSACG
CCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC
DGVRPPRC
CCCCCCCC
>Mature Secondary Structure 
TAVDRFYPSSKTCSACGSVVENLPLNVREWTCRCGAVHDRDINAARNILAAGLAVSACG
CCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC
DGVRPPRC
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]