| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158317274
Identifier: 158317274
GI number: 158317274
Start: 6689148
End: 6690857
Strand: Reverse
Name: 158317274
Synonym: Franean1_5522
Alternate gene names: NA
Gene position: 6690857-6689148 (Counterclockwise)
Preceding gene: 158317275
Following gene: 158317273
Centisome position: 74.49
GC content: 72.11
Gene sequence:
>1710_bases ATGACCGGCCTCACCTCGACTGACCCTGACGCTTCCGCCGGCCGTGACGATCGTCCGGGTTCCCGGGCGGCGCGGATGCG GACGCCGCTCGCTCGTCAGGTCGTGGAAACGGTCGCAGTGGAGAACGGGGTGTGCGTCCGGCCGATGGCGATGCGCCGGA CGAACCTCGACACCGGCGAGACCGAGATCATCCCCGTACCGTGCGGCGCCACGCTGGCGAGCAAGTGTCCGACCTGCGCG GAGAAGGCCCGGCGGCTGCGGATGGCGCAGTGCAAGGCAGGCTGGCATCTCGACGACGAACCGCTACCCGACCCGGACCC GCCCACGGATGAGGCGAAGACCCTCGCGGGCTTCCGTGCCGATCTCGAAACCGTCCGGATCGACGCTGAACGCGACGGGG ACGCGGCCGGCGTCGCCGAGATCGACGAACTCATCGGCCAGGTGGACGAGGAACTCAACGCGCTGGGTGTGCGGGGGAAG GCGGCGCCGGAGGATCGGGATCGGCCTCGCCGTGTCCGCTCGACCCGCCGGCGGCAGGATGCCCCCGACCTGCCCCGGCT CCCGGTGGACAAGCGGACAGTCGGGCGGACCTTCGAAGCGGCGGACGGCACCACCTGGCGGCCGTCGATGTTCCTGACCC TGACCTGCGACTCGTACGGGCGGGTCACGAGTGAGGGAACCCCGGTCGATCCGGGCTCGTACGACTACCGGCGGGCGGCC CGGGACGCGATCCACTTCCCGAAGCTGATCGACCGGTTCTGGCAGAACCTGCGCAGGGCGGTCGGCTGGGATGTGCAGTA CTTCGCCACCCTCGAACCGCAACGGCGGCTCGCCCCGCACCTGCACGCGGCCATCCGCGGAACGGTGCCCCGGGTCCTGC TGCGGCAGGTGGCGGCGGCCACGTATCAGCAGGTCTGGTGGCCGTCGTGTGACCGGCCGGTCTATGACGACACGTGCCTC CCGGTCTGGGACGACACTGCGGCCGGCTACCTCGACCCGGACACGTCCCGGCCGCTCCCGACCTGGGATGAGGCAGTGGA CGCGATCGGCGACGATGCCGAACCGGCCCACGTCGTCCGCTTCGGGCCCCAGCTCCGCGCGGACGGTGTCACGGCGAACT CGGCGAACACCGGCCGGATGATCGGCTACCTGACCAAGTATCTGGTGAAGAGCCTCGACGCCTGCCACGCCGTCACTACC GACGCCCAGCGGCGGCACGTCGATCGGCTCGCGGACGCGCTGCGCCACGAACCGTGCTCGCCCACCTGCGCGAACTGGCT GCGCTACGGCGTCCAACCACGCCACCCGAAACCGGGCCTCGTCCCGGGCCGGTGCCGGGGCAAGGTCCACCGGCGCGAGA CGCTCGGGTTCGGTGGCCGGCGGGTGCTCGTCTCGCGGCGCTGGTCCGGCAAAACCCTGACCGACCACAAGCACGACCGG GTCGCGTTCATCCGGGAGCAGCTCGAAGCCCTCGGCCAGGTGGCGACCGGCCCGGCAGCCACTGGCACCGACCCGGCACG GACGGTGTGGACGCTGCTCCGGCCCGGTGACCCGGCGGCCCCTCGCCGCGAACACCTGCTGTTGCAGGCAGTCGCGCAAC GGCATGCCTGGCGCGCACAACTCGACGCGGCCCGCGCTGCCACGGCCGGCACCGTCACGACCGGCGGATCTCCGGGAACC GGCCCACCGGCGGTGGCTGACGCTGCCTGA
Upstream 100 bases:
>100_bases CCCGGAACCGCCTGCGGCTGCGCCTTCTTCATCACTGCGCCGGCCCGTCCGTCGGCCGGTGTGCGCCTGGACCTCGATGA TCGGGAGGACCTCACCTCTG
Downstream 100 bases:
>100_bases GCTGTCGTCTCGATCGCCTGGAAGGCAAGGATGACCAAGCTTCTCGTGACACCGGCCGAAGCCGCTGAGATCCTCGCGCT CAGCCGGAGCACCGTGTACG
Product: replication initiator protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 569; Mature: 568
Protein sequence:
>569_residues MTGLTSTDPDASAGRDDRPGSRAARMRTPLARQVVETVAVENGVCVRPMAMRRTNLDTGETEIIPVPCGATLASKCPTCA EKARRLRMAQCKAGWHLDDEPLPDPDPPTDEAKTLAGFRADLETVRIDAERDGDAAGVAEIDELIGQVDEELNALGVRGK AAPEDRDRPRRVRSTRRRQDAPDLPRLPVDKRTVGRTFEAADGTTWRPSMFLTLTCDSYGRVTSEGTPVDPGSYDYRRAA RDAIHFPKLIDRFWQNLRRAVGWDVQYFATLEPQRRLAPHLHAAIRGTVPRVLLRQVAAATYQQVWWPSCDRPVYDDTCL PVWDDTAAGYLDPDTSRPLPTWDEAVDAIGDDAEPAHVVRFGPQLRADGVTANSANTGRMIGYLTKYLVKSLDACHAVTT DAQRRHVDRLADALRHEPCSPTCANWLRYGVQPRHPKPGLVPGRCRGKVHRRETLGFGGRRVLVSRRWSGKTLTDHKHDR VAFIREQLEALGQVATGPAATGTDPARTVWTLLRPGDPAAPRREHLLLQAVAQRHAWRAQLDAARAATAGTVTTGGSPGT GPPAVADAA
Sequences:
>Translated_569_residues MTGLTSTDPDASAGRDDRPGSRAARMRTPLARQVVETVAVENGVCVRPMAMRRTNLDTGETEIIPVPCGATLASKCPTCA EKARRLRMAQCKAGWHLDDEPLPDPDPPTDEAKTLAGFRADLETVRIDAERDGDAAGVAEIDELIGQVDEELNALGVRGK AAPEDRDRPRRVRSTRRRQDAPDLPRLPVDKRTVGRTFEAADGTTWRPSMFLTLTCDSYGRVTSEGTPVDPGSYDYRRAA RDAIHFPKLIDRFWQNLRRAVGWDVQYFATLEPQRRLAPHLHAAIRGTVPRVLLRQVAAATYQQVWWPSCDRPVYDDTCL PVWDDTAAGYLDPDTSRPLPTWDEAVDAIGDDAEPAHVVRFGPQLRADGVTANSANTGRMIGYLTKYLVKSLDACHAVTT DAQRRHVDRLADALRHEPCSPTCANWLRYGVQPRHPKPGLVPGRCRGKVHRRETLGFGGRRVLVSRRWSGKTLTDHKHDR VAFIREQLEALGQVATGPAATGTDPARTVWTLLRPGDPAAPRREHLLLQAVAQRHAWRAQLDAARAATAGTVTTGGSPGT GPPAVADAA >Mature_568_residues TGLTSTDPDASAGRDDRPGSRAARMRTPLARQVVETVAVENGVCVRPMAMRRTNLDTGETEIIPVPCGATLASKCPTCAE KARRLRMAQCKAGWHLDDEPLPDPDPPTDEAKTLAGFRADLETVRIDAERDGDAAGVAEIDELIGQVDEELNALGVRGKA APEDRDRPRRVRSTRRRQDAPDLPRLPVDKRTVGRTFEAADGTTWRPSMFLTLTCDSYGRVTSEGTPVDPGSYDYRRAAR DAIHFPKLIDRFWQNLRRAVGWDVQYFATLEPQRRLAPHLHAAIRGTVPRVLLRQVAAATYQQVWWPSCDRPVYDDTCLP VWDDTAAGYLDPDTSRPLPTWDEAVDAIGDDAEPAHVVRFGPQLRADGVTANSANTGRMIGYLTKYLVKSLDACHAVTTD AQRRHVDRLADALRHEPCSPTCANWLRYGVQPRHPKPGLVPGRCRGKVHRRETLGFGGRRVLVSRRWSGKTLTDHKHDRV AFIREQLEALGQVATGPAATGTDPARTVWTLLRPGDPAAPRREHLLLQAVAQRHAWRAQLDAARAATAGTVTTGGSPGTG PPAVADAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62474; Mature: 62343
Theoretical pI: Translated: 8.54; Mature: 8.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGLTSTDPDASAGRDDRPGSRAARMRTPLARQVVETVAVENGVCVRPMAMRRTNLDTGE CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHCCCCCCC TEIIPVPCGATLASKCPTCAEKARRLRMAQCKAGWHLDDEPLPDPDPPTDEAKTLAGFRA CEEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH DLETVRIDAERDGDAAGVAEIDELIGQVDEELNALGVRGKAAPEDRDRPRRVRSTRRRQD CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC APDLPRLPVDKRTVGRTFEAADGTTWRPSMFLTLTCDSYGRVTSEGTPVDPGSYDYRRAA CCCCCCCCCCHHHHCCEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHH RDAIHFPKLIDRFWQNLRRAVGWDVQYFATLEPQRRLAPHLHAAIRGTVPRVLLRQVAAA HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH TYQQVWWPSCDRPVYDDTCLPVWDDTAAGYLDPDTSRPLPTWDEAVDAIGDDAEPAHVVR HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEE FGPQLRADGVTANSANTGRMIGYLTKYLVKSLDACHAVTTDAQRRHVDRLADALRHEPCS ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCC PTCANWLRYGVQPRHPKPGLVPGRCRGKVHRRETLGFGGRRVLVSRRWSGKTLTDHKHDR HHHHHHHHHCCCCCCCCCCCCCCHHCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHH VAFIREQLEALGQVATGPAATGTDPARTVWTLLRPGDPAAPRREHLLLQAVAQRHAWRAQ HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH LDAARAATAGTVTTGGSPGTGPPAVADAA HHHHHHHCCCCEECCCCCCCCCCCCCCCC >Mature Secondary Structure TGLTSTDPDASAGRDDRPGSRAARMRTPLARQVVETVAVENGVCVRPMAMRRTNLDTGE CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHCCCCCCC TEIIPVPCGATLASKCPTCAEKARRLRMAQCKAGWHLDDEPLPDPDPPTDEAKTLAGFRA CEEEEECCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH DLETVRIDAERDGDAAGVAEIDELIGQVDEELNALGVRGKAAPEDRDRPRRVRSTRRRQD CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC APDLPRLPVDKRTVGRTFEAADGTTWRPSMFLTLTCDSYGRVTSEGTPVDPGSYDYRRAA CCCCCCCCCCHHHHCCEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHH RDAIHFPKLIDRFWQNLRRAVGWDVQYFATLEPQRRLAPHLHAAIRGTVPRVLLRQVAAA HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH TYQQVWWPSCDRPVYDDTCLPVWDDTAAGYLDPDTSRPLPTWDEAVDAIGDDAEPAHVVR HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEE FGPQLRADGVTANSANTGRMIGYLTKYLVKSLDACHAVTTDAQRRHVDRLADALRHEPCS ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCC PTCANWLRYGVQPRHPKPGLVPGRCRGKVHRRETLGFGGRRVLVSRRWSGKTLTDHKHDR HHHHHHHHHCCCCCCCCCCCCCCHHCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHH VAFIREQLEALGQVATGPAATGTDPARTVWTLLRPGDPAAPRREHLLLQAVAQRHAWRAQ HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH LDAARAATAGTVTTGGSPGTGPPAVADAA HHHHHHHCCCCEECCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA