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The map label for this gene is orn [H]

Identifier: 158317263

GI number: 158317263

Start: 6676231

End: 6676863

Strand: Direct

Name: orn [H]

Synonym: Franean1_5510

Alternate gene names: 158317263

Gene position: 6676231-6676863 (Clockwise)

Preceding gene: 158317262

Following gene: 158317265

Centisome position: 74.33

GC content: 69.19

Gene sequence:

>633_bases
GTGACGACAGCGACGGAAATCCCTAATGTGAACGGGATGGATCGCCTGGTTTGGATCGACTGCGAGATGACCGGCCTGGA
TGCCGGTTCCGACCTGCTGCTCGAGGTCGCCTGCCTGGTGACCGACAGCGAGCTCACCGTGCTGGACGAAGGCATCGACC
TCGTGCTGGCGGCCCCGGACGCGGCCCTCGACCAGATGCTCCCGGTGGTCCGCGAGATGCACGAGACCTCCGGGCTCACC
GAGGCCGTGCGCGGCTCCGACCTCAAGCTCGACGAGGCCGAGGAGCAACTCCTCAGCTACATCCGCCGGTTCGTCCCGGA
GGCACGCAAGGCCCCGCTGTGTGGGAACTCGATCGCGACCGACCGCACGTTCATCGCCCGCTACCTGCCCCAGCTCGACA
CCTTCCTGCACTACCGCATGATCGACGTCTCCTCGATCAAGGAGCTGGCCCGGCGCTGGTACCCGCGGGCGTACTACGCG
GCCCCGGTGAAGTCGGGCGGGCACCGCGCCCTGGCCGACATCCGGGAGAGCATCGAGGAGCTGCGGTACTACCGCGAGAT
CCTCTTCGTGCCCCAGCCCGGCCCGACCACTGACGCGGCCCGCGCCGCGGCCGCCGCGATCCGCGCCTCCTGA

Upstream 100 bases:

>100_bases
CGGCCTGAGCACCGCGACTGGAAGCAACCCCACCTCACGGTGACTATGGAGGCAGGTCGGGACGGGACGCGGTGGGCGGG
GCCGGATCCGGAGGCGGTAC

Downstream 100 bases:

>100_bases
CAGCCGCGCCGCCGGCGTTCACCGAACCCCCGGCGCCCACCAGACCCCCGGGGCCCAGCGGAGCCACCCGCGGACCGCCA
CCCGCGGACCGCCACCGGAT

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MTTATEIPNVNGMDRLVWIDCEMTGLDAGSDLLLEVACLVTDSELTVLDEGIDLVLAAPDAALDQMLPVVREMHETSGLT
EAVRGSDLKLDEAEEQLLSYIRRFVPEARKAPLCGNSIATDRTFIARYLPQLDTFLHYRMIDVSSIKELARRWYPRAYYA
APVKSGGHRALADIRESIEELRYYREILFVPQPGPTTDAARAAAAAIRAS

Sequences:

>Translated_210_residues
MTTATEIPNVNGMDRLVWIDCEMTGLDAGSDLLLEVACLVTDSELTVLDEGIDLVLAAPDAALDQMLPVVREMHETSGLT
EAVRGSDLKLDEAEEQLLSYIRRFVPEARKAPLCGNSIATDRTFIARYLPQLDTFLHYRMIDVSSIKELARRWYPRAYYA
APVKSGGHRALADIRESIEELRYYREILFVPQPGPTTDAARAAAAAIRAS
>Mature_209_residues
TTATEIPNVNGMDRLVWIDCEMTGLDAGSDLLLEVACLVTDSELTVLDEGIDLVLAAPDAALDQMLPVVREMHETSGLTE
AVRGSDLKLDEAEEQLLSYIRRFVPEARKAPLCGNSIATDRTFIARYLPQLDTFLHYRMIDVSSIKELARRWYPRAYYAA
PVKSGGHRALADIRESIEELRYYREILFVPQPGPTTDAARAAAAAIRAS

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=175, Percent_Identity=50.2857142857143, Blast_Score=190, Evalue=8e-49,
Organism=Escherichia coli, GI87082382, Length=173, Percent_Identity=46.242774566474, Blast_Score=157, Evalue=6e-40,
Organism=Caenorhabditis elegans, GI17557752, Length=176, Percent_Identity=46.0227272727273, Blast_Score=162, Evalue=1e-40,
Organism=Saccharomyces cerevisiae, GI6323088, Length=183, Percent_Identity=38.7978142076503, Blast_Score=135, Evalue=4e-33,
Organism=Drosophila melanogaster, GI21355135, Length=179, Percent_Identity=48.0446927374302, Blast_Score=175, Evalue=2e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 23314; Mature: 23183

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTATEIPNVNGMDRLVWIDCEMTGLDAGSDLLLEVACLVTDSELTVLDEGIDLVLAAPD
CCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCEEEEECCC
AALDQMLPVVREMHETSGLTEAVRGSDLKLDEAEEQLLSYIRRFVPEARKAPLCGNSIAT
HHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCHH
DRTFIARYLPQLDTFLHYRMIDVSSIKELARRWYPRAYYAAPVKSGGHRALADIRESIEE
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHH
LRYYREILFVPQPGPTTDAARAAAAAIRAS
HHHHHHHEECCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
TTATEIPNVNGMDRLVWIDCEMTGLDAGSDLLLEVACLVTDSELTVLDEGIDLVLAAPD
CCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCEEEEECCC
AALDQMLPVVREMHETSGLTEAVRGSDLKLDEAEEQLLSYIRRFVPEARKAPLCGNSIAT
HHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCHH
DRTFIARYLPQLDTFLHYRMIDVSSIKELARRWYPRAYYAAPVKSGGHRALADIRESIEE
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHH
LRYYREILFVPQPGPTTDAARAAAAAIRAS
HHHHHHHEECCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA