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The map label for this gene is yeaM [H]

Identifier: 158317137

GI number: 158317137

Start: 6491836

End: 6492549

Strand: Direct

Name: yeaM [H]

Synonym: Franean1_5383

Alternate gene names: 158317137

Gene position: 6491836-6492549 (Clockwise)

Preceding gene: 158317136

Following gene: 158317138

Centisome position: 72.28

GC content: 69.19

Gene sequence:

>714_bases
GTGGCCAGCGGTTGGCATTCGCACGAGGTTCACCAGCTGGAGTACGCGTTCGAAGGCATCGTCCACGTCGAGACGGCGAC
GGCGCGTTATCTCCTCCCGCCCCAGCAGGCCGTCTGGATCCCAGCCGGGATGGTGCACTCCAGCACGATGACCAACGTCA
AGGCCGTCGGGGTCTTCTTCGACCCTGCGATGGGCCTGCCGGCGGGCGACCGGGTCCGCATCCTCGCCGCCGCACCGGTG
ATCCGGGAGATGATCTTGTACGCCAAGCGGTGGCCGATCAGCCGGACGGTGCAGGACCCGATGGCCGACACCTTCTTCGA
AGCCCTCGCCCACCTCGTCGTCGAATGGCTCGACCGCGAGACCCCGCTGTGCCTGCCAACCAGCCGCGACCCGCTCGTGG
CCGCGGCCATGGATTACACCAACGAGCACCTGGCCGAGGTGTCCCTGCCCAAGGTGTGCGCGGCTATCGGGGCGTCGGAG
CGCTCGCTGCGCCGGGCGTTCGCCGCCGCGACCGGCATGTCCTGGCGCCGGTACCACCTCGAGAGCCGCCTGCTGAAAGC
CATGGTCCTGCTCGCGCAGGACGGCCAGAGCCAGAACGTCACCGCTATCGCCATTGCCGTCGGCTTCCAGAGCGTGAGCG
CCTTCACGCGGGCGTTCGGCCAGTACGCGGGGGAGACGCCTACCGCCTACCGCCAGCGCGTCTGCGCCGAATGA

Upstream 100 bases:

>100_bases
TTCTTCCCCGACCTCGCCCATCGCGGCCAGTCTGCGGCACCAGGGTGTTGACGCATCGGTCGTGCGAGCTGGCACGTACG
CCCTGGGGGTCGGCCGCGAA

Downstream 100 bases:

>100_bases
GCCCGTTCGCCGGTGGGTTACGCCGGGCGGTGCACCGCGAACAATGCGGCGCTCGGGACGCTGCCGACTACGTATCCGGC
ATGGAGACGAGCTTCCTGGT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MASGWHSHEVHQLEYAFEGIVHVETATARYLLPPQQAVWIPAGMVHSSTMTNVKAVGVFFDPAMGLPAGDRVRILAAAPV
IREMILYAKRWPISRTVQDPMADTFFEALAHLVVEWLDRETPLCLPTSRDPLVAAAMDYTNEHLAEVSLPKVCAAIGASE
RSLRRAFAAATGMSWRRYHLESRLLKAMVLLAQDGQSQNVTAIAIAVGFQSVSAFTRAFGQYAGETPTAYRQRVCAE

Sequences:

>Translated_237_residues
MASGWHSHEVHQLEYAFEGIVHVETATARYLLPPQQAVWIPAGMVHSSTMTNVKAVGVFFDPAMGLPAGDRVRILAAAPV
IREMILYAKRWPISRTVQDPMADTFFEALAHLVVEWLDRETPLCLPTSRDPLVAAAMDYTNEHLAEVSLPKVCAAIGASE
RSLRRAFAAATGMSWRRYHLESRLLKAMVLLAQDGQSQNVTAIAIAVGFQSVSAFTRAFGQYAGETPTAYRQRVCAE
>Mature_236_residues
ASGWHSHEVHQLEYAFEGIVHVETATARYLLPPQQAVWIPAGMVHSSTMTNVKAVGVFFDPAMGLPAGDRVRILAAAPVI
REMILYAKRWPISRTVQDPMADTFFEALAHLVVEWLDRETPLCLPTSRDPLVAAAMDYTNEHLAEVSLPKVCAAIGASER
SLRRAFAAATGMSWRRYHLESRLLKAMVLLAQDGQSQNVTAIAIAVGFQSVSAFTRAFGQYAGETPTAYRQRVCAE

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=238, Percent_Identity=28.1512605042017, Blast_Score=73, Evalue=1e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 26098; Mature: 25967

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASGWHSHEVHQLEYAFEGIVHVETATARYLLPPQQAVWIPAGMVHSSTMTNVKAVGVFF
CCCCCCCCHHHHHHHHHHCEEEEEECCEEEECCCCCEEEECCCHHHCCHHCCCEEEEEEE
DPAMGLPAGDRVRILAAAPVIREMILYAKRWPISRTVQDPMADTFFEALAHLVVEWLDRE
CCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
TPLCLPTSRDPLVAAAMDYTNEHLAEVSLPKVCAAIGASERSLRRAFAAATGMSWRRYHL
CCEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHH
ESRLLKAMVLLAQDGQSQNVTAIAIAVGFQSVSAFTRAFGQYAGETPTAYRQRVCAE
HHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCC
>Mature Secondary Structure 
ASGWHSHEVHQLEYAFEGIVHVETATARYLLPPQQAVWIPAGMVHSSTMTNVKAVGVFF
CCCCCCCHHHHHHHHHHCEEEEEECCEEEECCCCCEEEECCCHHHCCHHCCCEEEEEEE
DPAMGLPAGDRVRILAAAPVIREMILYAKRWPISRTVQDPMADTFFEALAHLVVEWLDRE
CCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
TPLCLPTSRDPLVAAAMDYTNEHLAEVSLPKVCAAIGASERSLRRAFAAATGMSWRRYHL
CCEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHH
ESRLLKAMVLLAQDGQSQNVTAIAIAVGFQSVSAFTRAFGQYAGETPTAYRQRVCAE
HHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]