| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is lcfB [H]
Identifier: 158317097
GI number: 158317097
Start: 6438561
End: 6441308
Strand: Reverse
Name: lcfB [H]
Synonym: Franean1_5341
Alternate gene names: 158317097
Gene position: 6441308-6438561 (Counterclockwise)
Preceding gene: 158317098
Following gene: 158317096
Centisome position: 71.71
GC content: 71.87
Gene sequence:
>2748_bases ATGGCCTCTGTCGGACCGCCCCGCCCGGGCTCCCCCGCGTTTCTGGCGTCCTCGCTCGAGCGGTACGGAGAGCAGACGGC GATCATCACCGCCGAGGGCGAGCTGTCGTACCGGAAGCTGGGGGCCAGGGTCACCGCCGCCGCCGAGCGAATCGGTGGCG AGCGACGCCTGGTGCTGCTCGTGGCGGCCAACACGGTCGACGTCCTGGTCATGTATCTGGCGGCACTGTCGGCCGGGCAC GCGGTCCTGCTCGTGCCCGGCGACACCTCGGCGCCGACCGGTGCCTCGACGTCGGTCGACGCCCTGATCGACGCCTACGA CCCGGATGTCGTCATCCGGCCCGCGGGCCCGGCGACCCATGTGGAGCAGCGACGCACAGGCACGCGGCACGTTCTGCACC CTGAGCTGGCGCTGCTGCTGAGCACCTCCGGCTCGACGGGCTCACCAAAACTGGTCCGGCTGTCGTACACGAACCTGCAG GCCAATGCGGAGTCGATCGCCGAGTATCTCGACGTGCGGCCCAGCGACCGCGCCGCGACGACCCTGCCCATGTACTACTG CTACGGGCTGTCGGTCATCCACAGCCACCTGTTACGCGGAGCCGGGCTGGTTCTGACGTCGCTGTCAGTCATGGACGCCT GCTTCTGGGCGCTGTTCCGGAAGGCCCGCGGCACCTCCCTGGCCGCCGTGCCGTACACCTTCGACCTGCTCGACAGGATC GACTTCGACGCGATGTCGCTGCCGCACCTGCGTTACATCACCCAGGCCGGGGGTCGGCTGGCACCCGACCGGGTCGCCCA CTACGCCCGGCTCGGGCAGCGCGACGGCTGGGACCTCGTCGTGATGTACGGGCAGACCGAGGCCACGGCCCGCATGGCCT ACCTGCCGCCACACCTGGCCGCGACATACCCGCACGCCATCGGTGTGCCGATCCCGGGCGGGTCGTTCCGGCTCGCCCCG GTGACCGCCGGCGCCGGCAGCCCCGCAGGCGCTGGGAGTCCCGGGGACGTCGGCGAGCTTGTGTACTCCGGCCCCAACGT CATGATGGGCTACGCGCACACCGTCGCGGACCTCGCCCTCGGCAGGATGCTCGACGAGCTCCACACCGGAGATTTGGCAC GGTGCACCGACGGCGGGCTCTACGAGGTCGTCGGCAGGCAGGCCAGGTTCGCCAAGCTCTTCGGGCTCCGGATCGATCTC CAGCGTGTGGAGGACGTGCTCGCGGGCGAAGGACTCAGCGCCTGCTGCGTGACCGACGACGACGCACTCCATGTGGTCGT GGAGGGCACCGGTGAGACGGCTCCCGTCCGCCGGCTGGTCGCCCGGGCCTGCCGGCTGCCGGAGAGCGCGGTCCACGTGC ACCGTCGGGACGCGCTGCCACGCCTGACCACCGGGAAGGTCGACCTGGTCGCGGCTCGGGAGGTGGCCCACGAGGCGCTC GGGGCCGCCCCGCGCACGACCATGCCGTCCGGGCGGGGTGCGCCACTGGACGGCACAGCCGCGCTGCGCCGGCTGTTCGC GGACTCGCTCGGCCGGGACGACGTCACCGACGACAGCACCTTCGTGAGCCTGGGCGGGGACTCGCTGTCCTACGTGGACC TGTCGCTGCGCCTGCAGGAGCACCTCGGACGGCTGCCCGCCGACTGGCACACCACGCCCCTGCGGGACCTGGAGCCGGCC GCGTGGCCGAGGCGCCGGGCAGGTGGCTCGATTGAGACCAGTGTGCTGCTCCGCGCCATCGCGATCGTGTTGGTCGTCGG GACGCACGCCAACACCTTCGACGCCGTCGGTGGCATCCCCGGCGGCGCGCACCTGCTGATCGCCGTCGCCGGCTACAACT TCGTCCGTTTCCACCTGACGCCGGCGCCGCGGTCACAACGCGTGCACGGACTGCTGCGCAGCATCGCGCACCTGGTGGTG CCCAGCGTGCTGTTCATCGCCACGCTCGTGCTCCTGATGGACGAGCACGGACTCGCCAACATCGTGCTCCTCAACAGCGT GTTAGGGCCGGCGCAGGCCGGCCCGCCGTGGGAGTTCTGGTTCATCGAGGCGGTGGTCCAGATCCTGCTGGTCCTCACCG TCCTGCTGGCGGTTCCGGCGGTCGACCGGCTGCAGCGGCGTTTCCCGTTCGGGTCCGCCCTCGGCGTTCTCGCGGGCGCG TTGCTGTTCCGGTTCGACGTGGTGGAGCTGCCGGCGGGGCCACGCGACACGCAGACGTCGCTGGCCGTGCTCTGGCTGTT CGCGCTCGGCTGGGCCGCCGCCGCGGCGGGCACGGTGTGGCACCGCCTCGGCGTGACGGCGCTGGCACTGCTCACCGTCC CCGGCTACTTCGCCAACGCGCGCCGCGAGGACATCATTCTCGGCGGTCTGGTCCTCCTGATCTGGACCACAGACCTGCGC TGCCCGCGGCTGCCGCGGCGTCTGGCCGGCGTGCTGGCCAGCAGCTCGCTCGCCATCTACCTGACGCACTGGCAGGTGTT TCCCGCCCTGCAGGACGACCATCCGGTGCTGGCACTGCTGGCCTCCCTCGCGGTCGGCGTCGCGGCCTGGAGGGCATGGT CCCGGGCCACGACGCTGCTCCGCCGGCTCCCGGTGGGCGCCCTGGCGTTCCGTGCCGCGCGCCGCCCGCCCCGTGCCGCG GATGGCGGTACTCCGGCTGCCGTTTCGGGCCCAGCGCCCCGCCGCGCCCCGTTCGCGCCTGATGTGCCCATAGTCACAAT CTCTGGCTCCGAGGTAAGGATGGGCTAA
Upstream 100 bases:
>100_bases TAACCGCGTCCGTTCGGCACCGCCACCAATGCCCTGACCAGGCCTTATGTCACACAGCGGAGGTCTTAGGAAAACCTTGC CTAATTTGTAGCTTGGATGG
Downstream 100 bases:
>100_bases CTTTCATCACGCTGCTGCTTTGCGCGTTTCATCCATGTGTATGCGCAGGTAGAAGGGGGTGGCGACGGCTGCGCCGCGAC GAGTTGGCGCCGCTGGACGC
Product: AMP-dependent synthetase and ligase
Products: NA
Alternate protein names: Long-chain acyl-CoA synthetase [H]
Number of amino acids: Translated: 915; Mature: 914
Protein sequence:
>915_residues MASVGPPRPGSPAFLASSLERYGEQTAIITAEGELSYRKLGARVTAAAERIGGERRLVLLVAANTVDVLVMYLAALSAGH AVLLVPGDTSAPTGASTSVDALIDAYDPDVVIRPAGPATHVEQRRTGTRHVLHPELALLLSTSGSTGSPKLVRLSYTNLQ ANAESIAEYLDVRPSDRAATTLPMYYCYGLSVIHSHLLRGAGLVLTSLSVMDACFWALFRKARGTSLAAVPYTFDLLDRI DFDAMSLPHLRYITQAGGRLAPDRVAHYARLGQRDGWDLVVMYGQTEATARMAYLPPHLAATYPHAIGVPIPGGSFRLAP VTAGAGSPAGAGSPGDVGELVYSGPNVMMGYAHTVADLALGRMLDELHTGDLARCTDGGLYEVVGRQARFAKLFGLRIDL QRVEDVLAGEGLSACCVTDDDALHVVVEGTGETAPVRRLVARACRLPESAVHVHRRDALPRLTTGKVDLVAAREVAHEAL GAAPRTTMPSGRGAPLDGTAALRRLFADSLGRDDVTDDSTFVSLGGDSLSYVDLSLRLQEHLGRLPADWHTTPLRDLEPA AWPRRRAGGSIETSVLLRAIAIVLVVGTHANTFDAVGGIPGGAHLLIAVAGYNFVRFHLTPAPRSQRVHGLLRSIAHLVV PSVLFIATLVLLMDEHGLANIVLLNSVLGPAQAGPPWEFWFIEAVVQILLVLTVLLAVPAVDRLQRRFPFGSALGVLAGA LLFRFDVVELPAGPRDTQTSLAVLWLFALGWAAAAAGTVWHRLGVTALALLTVPGYFANARREDIILGGLVLLIWTTDLR CPRLPRRLAGVLASSSLAIYLTHWQVFPALQDDHPVLALLASLAVGVAAWRAWSRATTLLRRLPVGALAFRAARRPPRAA DGGTPAAVSGPAPRRAPFAPDVPIVTISGSEVRMG
Sequences:
>Translated_915_residues MASVGPPRPGSPAFLASSLERYGEQTAIITAEGELSYRKLGARVTAAAERIGGERRLVLLVAANTVDVLVMYLAALSAGH AVLLVPGDTSAPTGASTSVDALIDAYDPDVVIRPAGPATHVEQRRTGTRHVLHPELALLLSTSGSTGSPKLVRLSYTNLQ ANAESIAEYLDVRPSDRAATTLPMYYCYGLSVIHSHLLRGAGLVLTSLSVMDACFWALFRKARGTSLAAVPYTFDLLDRI DFDAMSLPHLRYITQAGGRLAPDRVAHYARLGQRDGWDLVVMYGQTEATARMAYLPPHLAATYPHAIGVPIPGGSFRLAP VTAGAGSPAGAGSPGDVGELVYSGPNVMMGYAHTVADLALGRMLDELHTGDLARCTDGGLYEVVGRQARFAKLFGLRIDL QRVEDVLAGEGLSACCVTDDDALHVVVEGTGETAPVRRLVARACRLPESAVHVHRRDALPRLTTGKVDLVAAREVAHEAL GAAPRTTMPSGRGAPLDGTAALRRLFADSLGRDDVTDDSTFVSLGGDSLSYVDLSLRLQEHLGRLPADWHTTPLRDLEPA AWPRRRAGGSIETSVLLRAIAIVLVVGTHANTFDAVGGIPGGAHLLIAVAGYNFVRFHLTPAPRSQRVHGLLRSIAHLVV PSVLFIATLVLLMDEHGLANIVLLNSVLGPAQAGPPWEFWFIEAVVQILLVLTVLLAVPAVDRLQRRFPFGSALGVLAGA LLFRFDVVELPAGPRDTQTSLAVLWLFALGWAAAAAGTVWHRLGVTALALLTVPGYFANARREDIILGGLVLLIWTTDLR CPRLPRRLAGVLASSSLAIYLTHWQVFPALQDDHPVLALLASLAVGVAAWRAWSRATTLLRRLPVGALAFRAARRPPRAA DGGTPAAVSGPAPRRAPFAPDVPIVTISGSEVRMG >Mature_914_residues ASVGPPRPGSPAFLASSLERYGEQTAIITAEGELSYRKLGARVTAAAERIGGERRLVLLVAANTVDVLVMYLAALSAGHA VLLVPGDTSAPTGASTSVDALIDAYDPDVVIRPAGPATHVEQRRTGTRHVLHPELALLLSTSGSTGSPKLVRLSYTNLQA NAESIAEYLDVRPSDRAATTLPMYYCYGLSVIHSHLLRGAGLVLTSLSVMDACFWALFRKARGTSLAAVPYTFDLLDRID FDAMSLPHLRYITQAGGRLAPDRVAHYARLGQRDGWDLVVMYGQTEATARMAYLPPHLAATYPHAIGVPIPGGSFRLAPV TAGAGSPAGAGSPGDVGELVYSGPNVMMGYAHTVADLALGRMLDELHTGDLARCTDGGLYEVVGRQARFAKLFGLRIDLQ RVEDVLAGEGLSACCVTDDDALHVVVEGTGETAPVRRLVARACRLPESAVHVHRRDALPRLTTGKVDLVAAREVAHEALG AAPRTTMPSGRGAPLDGTAALRRLFADSLGRDDVTDDSTFVSLGGDSLSYVDLSLRLQEHLGRLPADWHTTPLRDLEPAA WPRRRAGGSIETSVLLRAIAIVLVVGTHANTFDAVGGIPGGAHLLIAVAGYNFVRFHLTPAPRSQRVHGLLRSIAHLVVP SVLFIATLVLLMDEHGLANIVLLNSVLGPAQAGPPWEFWFIEAVVQILLVLTVLLAVPAVDRLQRRFPFGSALGVLAGAL LFRFDVVELPAGPRDTQTSLAVLWLFALGWAAAAAGTVWHRLGVTALALLTVPGYFANARREDIILGGLVLLIWTTDLRC PRLPRRLAGVLASSSLAIYLTHWQVFPALQDDHPVLALLASLAVGVAAWRAWSRATTLLRRLPVGALAFRAARRPPRAAD GGTPAAVSGPAPRRAPFAPDVPIVTISGSEVRMG
Specific function: Involved in the degradation of long-chain fatty acids [H]
COG id: COG0318
COG function: function code IQ; Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI156151445, Length=398, Percent_Identity=24.8743718592965, Blast_Score=77, Evalue=1e-13, Organism=Escherichia coli, GI145693145, Length=369, Percent_Identity=29.5392953929539, Blast_Score=96, Evalue=9e-21, Organism=Escherichia coli, GI1788107, Length=392, Percent_Identity=26.530612244898, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6319699, Length=374, Percent_Identity=24.8663101604278, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI18859661, Length=279, Percent_Identity=26.1648745519713, Blast_Score=72, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020459 - InterPro: IPR020845 - InterPro: IPR000873 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: =6.2.1.3 [H]
Molecular weight: Translated: 97237; Mature: 97106
Theoretical pI: Translated: 8.46; Mature: 8.46
Prosite motif: PS50075 ACP_DOMAIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASVGPPRPGSPAFLASSLERYGEQTAIITAEGELSYRKLGARVTAAAERIGGERRLVLL CCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEE VAANTVDVLVMYLAALSAGHAVLLVPGDTSAPTGASTSVDALIDAYDPDVVIRPAGPATH EECCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCEEEECCCCCHH VEQRRTGTRHVLHPELALLLSTSGSTGSPKLVRLSYTNLQANAESIAEYLDVRPSDRAAT HHHHCCCCCCEECCCEEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCHH TLPMYYCYGLSVIHSHLLRGAGLVLTSLSVMDACFWALFRKARGTSLAAVPYTFDLLDRI HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHC DFDAMSLPHLRYITQAGGRLAPDRVAHYARLGQRDGWDLVVMYGQTEATARMAYLPPHLA CCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCHHEEEEECCCHHH ATYPHAIGVPIPGGSFRLAPVTAGAGSPAGAGSPGDVGELVYSGPNVMMGYAHTVADLAL HCCCCEECCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCCCCEEEHHHHHHHHHHH GRMLDELHTGDLARCTDGGLYEVVGRQARFAKLFGLRIDLQRVEDVLAGEGLSACCVTDD HHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHCCEEEHHHHHHHHHCCCCCEEEECCC DALHVVVEGTGETAPVRRLVARACRLPESAVHVHRRDALPRLTTGKVDLVAAREVAHEAL CEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHH GAAPRTTMPSGRGAPLDGTAALRRLFADSLGRDDVTDDSTFVSLGGDSLSYVDLSLRLQE CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEEEEHHHHHHH HLGRLPADWHTTPLRDLEPAAWPRRRAGGSIETSVLLRAIAIVLVVGTHANTFDAVGGIP HCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHEECCCCCCHHHCCCCC GGAHLLIAVAGYNFVRFHLTPAPRSQRVHGLLRSIAHLVVPSVLFIATLVLLMDEHGLAN CCCEEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE IVLLNSVLGPAQAGPPWEFWFIEAVVQILLVLTVLLAVPAVDRLQRRFPFGSALGVLAGA EEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHH LLFRFDVVELPAGPRDTQTSLAVLWLFALGWAAAAAGTVWHRLGVTALALLTVPGYFANA HHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC RREDIILGGLVLLIWTTDLRCPRLPRRLAGVLASSSLAIYLTHWQVFPALQDDHPVLALL CCCHHHHHCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCHHHHHH ASLAVGVAAWRAWSRATTLLRRLPVGALAFRAARRPPRAADGGTPAAVSGPAPRRAPFAP HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC DVPIVTISGSEVRMG CCCEEEECCCCCCCC >Mature Secondary Structure ASVGPPRPGSPAFLASSLERYGEQTAIITAEGELSYRKLGARVTAAAERIGGERRLVLL CCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEE VAANTVDVLVMYLAALSAGHAVLLVPGDTSAPTGASTSVDALIDAYDPDVVIRPAGPATH EECCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCEEEECCCCCHH VEQRRTGTRHVLHPELALLLSTSGSTGSPKLVRLSYTNLQANAESIAEYLDVRPSDRAAT HHHHCCCCCCEECCCEEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCHH TLPMYYCYGLSVIHSHLLRGAGLVLTSLSVMDACFWALFRKARGTSLAAVPYTFDLLDRI HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHC DFDAMSLPHLRYITQAGGRLAPDRVAHYARLGQRDGWDLVVMYGQTEATARMAYLPPHLA CCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCHHEEEEECCCHHH ATYPHAIGVPIPGGSFRLAPVTAGAGSPAGAGSPGDVGELVYSGPNVMMGYAHTVADLAL HCCCCEECCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCCCCEEEHHHHHHHHHHH GRMLDELHTGDLARCTDGGLYEVVGRQARFAKLFGLRIDLQRVEDVLAGEGLSACCVTDD HHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHCCEEEHHHHHHHHHCCCCCEEEECCC DALHVVVEGTGETAPVRRLVARACRLPESAVHVHRRDALPRLTTGKVDLVAAREVAHEAL CEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHH GAAPRTTMPSGRGAPLDGTAALRRLFADSLGRDDVTDDSTFVSLGGDSLSYVDLSLRLQE CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEEEEHHHHHHH HLGRLPADWHTTPLRDLEPAAWPRRRAGGSIETSVLLRAIAIVLVVGTHANTFDAVGGIP HCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHEECCCCCCHHHCCCCC GGAHLLIAVAGYNFVRFHLTPAPRSQRVHGLLRSIAHLVVPSVLFIATLVLLMDEHGLAN CCCEEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE IVLLNSVLGPAQAGPPWEFWFIEAVVQILLVLTVLLAVPAVDRLQRRFPFGSALGVLAGA EEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHH LLFRFDVVELPAGPRDTQTSLAVLWLFALGWAAAAAGTVWHRLGVTALALLTVPGYFANA HHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC RREDIILGGLVLLIWTTDLRCPRLPRRLAGVLASSSLAIYLTHWQVFPALQDDHPVLALL CCCHHHHHCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCHHHHHH ASLAVGVAAWRAWSRATTLLRRLPVGALAFRAARRPPRAADGGTPAAVSGPAPRRAPFAP HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC DVPIVTISGSEVRMG CCCEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]