| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158317055
Identifier: 158317055
GI number: 158317055
Start: 6374719
End: 6376170
Strand: Reverse
Name: 158317055
Synonym: Franean1_5299
Alternate gene names: NA
Gene position: 6376170-6374719 (Counterclockwise)
Preceding gene: 158317057
Following gene: 158317054
Centisome position: 70.99
GC content: 75.76
Gene sequence:
>1452_bases ATGGCGACGCGCTCCCGGGCGATGATCGCCGGGATGTTGGCCGGCCCGGCGGCGCTGGCGGTCGCGGGTGTCCTCGTGAA CGGCCTCAACCTGTTCATGAACCTGGTGCTCGCGCGGGTGCTCGACCCGGCCCGGTATGGCGCGGTGGTCGTCCAGGTCA GCATTTTCATGATCCTCTCGGTGGTCGGCAACGCGCTGCTCATCGCCGTCGTGCAGCGGGAGACCGCCGATGACGGCGAC AGCCGGCGTGCCCAGCGGGCCTGGATCAGGCGCCTGCGTGGTGTCTGTGGCATCGGCGTGGTCGCCGCGTCGGCCGCCGC CGTGCTGCTGTGCCGGCCGGCCGCGGCCCTGCTCTCCTACGCCCACCCGCTGGCCGTCGCCGAGGCCGTGATCGGCGCGG CGGTGTGGACGCTGCTGTGCGTCGAGCGCGGGGTGCTCCAGGCCCGGGGGGCCTATCCGCGCCTGGCGGTCAACTTCGTG GTCGAGGCGGCGCTGCGGATCGGGCTGATCGTCGCCTTCGTCGGCGCGGGCCTGGGGGTCAACGGCGCGGGGCTCGGGCT GGTGCTGGGCATCGCGCTCGGCGCCGAGCACGCCCGGCTGGGGGTCGCGAAGGTCCCGCGCCCGGCGAGGGCCGCGAAGC CCCACGCGGCGGCACCACCCTCCACCGGAGCACCGGACACGGCTGCGTCCGGGCCTCGCCCGCTGACCGCCACCGGCCCG CTGCTCATCCCCGGGCCGACACGGTCCGGCCGCAGCGGGCTGTTGGCCGACACCTGGGTCGCGCTCGGCGCGCTCGTCCC GCTCGCGCTGCTGCAGAACATGGACGTCGTGATCGTCGGCTGGCTGGACCACGACGGGGCCGGCGCCTACGCGGCGATCT CGACGGCGTGCAAGATCCCGGTGTTCATCGGCCTGGCGGTGGCGAACTTCCTGCTGCCCGAGGCGGCGCGCAGGCGGGCC GCCGGGCACGGCACGGCCCCGGTGCTGGCGGTGGCGCTCGCGTTCGTCGTCACCCCGGGGCTGCTGCTCGCCGCCCTCGG TTCGGTGGCCGCCAGGCCGCTGCTGTCGATGGTCTTCGGACCCGACCTCGCGGGCGCGGCCTCCTCACTGTCCGTGCTCG CGCTCGGCATGACCTGCCTGGCCGTGACGCTGATGTTCACCACCTACCTGCTCGGCGCGGCCCAGCGGCAGGTCGTCGCG GCCCTGACGGTGTGTGCCGTCGTCACGGCGGCGGCGCTGGGCCTCGCCGGCGGGGACCCGATGCGGACCTCGCTGGCCGG GCTCGCCTGCCATGCCATGACGGCGCTGCTCCTCGGGGCCCTGGTACACGGCCTGCACCGCGCCGACGCGCGGGCCGCCG CGGCGCCGGTCGCCGCCACCGGCCAGGCGGGTACGGTCCCTCCGGGTCAGCATCCTCCCGGCGGGGAGGCACAGCCCGTC GGCGTCTGGTGA
Upstream 100 bases:
>100_bases CCGGTGGCCCGCCTCGACCGGCGCGGAGTACCAACCAGCGCGGAGCACCGGCCGCGACAGGAACGCACGGACCCAGGAAC ACGGACCCAGGAAGAGGCAG
Downstream 100 bases:
>100_bases CACCTGACAGCGCACCGCTCGCCGCACCGCCCGCCGCGTCGCCGGCAGCCAGCGCCCACCCGTGCCGGGCGTCCGTGCCC GGCGAACGTTCCCACCAAGG
Product: polysaccharide biosynthesis protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 483; Mature: 482
Protein sequence:
>483_residues MATRSRAMIAGMLAGPAALAVAGVLVNGLNLFMNLVLARVLDPARYGAVVVQVSIFMILSVVGNALLIAVVQRETADDGD SRRAQRAWIRRLRGVCGIGVVAASAAAVLLCRPAAALLSYAHPLAVAEAVIGAAVWTLLCVERGVLQARGAYPRLAVNFV VEAALRIGLIVAFVGAGLGVNGAGLGLVLGIALGAEHARLGVAKVPRPARAAKPHAAAPPSTGAPDTAASGPRPLTATGP LLIPGPTRSGRSGLLADTWVALGALVPLALLQNMDVVIVGWLDHDGAGAYAAISTACKIPVFIGLAVANFLLPEAARRRA AGHGTAPVLAVALAFVVTPGLLLAALGSVAARPLLSMVFGPDLAGAASSLSVLALGMTCLAVTLMFTTYLLGAAQRQVVA ALTVCAVVTAAALGLAGGDPMRTSLAGLACHAMTALLLGALVHGLHRADARAAAAPVAATGQAGTVPPGQHPPGGEAQPV GVW
Sequences:
>Translated_483_residues MATRSRAMIAGMLAGPAALAVAGVLVNGLNLFMNLVLARVLDPARYGAVVVQVSIFMILSVVGNALLIAVVQRETADDGD SRRAQRAWIRRLRGVCGIGVVAASAAAVLLCRPAAALLSYAHPLAVAEAVIGAAVWTLLCVERGVLQARGAYPRLAVNFV VEAALRIGLIVAFVGAGLGVNGAGLGLVLGIALGAEHARLGVAKVPRPARAAKPHAAAPPSTGAPDTAASGPRPLTATGP LLIPGPTRSGRSGLLADTWVALGALVPLALLQNMDVVIVGWLDHDGAGAYAAISTACKIPVFIGLAVANFLLPEAARRRA AGHGTAPVLAVALAFVVTPGLLLAALGSVAARPLLSMVFGPDLAGAASSLSVLALGMTCLAVTLMFTTYLLGAAQRQVVA ALTVCAVVTAAALGLAGGDPMRTSLAGLACHAMTALLLGALVHGLHRADARAAAAPVAATGQAGTVPPGQHPPGGEAQPV GVW >Mature_482_residues ATRSRAMIAGMLAGPAALAVAGVLVNGLNLFMNLVLARVLDPARYGAVVVQVSIFMILSVVGNALLIAVVQRETADDGDS RRAQRAWIRRLRGVCGIGVVAASAAAVLLCRPAAALLSYAHPLAVAEAVIGAAVWTLLCVERGVLQARGAYPRLAVNFVV EAALRIGLIVAFVGAGLGVNGAGLGLVLGIALGAEHARLGVAKVPRPARAAKPHAAAPPSTGAPDTAASGPRPLTATGPL LIPGPTRSGRSGLLADTWVALGALVPLALLQNMDVVIVGWLDHDGAGAYAAISTACKIPVFIGLAVANFLLPEAARRRAA GHGTAPVLAVALAFVVTPGLLLAALGSVAARPLLSMVFGPDLAGAASSLSVLALGMTCLAVTLMFTTYLLGAAQRQVVAA LTVCAVVTAAALGLAGGDPMRTSLAGLACHAMTALLLGALVHGLHRADARAAAAPVAATGQAGTVPPGQHPPGGEAQPVG VW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48187; Mature: 48055
Theoretical pI: Translated: 10.76; Mature: 10.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATRSRAMIAGMLAGPAALAVAGVLVNGLNLFMNLVLARVLDPARYGAVVVQVSIFMILS CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH VVGNALLIAVVQRETADDGDSRRAQRAWIRRLRGVCGIGVVAASAAAVLLCRPAAALLSY HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AHPLAVAEAVIGAAVWTLLCVERGVLQARGAYPRLAVNFVVEAALRIGLIVAFVGAGLGV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC NGAGLGLVLGIALGAEHARLGVAKVPRPARAAKPHAAAPPSTGAPDTAASGPRPLTATGP CCCHHHHHHHHHHCCHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC LLIPGPTRSGRSGLLADTWVALGALVPLALLQNMDVVIVGWLDHDGAGAYAAISTACKIP EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHH VFIGLAVANFLLPEAARRRAAGHGTAPVLAVALAFVVTPGLLLAALGSVAARPLLSMVFG HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC PDLAGAASSLSVLALGMTCLAVTLMFTTYLLGAAQRQVVAALTVCAVVTAAALGLAGGDP CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH MRTSLAGLACHAMTALLLGALVHGLHRADARAAAAPVAATGQAGTVPPGQHPPGGEAQPV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC GVW CCC >Mature Secondary Structure ATRSRAMIAGMLAGPAALAVAGVLVNGLNLFMNLVLARVLDPARYGAVVVQVSIFMILS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH VVGNALLIAVVQRETADDGDSRRAQRAWIRRLRGVCGIGVVAASAAAVLLCRPAAALLSY HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AHPLAVAEAVIGAAVWTLLCVERGVLQARGAYPRLAVNFVVEAALRIGLIVAFVGAGLGV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC NGAGLGLVLGIALGAEHARLGVAKVPRPARAAKPHAAAPPSTGAPDTAASGPRPLTATGP CCCHHHHHHHHHHCCHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC LLIPGPTRSGRSGLLADTWVALGALVPLALLQNMDVVIVGWLDHDGAGAYAAISTACKIP EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHH VFIGLAVANFLLPEAARRRAAGHGTAPVLAVALAFVVTPGLLLAALGSVAARPLLSMVFG HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC PDLAGAASSLSVLALGMTCLAVTLMFTTYLLGAAQRQVVAALTVCAVVTAAALGLAGGDP CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH MRTSLAGLACHAMTALLLGALVHGLHRADARAAAAPVAATGQAGTVPPGQHPPGGEAQPV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC GVW CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA