| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is fabG [H]
Identifier: 158317004
GI number: 158317004
Start: 6309619
End: 6310449
Strand: Direct
Name: fabG [H]
Synonym: Franean1_5248
Alternate gene names: 158317004
Gene position: 6309619-6310449 (Clockwise)
Preceding gene: 158317000
Following gene: 158317006
Centisome position: 70.25
GC content: 74.37
Gene sequence:
>831_bases ATGGCGAGGATCAAGGGATCAGTCGTCCTGGTGACCGGGGCGAACCGGGGGCTGGGGCGGGCGTTTGTCGAGGAGCTGCT GGCCCGGGGTGCCGCGAAGGTCTACGCGGCCGCGCGCGACCCGCAGTCGGTCCAGACCCCGGGCGCCGTACCGATCCGGC TGGATGTCAACGACCCGGCCCAGGTGGCCGCGGCGGCCGAGGCGACCGGCGACGTCGACATCCTGATCAACAACGCCGGC AGCTCGACCGGCGCGTCGGTGCTCACCGGGGACGTCGACGACATCCGCCTGGAGCTGGAGACCCACTTCTTCGGGCCGCT GCGCACGGTCCGCGCTTTCGCCCCGCAGCTCGCGCGGCACCGCGCCGGCGCCGGCGCGGCGGGTGAGGGCAACGCGAACG GGAACGGCGCCGGCGGTGCGGGAGCCACGGGGCGCGCGGGCGCGTCCGGTGGGGCGGTGCTCAACGTCCTGTCGGCCCTG TCGTGGTTGGCGGCGCCGACGAGCGGAGGCTACTGCGCGGCGAAGAGCGCCGCCTGGTCGCTGACGAACTCCCAGCGGCT GGAGCTGGCCGACCAGGGCGTCGCCGTGACGGCGCTGCACGTCGGCTACATGGACACCGACATGACCCGCGCCATCCAGG CGCCGAAGTCGGACCCGGCCACCATCGCGGCGCTCGCGCTGGACGGCGTCGAGGCCGGAGCCGCCGAGGTCCTCGCGGAC GACACGAGCATTCACATCCGGGCGGCGCTGTCGGGTGGGCTCACCGACCTCTATCCGGCGCTCGCCGAGCTCTACTCCTC GCGCGAGCCCGTGGCCACGCTGACGGGCTGA
Upstream 100 bases:
>100_bases CGGTGATCCGCAGGGACGGCCGGACATCGGCGACGTCCCGGCCCAGGCGGGGCATGGCCCGGCCGGGGTATGGCGGGCGA CGAGGGACGGAGCGCGGGCG
Downstream 100 bases:
>100_bases CCAGCCCCGTCCACCGCATCGTCCACCGGCGGACGGCCCTCCGGCACACTCACGGCCGGCTGGGCCGCCTCCGGGCCGGC ATCGGCGTCAGTGCCGGCGC
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]
Number of amino acids: Translated: 276; Mature: 275
Protein sequence:
>276_residues MARIKGSVVLVTGANRGLGRAFVEELLARGAAKVYAAARDPQSVQTPGAVPIRLDVNDPAQVAAAAEATGDVDILINNAG SSTGASVLTGDVDDIRLELETHFFGPLRTVRAFAPQLARHRAGAGAAGEGNANGNGAGGAGATGRAGASGGAVLNVLSAL SWLAAPTSGGYCAAKSAAWSLTNSQRLELADQGVAVTALHVGYMDTDMTRAIQAPKSDPATIAALALDGVEAGAAEVLAD DTSIHIRAALSGGLTDLYPALAELYSSREPVATLTG
Sequences:
>Translated_276_residues MARIKGSVVLVTGANRGLGRAFVEELLARGAAKVYAAARDPQSVQTPGAVPIRLDVNDPAQVAAAAEATGDVDILINNAG SSTGASVLTGDVDDIRLELETHFFGPLRTVRAFAPQLARHRAGAGAAGEGNANGNGAGGAGATGRAGASGGAVLNVLSAL SWLAAPTSGGYCAAKSAAWSLTNSQRLELADQGVAVTALHVGYMDTDMTRAIQAPKSDPATIAALALDGVEAGAAEVLAD DTSIHIRAALSGGLTDLYPALAELYSSREPVATLTG >Mature_275_residues ARIKGSVVLVTGANRGLGRAFVEELLARGAAKVYAAARDPQSVQTPGAVPIRLDVNDPAQVAAAAEATGDVDILINNAGS STGASVLTGDVDDIRLELETHFFGPLRTVRAFAPQLARHRAGAGAAGEGNANGNGAGGAGATGRAGASGGAVLNVLSALS WLAAPTSGGYCAAKSAAWSLTNSQRLELADQGVAVTALHVGYMDTDMTRAIQAPKSDPATIAALALDGVEAGAAEVLADD TSIHIRAALSGGLTDLYPALAELYSSREPVATLTG
Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI20149619, Length=226, Percent_Identity=26.5486725663717, Blast_Score=74, Evalue=2e-13, Organism=Escherichia coli, GI1787335, Length=219, Percent_Identity=26.9406392694064, Blast_Score=71, Evalue=7e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011284 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.100 [H]
Molecular weight: Translated: 27609; Mature: 27478
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARIKGSVVLVTGANRGLGRAFVEELLARGAAKVYAAARDPQSVQTPGAVPIRLDVNDPA CCEECCCEEEEECCCCCHHHHHHHHHHHCCHHEEEEECCCCCCCCCCCCEEEEEECCCHH QVAAAAEATGDVDILINNAGSSTGASVLTGDVDDIRLELETHFFGPLRTVRAFAPQLARH HHHHHHCCCCCEEEEEECCCCCCCCEEEECCCCCEEEEEEHHCCCHHHHHHHHHHHHHHH RAGAGAAGEGNANGNGAGGAGATGRAGASGGAVLNVLSALSWLAAPTSGGYCAAKSAAWS HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCEEE LTNSQRLELADQGVAVTALHVGYMDTDMTRAIQAPKSDPATIAALALDGVEAGAAEVLAD CCCCCEEEHHCCCEEEEEEEECCCCCHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHEEC DTSIHIRAALSGGLTDLYPALAELYSSREPVATLTG CCCEEEEEEECCCHHHHHHHHHHHHCCCCCEEECCC >Mature Secondary Structure ARIKGSVVLVTGANRGLGRAFVEELLARGAAKVYAAARDPQSVQTPGAVPIRLDVNDPA CEECCCEEEEECCCCCHHHHHHHHHHHCCHHEEEEECCCCCCCCCCCCEEEEEECCCHH QVAAAAEATGDVDILINNAGSSTGASVLTGDVDDIRLELETHFFGPLRTVRAFAPQLARH HHHHHHCCCCCEEEEEECCCCCCCCEEEECCCCCEEEEEEHHCCCHHHHHHHHHHHHHHH RAGAGAAGEGNANGNGAGGAGATGRAGASGGAVLNVLSALSWLAAPTSGGYCAAKSAAWS HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCEEE LTNSQRLELADQGVAVTALHVGYMDTDMTRAIQAPKSDPATIAALALDGVEAGAAEVLAD CCCCCEEEHHCCCEEEEEEEECCCCCHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHEEC DTSIHIRAALSGGLTDLYPALAELYSSREPVATLTG CCCEEEEEEECCCHHHHHHHHHHHHCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1556094; 8905232; 9278503; 1314802 [H]