| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158316971
Identifier: 158316971
GI number: 158316971
Start: 6261213
End: 6261950
Strand: Direct
Name: 158316971
Synonym: Franean1_5215
Alternate gene names: NA
Gene position: 6261213-6261950 (Clockwise)
Preceding gene: 158316964
Following gene: 158316972
Centisome position: 69.71
GC content: 68.43
Gene sequence:
>738_bases ATGACTGCCACCGCGATCACAACCGCCAGGCCCCCGGCGAGACCGCGCAGACAGCGGCGGGTCGCCCGTCAGCTTCTGCT AACCGCACACGTCCTGGTGAGCGTCGGGTGGAACGGCGTCGCACTGGGCCAGCTCGCGCTCGCCATCACGGCGTCTCTCG ACAGCGACATCCGGCATCCGGCCTATGAGCTCATGCACGTGTTCGATCGAGCCCTCAACATTCCGCTGGCGCTACTCACC CTCGCGACGGGGATCCTGATCTCGCTGCGCACCCGATGGGGTCTCCTGCACCACAAGTGGGTCGTGACCAAGCTGGCGAT CACGGTCGTCGCGGTCATCTTCGCGGCCGCCTTCATGCGCACCATGATCGTTCGAGCCGGCCATGCCACAGCGGACGGAA ACGTCCACTACAGCGGACCCACAGTCGCGATCATCGCGGGTGCCTGCCTGATGAACGCGATGTTCATTACCGCCACGTTC CTGTCCACGCTCAAGCCCTGGGGGCGCACGCAACGGGGCCTGCGCGCCGGTCGGCGCCCTGCCGCGCGCGCTCCGGTGAG CGGCGTGAACGGGACGTCCACGCCGTCCTCCACCAGGTCTTTCTTCTCGCCTGCCCCGACCGGTTCAACGGTGACGGACA CGCCGCTCCCCGGGAATTCCGGTCCGCCGGCCGGAAACGCGGGCCCGGTCCCGGAAACCACGCAGGACCCCGCCGCCCCC GAGAGCGTCTCGAGATAG
Upstream 100 bases:
>100_bases GTGATTTCCGTTCGTCCGGGGTAGCCGGCGAGTTACGGCGGCGCCACCGCTGCGCTATAGCACTTCTGGCCTGATCCGTC CGACCTCCGGAGTCGCCGGC
Downstream 100 bases:
>100_bases GAGGCCGCAGACTCCGGCGCCGCGCGGGAAAAACTCTCAGCACCGCCGCCGGACGGGATGCCGGCAGAGTGCCGCACGGA GTTCCGGCGCCCAGGTTGTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 245; Mature: 244
Protein sequence:
>245_residues MTATAITTARPPARPRRQRRVARQLLLTAHVLVSVGWNGVALGQLALAITASLDSDIRHPAYELMHVFDRALNIPLALLT LATGILISLRTRWGLLHHKWVVTKLAITVVAVIFAAAFMRTMIVRAGHATADGNVHYSGPTVAIIAGACLMNAMFITATF LSTLKPWGRTQRGLRAGRRPAARAPVSGVNGTSTPSSTRSFFSPAPTGSTVTDTPLPGNSGPPAGNAGPVPETTQDPAAP ESVSR
Sequences:
>Translated_245_residues MTATAITTARPPARPRRQRRVARQLLLTAHVLVSVGWNGVALGQLALAITASLDSDIRHPAYELMHVFDRALNIPLALLT LATGILISLRTRWGLLHHKWVVTKLAITVVAVIFAAAFMRTMIVRAGHATADGNVHYSGPTVAIIAGACLMNAMFITATF LSTLKPWGRTQRGLRAGRRPAARAPVSGVNGTSTPSSTRSFFSPAPTGSTVTDTPLPGNSGPPAGNAGPVPETTQDPAAP ESVSR >Mature_244_residues TATAITTARPPARPRRQRRVARQLLLTAHVLVSVGWNGVALGQLALAITASLDSDIRHPAYELMHVFDRALNIPLALLTL ATGILISLRTRWGLLHHKWVVTKLAITVVAVIFAAAFMRTMIVRAGHATADGNVHYSGPTVAIIAGACLMNAMFITATFL STLKPWGRTQRGLRAGRRPAARAPVSGVNGTSTPSSTRSFFSPAPTGSTVTDTPLPGNSGPPAGNAGPVPETTQDPAAPE SVSR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25817; Mature: 25686
Theoretical pI: Translated: 12.30; Mature: 12.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTATAITTARPPARPRRQRRVARQLLLTAHVLVSVGWNGVALGQLALAITASLDSDIRHP CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHH AYELMHVFDRALNIPLALLTLATGILISLRTRWGLLHHKWVVTKLAITVVAVIFAAAFMR HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TMIVRAGHATADGNVHYSGPTVAIIAGACLMNAMFITATFLSTLKPWGRTQRGLRAGRRP HHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC AARAPVSGVNGTSTPSSTRSFFSPAPTGSTVTDTPLPGNSGPPAGNAGPVPETTQDPAAP CCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ESVSR CCCCC >Mature Secondary Structure TATAITTARPPARPRRQRRVARQLLLTAHVLVSVGWNGVALGQLALAITASLDSDIRHP CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHH AYELMHVFDRALNIPLALLTLATGILISLRTRWGLLHHKWVVTKLAITVVAVIFAAAFMR HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TMIVRAGHATADGNVHYSGPTVAIIAGACLMNAMFITATFLSTLKPWGRTQRGLRAGRRP HHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC AARAPVSGVNGTSTPSSTRSFFSPAPTGSTVTDTPLPGNSGPPAGNAGPVPETTQDPAAP CCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ESVSR CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA