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The map label for this gene is 158316955

Identifier: 158316955

GI number: 158316955

Start: 6239938

End: 6240939

Strand: Reverse

Name: 158316955

Synonym: Franean1_5199

Alternate gene names: NA

Gene position: 6240939-6239938 (Counterclockwise)

Preceding gene: 158316956

Following gene: 158316954

Centisome position: 69.48

GC content: 76.05

Gene sequence:

>1002_bases
GTGACCGACAGGCCCGACGCGGGCGGCCCCGGTGCGCTGGCCGAGGCGTTCGAGGCGGAGCGCGGGTACCTGCGCGCCGT
GGCCTACCGCATCCTCGGCTCGGTCACCGACGCCGAGGACATCGTCCAGGACGCCTGGCTGCGCCTCGCCCGGACCGACC
CGGCCGCCATCGAGGACCTGCGCGGATGGCTGACCGTGGTCGTCGGCCGGCTCTGCCTCGACCATCTCCGCTCGGCTCGG
GTCCGGCGGGAGACCTACGTCGGGCCGTGGCTGCCCGAGCCGCTGGTCGACCCGTCCGGTCTGGGCGGGTCGGGTGGGTC
GGCCGGCGGGGGCGGCGCGACCGGCCCGGTCGGCGAGGTCACGGCCGTGGCCGCCGAGCGGGCCGACCCGGCGGACCGGG
TCACCCTCGCCGAGTCGGTCAGCATGGCCATGCTGGTCGTCCTGGAGTCACTGAGCCCGGCCGAGCGGACCGCGCTGATC
CTGCACGACGTCTTCGGCTACGGCTTCGAGGAGGTCGCCGAGGTGACCGGCCGCAGCCCGGCCGCCAGCCGGCAGCTCGC
CAGCCGCGCCCGGCGGCACGTGCGGGAGCGGGCCGTCCGCTTCGATCCCGACCCGGCCCAGCGGCGCGGTGTCGCCGATG
CGTTCCTGGCGGCCGCCGCCGGCGGTGACCTGGCCGCGCTGCTGCGCGTCCTCGACCCGGACGTCGTGCTGCGCTCGGAC
GGCGGCGGTGTGGTGCGCGCCGCGCTGCGCCCGATCGACGGGGCGGACAAGGTGGCGCGGTTCCTACACGGCCTGATCGA
GAAGGGCCGCCGGCAGTACGGGGCCGCGGTGCGCTTCGTCCCGGTCGAGGTCAACGGGGGAGCGGGTATCGCCACGTACA
CCGGTCCGCGGCTGGTGAACGTCGTCGCGCTCACGGTGTGGCGCGGGCTGGTCACGGAGATCGACGTCGTGGTCAACCCG
GCGAAGCTGCGCCATCTCACGCAACCGCCACACGGCGGCTGA

Upstream 100 bases:

>100_bases
TGGGAGCTGAGCCTGGTCGGCACCGGCGGCGAGCTGGCCGTCGACGTGGTGCTCGTCCCGCCGGCCGGCTGATCGTCACC
GCCCGCGACGGGGGTGCGGT

Downstream 100 bases:

>100_bases
GTACGTCGCCACCCGCCCGGACGGGCGCCGCGACCAGCGGAAACCATGAGTGCCACGGGTGGCGGCACGATGCGGCAGGA
TGGAAACGTGGCCATCTACG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma Factor SigJ; RNA Polymerase ECF-Subfamily Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF-Sigma Factor; Sigma-; RNA Polymerase ECF-Type Sigma Factor; Sigma Factor Sigma; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase; ECF-Family RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase; RNA Polymerase Sigma Factor Sigma-70 Family Protein; Sigma-70 Factor; RNA Polymerase Sigma Factor Protein; AlteRNAtive RNA Polymerase Sigma Factor; AlteRNAtive RNA Polymerase Sigma Factor SigJ; RNA Polymerase Sigma Subunit ECF Family; RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-70 Factor Family; RNA Polymerase Sigma-24 Factor; ECF-Type Sigma Factor; RNA Polymerase Sigma-70 ECF Type; Sigma-70 Region 2 Domain-Containing Protein; RNA Polymerase Sigma-70 Factor Protein; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma Subunit; ECF Sigma Factor; RNA Polymerase Sigma-70-Like Factor; RNA Polymerase ECF-Type Sigma Factor SigJ; Sigma-70 Family RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MTDRPDAGGPGALAEAFEAERGYLRAVAYRILGSVTDAEDIVQDAWLRLARTDPAAIEDLRGWLTVVVGRLCLDHLRSAR
VRRETYVGPWLPEPLVDPSGLGGSGGSAGGGGATGPVGEVTAVAAERADPADRVTLAESVSMAMLVVLESLSPAERTALI
LHDVFGYGFEEVAEVTGRSPAASRQLASRARRHVRERAVRFDPDPAQRRGVADAFLAAAAGGDLAALLRVLDPDVVLRSD
GGGVVRAALRPIDGADKVARFLHGLIEKGRRQYGAAVRFVPVEVNGGAGIATYTGPRLVNVVALTVWRGLVTEIDVVVNP
AKLRHLTQPPHGG

Sequences:

>Translated_333_residues
MTDRPDAGGPGALAEAFEAERGYLRAVAYRILGSVTDAEDIVQDAWLRLARTDPAAIEDLRGWLTVVVGRLCLDHLRSAR
VRRETYVGPWLPEPLVDPSGLGGSGGSAGGGGATGPVGEVTAVAAERADPADRVTLAESVSMAMLVVLESLSPAERTALI
LHDVFGYGFEEVAEVTGRSPAASRQLASRARRHVRERAVRFDPDPAQRRGVADAFLAAAAGGDLAALLRVLDPDVVLRSD
GGGVVRAALRPIDGADKVARFLHGLIEKGRRQYGAAVRFVPVEVNGGAGIATYTGPRLVNVVALTVWRGLVTEIDVVVNP
AKLRHLTQPPHGG
>Mature_332_residues
TDRPDAGGPGALAEAFEAERGYLRAVAYRILGSVTDAEDIVQDAWLRLARTDPAAIEDLRGWLTVVVGRLCLDHLRSARV
RRETYVGPWLPEPLVDPSGLGGSGGSAGGGGATGPVGEVTAVAAERADPADRVTLAESVSMAMLVVLESLSPAERTALIL
HDVFGYGFEEVAEVTGRSPAASRQLASRARRHVRERAVRFDPDPAQRRGVADAFLAAAAGGDLAALLRVLDPDVVLRSDG
GGVVRAALRPIDGADKVARFLHGLIEKGRRQYGAAVRFVPVEVNGGAGIATYTGPRLVNVVALTVWRGLVTEIDVVVNPA
KLRHLTQPPHGG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35084; Mature: 34953

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDRPDAGGPGALAEAFEAERGYLRAVAYRILGSVTDAEDIVQDAWLRLARTDPAAIEDL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH
RGWLTVVVGRLCLDHLRSARVRRETYVGPWLPEPLVDPSGLGGSGGSAGGGGATGPVGEV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
TAVAAERADPADRVTLAESVSMAMLVVLESLSPAERTALILHDVFGYGFEEVAEVTGRSP
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCCC
AASRQLASRARRHVRERAVRFDPDPAQRRGVADAFLAAAAGGDLAALLRVLDPDVVLRSD
HHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCEEEECC
GGGVVRAALRPIDGADKVARFLHGLIEKGRRQYGAAVRFVPVEVNGGAGIATYTGPRLVN
CCCEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCEEECCCHHHHH
VVALTVWRGLVTEIDVVVNPAKLRHLTQPPHGG
HHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCC
>Mature Secondary Structure 
TDRPDAGGPGALAEAFEAERGYLRAVAYRILGSVTDAEDIVQDAWLRLARTDPAAIEDL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH
RGWLTVVVGRLCLDHLRSARVRRETYVGPWLPEPLVDPSGLGGSGGSAGGGGATGPVGEV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
TAVAAERADPADRVTLAESVSMAMLVVLESLSPAERTALILHDVFGYGFEEVAEVTGRSP
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCCC
AASRQLASRARRHVRERAVRFDPDPAQRRGVADAFLAAAAGGDLAALLRVLDPDVVLRSD
HHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCEEEECC
GGGVVRAALRPIDGADKVARFLHGLIEKGRRQYGAAVRFVPVEVNGGAGIATYTGPRLVN
CCCEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCEEECCCHHHHH
VVALTVWRGLVTEIDVVVNPAKLRHLTQPPHGG
HHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA