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The map label for this gene is xylH [H]

Identifier: 158316941

GI number: 158316941

Start: 6225255

End: 6226568

Strand: Reverse

Name: xylH [H]

Synonym: Franean1_5185

Alternate gene names: 158316941

Gene position: 6226568-6225255 (Counterclockwise)

Preceding gene: 158316942

Following gene: 158316940

Centisome position: 69.32

GC content: 72.98

Gene sequence:

>1314_bases
ATGAGCGAGTTCGCGCCCGGTGCCGCGGAGCCCACAGCCAGCCCCGCCCAACCGAACCCCGCCGCGAGGCCGGTCGGCGC
AGTCGCGACCGGTCGGGGCGACGCGGCGGTCGACCCGCGACTGCTCTTCGCCGGCCCGGGCCTGCGCGGCCTGGCGGGCT
CGGCGCTGCGCCACGTGCGCGCGGGCGAGCTCGGATCGCTACCGGTCATCGTCGGGCTCGTCGTGATCTGGACGATCTTC
CAGTTCCAGAACTCGAACTTCCTCACCTCCTACAACCTCACGAACCTCGCACTGCAGGTCGCCGCGACCGGGACGATCGC
CACCGGCGTCTTCCTCGTCCTGCTGCTCGGCGAGATCGACCTGTCGGTCGGCTGGGTCAGTGGGCTGTGCGCGTCGGTCA
TGGCGGTGCTGTCGGTGCGCCACGGGTGGGCGCCGGTTCTGGCGATCGTGGCCGCGCTGGTCGTCGGCGTCGCCGTGGGT
GCCCTGCAGGGCAGCCTGTTCGCCGTGTTCGGCGTCCCGTCCTTCGTCGTGACGCTGGCGGGCTTCATCGCCTGGCAGGG
CGTGCAGCTCAAGGTGCTCGGCCGGGACGGATCGCTCAACCTGCCGGACAGCGAGATCACGAAGCTGACGTCCACCTTCT
TCACCGACGCCACCGGATGGGTGATCGCCGGGATCGCCGTGGCCGGGTATGCCGGTGCCCAGCTCGCCGAGGTCCGCGGC
CGCCGGCGGGCCGGGCTGCGGCCCCGCCCGATCGCGGAGGTCGCGGTGCGGGTGGTCGTCGTGGGCGGCGCGCTCATCGC
GGCGGTGGCGATCCTCAACGACGACCGCGGGCTGCCGCTGGCGCTGTTGATCTTCGGCTGCCTGGTGCTGCTGGTGGACC
TGGTTTCGCGGCGCACCAGCTACGGCCGCCACCTGTACGCCGTCGGCGGCAACGTCGAAGCGGCGCGCCGGGCCGGCATC
AACGTGCGCGCGCTGCGCGTCTCGGCGTTCGCCGCCGCGTCCTGCCTGGCCGGCGTTGGCGGTGTCCTCGCCGCCGCGCG
GCTGACGAGCGTCACACAGGCCTCCGGCGGCAGCGACACGCTGCTCAACGCGATCGCCGCGGCGGTGATCGGCGGGACGA
GCCTGTTCGGCGGACGCGGCCGGGCCTGGTCGGCGCTGCTCGGCATCCTGGTGATCGGTTCGATCGCCAACGGGATGGAC
CTGCTTGGTCTCGACCAGTCGGTCAAGTTCATCATCACCGGGTCGGTCCTGCTCGCCGCGGTGCTTCTGGACGCGGCCGC
GCGCCGGGGGAGGCAGGCGAGTGGCCGAGGGTGA

Upstream 100 bases:

>100_bases
CCTCACGGGAGGACATCGTGGCCGCGATCACCGGCGCGGACACGGCCCCCGCGACAGGTGCGACGGCCCCCGCGACGGGT
GCGGAGGAGGTGCGTCCGCG

Downstream 100 bases:

>100_bases
GACGCCCGAGCCTCCAATAACGCTGACTGTGCGTAATCGCGAGTGATCCGATCAGGGGTGCCCATAACGGCCGTTCACAT
GTGACGGCGACGTGACAACA

Product: inner-membrane translocator

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 436

Protein sequence:

>437_residues
MSEFAPGAAEPTASPAQPNPAARPVGAVATGRGDAAVDPRLLFAGPGLRGLAGSALRHVRAGELGSLPVIVGLVVIWTIF
QFQNSNFLTSYNLTNLALQVAATGTIATGVFLVLLLGEIDLSVGWVSGLCASVMAVLSVRHGWAPVLAIVAALVVGVAVG
ALQGSLFAVFGVPSFVVTLAGFIAWQGVQLKVLGRDGSLNLPDSEITKLTSTFFTDATGWVIAGIAVAGYAGAQLAEVRG
RRRAGLRPRPIAEVAVRVVVVGGALIAAVAILNDDRGLPLALLIFGCLVLLVDLVSRRTSYGRHLYAVGGNVEAARRAGI
NVRALRVSAFAAASCLAGVGGVLAAARLTSVTQASGGSDTLLNAIAAAVIGGTSLFGGRGRAWSALLGILVIGSIANGMD
LLGLDQSVKFIITGSVLLAAVLLDAAARRGRQASGRG

Sequences:

>Translated_437_residues
MSEFAPGAAEPTASPAQPNPAARPVGAVATGRGDAAVDPRLLFAGPGLRGLAGSALRHVRAGELGSLPVIVGLVVIWTIF
QFQNSNFLTSYNLTNLALQVAATGTIATGVFLVLLLGEIDLSVGWVSGLCASVMAVLSVRHGWAPVLAIVAALVVGVAVG
ALQGSLFAVFGVPSFVVTLAGFIAWQGVQLKVLGRDGSLNLPDSEITKLTSTFFTDATGWVIAGIAVAGYAGAQLAEVRG
RRRAGLRPRPIAEVAVRVVVVGGALIAAVAILNDDRGLPLALLIFGCLVLLVDLVSRRTSYGRHLYAVGGNVEAARRAGI
NVRALRVSAFAAASCLAGVGGVLAAARLTSVTQASGGSDTLLNAIAAAVIGGTSLFGGRGRAWSALLGILVIGSIANGMD
LLGLDQSVKFIITGSVLLAAVLLDAAARRGRQASGRG
>Mature_436_residues
SEFAPGAAEPTASPAQPNPAARPVGAVATGRGDAAVDPRLLFAGPGLRGLAGSALRHVRAGELGSLPVIVGLVVIWTIFQ
FQNSNFLTSYNLTNLALQVAATGTIATGVFLVLLLGEIDLSVGWVSGLCASVMAVLSVRHGWAPVLAIVAALVVGVAVGA
LQGSLFAVFGVPSFVVTLAGFIAWQGVQLKVLGRDGSLNLPDSEITKLTSTFFTDATGWVIAGIAVAGYAGAQLAEVRGR
RRAGLRPRPIAEVAVRVVVVGGALIAAVAILNDDRGLPLALLIFGCLVLLVDLVSRRTSYGRHLYAVGGNVEAARRAGIN
VRALRVSAFAAASCLAGVGGVLAAARLTSVTQASGGSDTLLNAIAAAVIGGTSLFGGRGRAWSALLGILVIGSIANGMDL
LGLDQSVKFIITGSVLLAAVLLDAAARRGRQASGRG

Specific function: Part of the binding-protein-dependent transport system for D-xylose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4214

COG function: function code G; ABC-type xylose transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789992, Length=366, Percent_Identity=35.5191256830601, Blast_Score=169, Evalue=4e-43,
Organism=Escherichia coli, GI1788896, Length=366, Percent_Identity=31.9672131147541, Blast_Score=118, Evalue=9e-28,
Organism=Escherichia coli, GI1790191, Length=152, Percent_Identity=38.8157894736842, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1790524, Length=149, Percent_Identity=36.9127516778523, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI145693152, Length=157, Percent_Identity=34.3949044585987, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI87082395, Length=321, Percent_Identity=27.7258566978193, Blast_Score=83, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 44228; Mature: 44097

Theoretical pI: Translated: 11.33; Mature: 11.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEFAPGAAEPTASPAQPNPAARPVGAVATGRGDAAVDPRLLFAGPGLRGLAGSALRHVR
CCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
AGELGSLPVIVGLVVIWTIFQFQNSNFLTSYNLTNLALQVAATGTIATGVFLVLLLGEID
CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECHHHHEEEEHCCCHHHHHHHHHHHHHHHC
LSVGWVSGLCASVMAVLSVRHGWAPVLAIVAALVVGVAVGALQGSLFAVFGVPSFVVTLA
CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHEECCHHHHHHHHH
GFIAWQGVQLKVLGRDGSLNLPDSEITKLTSTFFTDATGWVIAGIAVAGYAGAQLAEVRG
HHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHH
RRRAGLRPRPIAEVAVRVVVVGGALIAAVAILNDDRGLPLALLIFGCLVLLVDLVSRRTS
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
YGRHLYAVGGNVEAARRAGINVRALRVSAFAAASCLAGVGGVLAAARLTSVTQASGGSDT
CCCEEEEECCCHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
LLNAIAAAVIGGTSLFGGRGRAWSALLGILVIGSIANGMDLLGLDQSVKFIITGSVLLAA
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEEHHHHHHH
VLLDAAARRGRQASGRG
HHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SEFAPGAAEPTASPAQPNPAARPVGAVATGRGDAAVDPRLLFAGPGLRGLAGSALRHVR
CCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHH
AGELGSLPVIVGLVVIWTIFQFQNSNFLTSYNLTNLALQVAATGTIATGVFLVLLLGEID
CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECHHHHEEEEHCCCHHHHHHHHHHHHHHHC
LSVGWVSGLCASVMAVLSVRHGWAPVLAIVAALVVGVAVGALQGSLFAVFGVPSFVVTLA
CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHEECCHHHHHHHHH
GFIAWQGVQLKVLGRDGSLNLPDSEITKLTSTFFTDATGWVIAGIAVAGYAGAQLAEVRG
HHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHH
RRRAGLRPRPIAEVAVRVVVVGGALIAAVAILNDDRGLPLALLIFGCLVLLVDLVSRRTS
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
YGRHLYAVGGNVEAARRAGINVRALRVSAFAAASCLAGVGGVLAAARLTSVTQASGGSDT
CCCEEEEECCCHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
LLNAIAAAVIGGTSLFGGRGRAWSALLGILVIGSIANGMDLLGLDQSVKFIITGSVLLAA
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEEHHHHHHH
VLLDAAARRGRQASGRG
HHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]