| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158316933
Identifier: 158316933
GI number: 158316933
Start: 6212856
End: 6213755
Strand: Direct
Name: 158316933
Synonym: Franean1_5177
Alternate gene names: NA
Gene position: 6212856-6213755 (Clockwise)
Preceding gene: 158316932
Following gene: 158316934
Centisome position: 69.17
GC content: 76.44
Gene sequence:
>900_bases GTGAGCCTGCACAGTCCCGCACCACATCCAGGCCTCCCGGGGGACCCGTTCGTCCCGGCCGGCCGGCCGGCGGCGCTCGG CGGGACGCGCCCGGCGTCGGCGCAGCCGCCCGAGCAGGCCGCGCCGGCACGGCTCGCCCCGCTGACCCGAAGCGCCCGTT CCCACCCGGAGGGCGCTAAGCGGCACTCTCCGACGTCCGGCCAGCGCGACCAAGGTGCACGCCCTAACGTTGCCGCCATG GGGGGCACGCGGGCACCGAGCGACGCTCCGGCGCTCTTCGTGGCCGCCACCGAGGCGCTGCGGGCGGCGTTGGAGGAGCT GCGGCCGGATGTCGCCGTCCGCGAGATCCCCGCGCCCGCCCGGATCGCTCCCTACGCGTTCGCTCTCGCCGGGGGCCTCA CCGATGACGACGAGGCGGCCTCCGGCCGGTTCGTGCTGCTGTTCGACCCCGATGGGCAGGACGCCTGGGAGGGCACCACC CGGATCGTCTGCTATGCGCGCGCCTCGGTGGACCCGGAGGTCGCCGACGACCCGCTGTTGCCCGGGGTCGCCTGGTCGTG GCTGCGGGAGTCGTTGCAGTCGCACGGCGCCGAGCTCGGCGCCCTCGGCGGGACGGTCACCACCACCTCGTCCCGGCGCT TCGGGGTGCTCGCCACCGACGGCGACAACTTCGACGTCGAGCTCCGGTGTTCCTGGTCACCACGCTGGGCAGGATCGGTG GAGGAAGCCGAGGACCCGACGGTGCCGGAGCCGCCGCACGGCGGGGCCGACGGGGCGGCGCCGTGGGACCCGGCGGACGC CGCCGCGCACCTGCACTCCTTCGCCGACCTGCTGGCCGCGATGGCGGGGCTGCCGCCGCGCCTCTCCGGGGTCGTACCGC TACCTGCTCGCCGCGCCTGA
Upstream 100 bases:
>100_bases CCGCGGTGCCACCGGCGGGTGCCGGGGCCGACCGGCCCGTGACCGTCGTAACCGTTACCGCGCGCCGCGGCGCCGGCCGA TCCGATTCCAGGGCCGTGGC
Downstream 100 bases:
>100_bases GCAGATCCGGACCTCCCCGTCCAAGCACTGCGCGCCGGGAATGTCAACGGAACGCATCTGCAACGACTACCTTGGAGCCA CCATCGAACACGAAGCGTAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 299; Mature: 298
Protein sequence:
>299_residues MSLHSPAPHPGLPGDPFVPAGRPAALGGTRPASAQPPEQAAPARLAPLTRSARSHPEGAKRHSPTSGQRDQGARPNVAAM GGTRAPSDAPALFVAATEALRAALEELRPDVAVREIPAPARIAPYAFALAGGLTDDDEAASGRFVLLFDPDGQDAWEGTT RIVCYARASVDPEVADDPLLPGVAWSWLRESLQSHGAELGALGGTVTTTSSRRFGVLATDGDNFDVELRCSWSPRWAGSV EEAEDPTVPEPPHGGADGAAPWDPADAAAHLHSFADLLAAMAGLPPRLSGVVPLPARRA
Sequences:
>Translated_299_residues MSLHSPAPHPGLPGDPFVPAGRPAALGGTRPASAQPPEQAAPARLAPLTRSARSHPEGAKRHSPTSGQRDQGARPNVAAM GGTRAPSDAPALFVAATEALRAALEELRPDVAVREIPAPARIAPYAFALAGGLTDDDEAASGRFVLLFDPDGQDAWEGTT RIVCYARASVDPEVADDPLLPGVAWSWLRESLQSHGAELGALGGTVTTTSSRRFGVLATDGDNFDVELRCSWSPRWAGSV EEAEDPTVPEPPHGGADGAAPWDPADAAAHLHSFADLLAAMAGLPPRLSGVVPLPARRA >Mature_298_residues SLHSPAPHPGLPGDPFVPAGRPAALGGTRPASAQPPEQAAPARLAPLTRSARSHPEGAKRHSPTSGQRDQGARPNVAAMG GTRAPSDAPALFVAATEALRAALEELRPDVAVREIPAPARIAPYAFALAGGLTDDDEAASGRFVLLFDPDGQDAWEGTTR IVCYARASVDPEVADDPLLPGVAWSWLRESLQSHGAELGALGGTVTTTSSRRFGVLATDGDNFDVELRCSWSPRWAGSVE EAEDPTVPEPPHGGADGAAPWDPADAAAHLHSFADLLAAMAGLPPRLSGVVPLPARRA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30933; Mature: 30801
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: PS00047 HISTONE_H4
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLHSPAPHPGLPGDPFVPAGRPAALGGTRPASAQPPEQAAPARLAPLTRSARSHPEGAK CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHCCCCCHH RHSPTSGQRDQGARPNVAAMGGTRAPSDAPALFVAATEALRAALEELRPDVAVREIPAPA CCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCEEHHCCCCC RIAPYAFALAGGLTDDDEAASGRFVLLFDPDGQDAWEGTTRIVCYARASVDPEVADDPLL CHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCCCC PGVAWSWLRESLQSHGAELGALGGTVTTTSSRRFGVLATDGDNFDVELRCSWSPRWAGSV CHHHHHHHHHHHHHCCCCEECCCCEEEECCCCEEEEEEECCCCEEEEEEECCCCCCCCCC EEAEDPTVPEPPHGGADGAAPWDPADAAAHLHSFADLLAAMAGLPPRLSGVVPLPARRA CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure SLHSPAPHPGLPGDPFVPAGRPAALGGTRPASAQPPEQAAPARLAPLTRSARSHPEGAK CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHCCCCCHH RHSPTSGQRDQGARPNVAAMGGTRAPSDAPALFVAATEALRAALEELRPDVAVREIPAPA CCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCEEHHCCCCC RIAPYAFALAGGLTDDDEAASGRFVLLFDPDGQDAWEGTTRIVCYARASVDPEVADDPLL CHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCCCC PGVAWSWLRESLQSHGAELGALGGTVTTTSSRRFGVLATDGDNFDVELRCSWSPRWAGSV CHHHHHHHHHHHHHCCCCEECCCCEEEECCCCEEEEEEECCCCEEEEEEECCCCCCCCCC EEAEDPTVPEPPHGGADGAAPWDPADAAAHLHSFADLLAAMAGLPPRLSGVVPLPARRA CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA