| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158316839
Identifier: 158316839
GI number: 158316839
Start: 6082133
End: 6083041
Strand: Reverse
Name: 158316839
Synonym: Franean1_5082
Alternate gene names: NA
Gene position: 6083041-6082133 (Counterclockwise)
Preceding gene: 158316840
Following gene: 158316838
Centisome position: 67.72
GC content: 76.46
Gene sequence:
>909_bases ATGGGTGTCGGGGTGGCCGCCGTGCCGCCTGAGGACCGCTCACCCGGTGGTGCGGGCGGGAAGACGGGCAGGCGGAAGGC CGGCAGGAAGGGCCGGGCAGCCGCCGGATCCGGCGGGGCCGCGGCCGGGGCCGACGCCGAGGAGGCGCCCGTGCCGCTGC CCCCGCCGACCGCCTTCCCGGCGGCGGTGTCGGCCGTCTACCGGGGCCAGCTGGCCCGCGCCCGGGTGGCCCGGGTGCCG CTGCTGTTCGTCGCCGCGTTCCAGTCCCTGGGGATCATGATCCTGCTGCGGGGCATCGTCGACGTCGGCGACAACTCCGC GGCGGCCTCCGTCGTGGCCGGCTCGACGGTGCTCGTCGTGGCCTTCGTGGCGCTCAACCTGCTCGCGCAGCGGTTCGGGG CCCTGCGCGCGGCCGGGGCGCTCGACTACTACCTGACGCTGCCCATCCCCGGCGCCGCGGTGGTGCTCGGCACGGCCGCG TCGTACGCGACGTTCGCGGTGCCGGGCACGGTCGTCACCGTGGTGGTCGGCTCGCTCCTTTACGGGCTGCCGATGGGCGG CCTGTGGCTGCTGATCCCGGTGACGGTGCTCGCCGGGGCCAGCCTGGCCGGGATAGGCGCGGCGATCGGCCTGCTGGCGC CGAAGCCGGAGCTGGCCACGGTCGCCGGGCAGCTCGGCATGAGCGTGGTGCTCTTCCTCGGGGTGATCCCCGCCGACCGG CTGCCCGGCATCGGCCGGCTGGCCCGTGATCTGCTGCCCAGCAGCTACGCGGTGGACGCGCTCGCCGAGGGCTTCGCTCC GGCGGTGGACTGGGTGCACGTGACGGTCGATCTCGCGGTCTGCGCGGCGGTCGCAGCGGTGGCGCTCGTCGTCGCCGTGC GGTCGCTGCGGCACGCCGGCCGGTCCTGA
Upstream 100 bases:
>100_bases ATCTCACTCTCGGCGGAACCTGCCGTGATCTGGAGCGGACATGACCCTGACGACGCCTCACCCCGCCACCCCCGCGGGTC CGGCCGGCCTGCCGCCCGCG
Downstream 100 bases:
>100_bases GCGGGCATCCGGGCATCGCGGCCGCTTCAGTGGCGTGGCGGGCGCGGCCGTGGAGAAGGCGGGTACGGTCGACCCCCGGG CTTGGCGTCGACGGCGGTCG
Product: ABC-2 type transporter
Products: NA
Alternate protein names: Integral Membrane Transporter; ABC Transporter Integral Membrane Transporter; ABC Transporter Permease Protein; ABC Transporter Integral Membrane Subunit
Number of amino acids: Translated: 302; Mature: 301
Protein sequence:
>302_residues MGVGVAAVPPEDRSPGGAGGKTGRRKAGRKGRAAAGSGGAAAGADAEEAPVPLPPPTAFPAAVSAVYRGQLARARVARVP LLFVAAFQSLGIMILLRGIVDVGDNSAAASVVAGSTVLVVAFVALNLLAQRFGALRAAGALDYYLTLPIPGAAVVLGTAA SYATFAVPGTVVTVVVGSLLYGLPMGGLWLLIPVTVLAGASLAGIGAAIGLLAPKPELATVAGQLGMSVVLFLGVIPADR LPGIGRLARDLLPSSYAVDALAEGFAPAVDWVHVTVDLAVCAAVAAVALVVAVRSLRHAGRS
Sequences:
>Translated_302_residues MGVGVAAVPPEDRSPGGAGGKTGRRKAGRKGRAAAGSGGAAAGADAEEAPVPLPPPTAFPAAVSAVYRGQLARARVARVP LLFVAAFQSLGIMILLRGIVDVGDNSAAASVVAGSTVLVVAFVALNLLAQRFGALRAAGALDYYLTLPIPGAAVVLGTAA SYATFAVPGTVVTVVVGSLLYGLPMGGLWLLIPVTVLAGASLAGIGAAIGLLAPKPELATVAGQLGMSVVLFLGVIPADR LPGIGRLARDLLPSSYAVDALAEGFAPAVDWVHVTVDLAVCAAVAAVALVVAVRSLRHAGRS >Mature_301_residues GVGVAAVPPEDRSPGGAGGKTGRRKAGRKGRAAAGSGGAAAGADAEEAPVPLPPPTAFPAAVSAVYRGQLARARVARVPL LFVAAFQSLGIMILLRGIVDVGDNSAAASVVAGSTVLVVAFVALNLLAQRFGALRAAGALDYYLTLPIPGAAVVLGTAAS YATFAVPGTVVTVVVGSLLYGLPMGGLWLLIPVTVLAGASLAGIGAAIGLLAPKPELATVAGQLGMSVVLFLGVIPADRL PGIGRLARDLLPSSYAVDALAEGFAPAVDWVHVTVDLAVCAAVAAVALVVAVRSLRHAGRS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29825; Mature: 29694
Theoretical pI: Translated: 10.35; Mature: 10.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVGVAAVPPEDRSPGGAGGKTGRRKAGRKGRAAAGSGGAAAGADAEEAPVPLPPPTAFP CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH AAVSAVYRGQLARARVARVPLLFVAAFQSLGIMILLRGIVDVGDNSAAASVVAGSTVLVV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHH AFVALNLLAQRFGALRAAGALDYYLTLPIPGAAVVLGTAASYATFAVPGTVVTVVVGSLL HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCHHHHHHHCCCHHHHHHHHHHHH YGLPMGGLWLLIPVTVLAGASLAGIGAAIGLLAPKPELATVAGQLGMSVVLFLGVIPADR HHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC LPGIGRLARDLLPSSYAVDALAEGFAPAVDWVHVTVDLAVCAAVAAVALVVAVRSLRHAG CCCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC RS CC >Mature Secondary Structure GVGVAAVPPEDRSPGGAGGKTGRRKAGRKGRAAAGSGGAAAGADAEEAPVPLPPPTAFP CCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH AAVSAVYRGQLARARVARVPLLFVAAFQSLGIMILLRGIVDVGDNSAAASVVAGSTVLVV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHH AFVALNLLAQRFGALRAAGALDYYLTLPIPGAAVVLGTAASYATFAVPGTVVTVVVGSLL HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCHHHHHHHCCCHHHHHHHHHHHH YGLPMGGLWLLIPVTVLAGASLAGIGAAIGLLAPKPELATVAGQLGMSVVLFLGVIPADR HHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC LPGIGRLARDLLPSSYAVDALAEGFAPAVDWVHVTVDLAVCAAVAAVALVVAVRSLRHAG CCCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC RS CC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA