| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is 158316775
Identifier: 158316775
GI number: 158316775
Start: 6008808
End: 6010115
Strand: Reverse
Name: 158316775
Synonym: Franean1_5014
Alternate gene names: NA
Gene position: 6010115-6008808 (Counterclockwise)
Preceding gene: 158316776
Following gene: 158316770
Centisome position: 66.91
GC content: 70.34
Gene sequence:
>1308_bases ATGCCGAATACAGAGAATGTGGCCGCCGGGATGCCCCGCAGGCGGTCGCGGCGACGCTCGGTGTCCACCCGCCTGGGCGT CCTGGCGGTGGCGGCGAGCCTGCTGCTCGCCGCCGGATGCGGCGGCGGCAGCGCGGACCCGTCGACGGACGACAGCACCC CCAGCAGGGACATCTCCGCCGTCCTCGGGCCGATCGCCGAGGCCAAGGGCGCGCCGGTGCGGATCGGGATGATCTCGGAC GGCAAGGGTCCGGTGTCGGACCTCTCCGTCGAGTTCGACATGGCCAAAGCCACCGTCGGGTACCTGAACGAGCGCCGTTC CGGCATCGCGGGCCGGCCGATCGAGCTGGTGACGTGCGAGGCCCTGGCCGACCCGGCCAAGGGCACCGACTGCGCGAACC GGATGGTCGAGGAAGATGTCGTCGCCGTCGTCGTCGGCTCCTCGTCGATCGTGGAGAGCATCTGGCGGCCTCTGCACGAC GCTCGCGTGCCGGTGATGTTCCACTCCGCGAACGGCGCCCCGCTGCGGGACAGCGAGTCGACCTTCGCCATCACCGACTC CGCCTTCTCGCTGATCAACTTCCCGATCCAGCTGGCGAAGGAGAAGGGCGCCGGGAAGGTGACAGCGGTCACGATCGACG TGCCGTCCGCGACGGGCATCTACCGGACCGCCGCTCCGTCGGCGTTCGACGAGGCCGGCATCGAACTCTCGGTCGTGCCG ATCCCCCCGGGCACGGCCGACATGATTCCGCAGATGCAGAACATCGCCTCCGGCGACCCCGGCATCGTCGAGGTGACCGG AAACGACGCGTTCTGCATCGCCGCGTTCAACGGTCTGCGGGCGGTCGGATTCACCGGGACGGTCACGGGCGTCTCGCAGT GCATCACTGACAGGACCCGCAAGGCGGTGCCGGGCGATTTCCTGGAGGACATGCCCGTCCCCGCGACGGTGCCGCTCGGC ACGGACAACCCGGCGACCCAGCTGATCAACGCGGTCGCGACCACCTACGGCAAGGACGTCGACACCGGCCGCACGGCTGC GATGGCCATGTTCACGGTGTTCGCCGCCTTCCAGTCCGCGACCGGGGAGATCTCCGGCGAGGTCTCCCCGGAGACCATCA TCGCCGCGATCAAGGGGATGCCGGAGAAGGAGCTGCCGGCCGCCGGGGGGCTGCGGTTCCGCTGCAACGGCAAGGCCGAC CCGGACCTGCCGGCGGTCTGCGTCCGCGGCGGGCTGGTGACGACCCTCGACGAGGAGGGCCAGCCCACCGAGTACGAGGT GATCGGCAGCACCCCCATCGAGGACTAG
Upstream 100 bases:
>100_bases GCTCCAACGGACGGCGTCACGAGCCGTCGTGCCGCCCGGAGCGGCCCAGCCGGTGGAGGCGAACCGCCCCGGCCGACCAC AACCGAGACGAGGTAGATGT
Downstream 100 bases:
>100_bases TCGCTCAGTCGTCACCGTCGTGCTGGCGGTAGAGCGGCAGGTGGTTGGCCTTGTGCACGGCACGGAGCAGACCGATCGGA GCGGTGTCCAGGTCGCCGTC
Product: putative branched-chain amino acid transport system
Products: NA
Alternate protein names: Branched-Chain Amino Acid Transport System; Lipoprotein; Amino Acid ABC Transporter
Number of amino acids: Translated: 435; Mature: 434
Protein sequence:
>435_residues MPNTENVAAGMPRRRSRRRSVSTRLGVLAVAASLLLAAGCGGGSADPSTDDSTPSRDISAVLGPIAEAKGAPVRIGMISD GKGPVSDLSVEFDMAKATVGYLNERRSGIAGRPIELVTCEALADPAKGTDCANRMVEEDVVAVVVGSSSIVESIWRPLHD ARVPVMFHSANGAPLRDSESTFAITDSAFSLINFPIQLAKEKGAGKVTAVTIDVPSATGIYRTAAPSAFDEAGIELSVVP IPPGTADMIPQMQNIASGDPGIVEVTGNDAFCIAAFNGLRAVGFTGTVTGVSQCITDRTRKAVPGDFLEDMPVPATVPLG TDNPATQLINAVATTYGKDVDTGRTAAMAMFTVFAAFQSATGEISGEVSPETIIAAIKGMPEKELPAAGGLRFRCNGKAD PDLPAVCVRGGLVTTLDEEGQPTEYEVIGSTPIED
Sequences:
>Translated_435_residues MPNTENVAAGMPRRRSRRRSVSTRLGVLAVAASLLLAAGCGGGSADPSTDDSTPSRDISAVLGPIAEAKGAPVRIGMISD GKGPVSDLSVEFDMAKATVGYLNERRSGIAGRPIELVTCEALADPAKGTDCANRMVEEDVVAVVVGSSSIVESIWRPLHD ARVPVMFHSANGAPLRDSESTFAITDSAFSLINFPIQLAKEKGAGKVTAVTIDVPSATGIYRTAAPSAFDEAGIELSVVP IPPGTADMIPQMQNIASGDPGIVEVTGNDAFCIAAFNGLRAVGFTGTVTGVSQCITDRTRKAVPGDFLEDMPVPATVPLG TDNPATQLINAVATTYGKDVDTGRTAAMAMFTVFAAFQSATGEISGEVSPETIIAAIKGMPEKELPAAGGLRFRCNGKAD PDLPAVCVRGGLVTTLDEEGQPTEYEVIGSTPIED >Mature_434_residues PNTENVAAGMPRRRSRRRSVSTRLGVLAVAASLLLAAGCGGGSADPSTDDSTPSRDISAVLGPIAEAKGAPVRIGMISDG KGPVSDLSVEFDMAKATVGYLNERRSGIAGRPIELVTCEALADPAKGTDCANRMVEEDVVAVVVGSSSIVESIWRPLHDA RVPVMFHSANGAPLRDSESTFAITDSAFSLINFPIQLAKEKGAGKVTAVTIDVPSATGIYRTAAPSAFDEAGIELSVVPI PPGTADMIPQMQNIASGDPGIVEVTGNDAFCIAAFNGLRAVGFTGTVTGVSQCITDRTRKAVPGDFLEDMPVPATVPLGT DNPATQLINAVATTYGKDVDTGRTAAMAMFTVFAAFQSATGEISGEVSPETIIAAIKGMPEKELPAAGGLRFRCNGKADP DLPAVCVRGGLVTTLDEEGQPTEYEVIGSTPIED
Specific function: Unknown
COG id: COG0683
COG function: function code E; ABC-type branched-chain amino acid transport systems, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44906; Mature: 44775
Theoretical pI: Translated: 4.41; Mature: 4.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNTENVAAGMPRRRSRRRSVSTRLGVLAVAASLLLAAGCGGGSADPSTDDSTPSRDISA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH VLGPIAEAKGAPVRIGMISDGKGPVSDLSVEFDMAKATVGYLNERRSGIAGRPIELVTCE HHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCEEEEEEH ALADPAKGTDCANRMVEEDVVAVVVGSSSIVESIWRPLHDARVPVMFHSANGAPLRDSES HHCCCCCCCHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC TFAITDSAFSLINFPIQLAKEKGAGKVTAVTIDVPSATGIYRTAAPSAFDEAGIELSVVP EEEEEHHHHHHHHCCHHHHHCCCCCEEEEEEEECCCCCCCEECCCCCCHHHCCCEEEEEE IPPGTADMIPQMQNIASGDPGIVEVTGNDAFCIAAFNGLRAVGFTGTVTGVSQCITDRTR CCCCCHHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCCEEECCCCHHHHHHHHHHHHHH KAVPGDFLEDMPVPATVPLGTDNPATQLINAVATTYGKDVDTGRTAAMAMFTVFAAFQSA HCCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHC TGEISGEVSPETIIAAIKGMPEKELPAAGGLRFRCNGKADPDLPAVCVRGGLVTTLDEEG CCCCCCCCCHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCCCCHHHHCCCEEEEECCCC QPTEYEVIGSTPIED CCCEEEEECCCCCCC >Mature Secondary Structure PNTENVAAGMPRRRSRRRSVSTRLGVLAVAASLLLAAGCGGGSADPSTDDSTPSRDISA CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH VLGPIAEAKGAPVRIGMISDGKGPVSDLSVEFDMAKATVGYLNERRSGIAGRPIELVTCE HHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCEEEEEEH ALADPAKGTDCANRMVEEDVVAVVVGSSSIVESIWRPLHDARVPVMFHSANGAPLRDSES HHCCCCCCCHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC TFAITDSAFSLINFPIQLAKEKGAGKVTAVTIDVPSATGIYRTAAPSAFDEAGIELSVVP EEEEEHHHHHHHHCCHHHHHCCCCCEEEEEEEECCCCCCCEECCCCCCHHHCCCEEEEEE IPPGTADMIPQMQNIASGDPGIVEVTGNDAFCIAAFNGLRAVGFTGTVTGVSQCITDRTR CCCCCHHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCCEEECCCCHHHHHHHHHHHHHH KAVPGDFLEDMPVPATVPLGTDNPATQLINAVATTYGKDVDTGRTAAMAMFTVFAAFQSA HCCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHC TGEISGEVSPETIIAAIKGMPEKELPAAGGLRFRCNGKADPDLPAVCVRGGLVTTLDEEG CCCCCCCCCHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCCCCHHHHCCCEEEEECCCC QPTEYEVIGSTPIED CCCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA