| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is trmI [H]
Identifier: 158316647
GI number: 158316647
Start: 5858866
End: 5859942
Strand: Reverse
Name: trmI [H]
Synonym: Franean1_4884
Alternate gene names: 158316647
Gene position: 5859942-5858866 (Counterclockwise)
Preceding gene: 158316648
Following gene: 158316645
Centisome position: 65.24
GC content: 74.19
Gene sequence:
>1077_bases ATGCCCGAGGTACCCGAGGTGCCGCGGCCGACCGGCGCGGCGCGGCGCCGCGGGACGTTCACCAAGGGCGACCGCGTCCA GCTGACCGACCCCAAGGGCCGGCGGCACACGGTCGTCCTCGAGCCGGGCCGGCAGTTCCACACCCACCGGGGGGCGATTC CGCACGACGACCTGCTCGGCCGGCCCGAGGGTGTCGTCGTGAGCAGCACCGGGGGCACCGACTACCTGGCACTGCGGCCG CTGCTGGCCGACTTCGTGCTGTCGATGCCGCGCGGCGCGACCGTCGTCTACCCGAAGGACGCGGCGCAGATCGTCATGTA CGCCGACGTCTTCCCCGGCGCGCAGGTGCTGGAGGCCGGTGCCGGTTCCGGCGCGCTGTCCTGCGCCTTGCTGCGGGCCG TGGGCGACGGCGGCCGGCTGGTCTCCTACGAGCGGCGTCCCGACTTCGCGGAGGTCGCCCGGCGCAACATCGAGACCTTT TTCGGCGGACCACATCCGGCTCATACACTGCATGTCGGTGATCTGGCCGAGTCGGCCGAGCGGGGCATGGACCGGGTGAT CCTCGACATGCTCGCCCCGTGGGACGTGCTGCCCGCGGCCGCGGCGGCGCTCGTCCCCGGCGGCGTGCTGTGCGCGTACG TCGCGACGACCACGCAGCTCTCCCGGACGGTCGAGGCGCTGCGCGAGTTCGGCTGCTTCGCGGAGCCCGCGGCGTGGGAG ACGATGATGCGCGACTGGCACGTCGAGGGCCTCGCCGTGCGCCCCGGTCACCGCATGGTCGGGCACACCGGTTTCCTGGT GACAGCGCGCCGGTTGGCGGACGGCGTCACTGCTCCACCGAGGCGGCGGCGCCCGGCCAAGGGCTCCTATCCGGAGCCGG CGACCGCTCCGGAGCCGGTATCCGCCGACCGCCCGGCCGAGCAGGGCCAGCCGGCGGGAGCGGGTAGCTTGCCGGGCCTG TACGGCCAGCCCGATCGCCAGGTCATCGCGGAGCCTCAGGCCGAGCCGGAGCTTCAGGCCGAGCCGGAGCTTCAGGCCGA GCCTGAGCCTCGAGTCGACGCCGGCTCCGACGGCTGA
Upstream 100 bases:
>100_bases CGCGGTCGCGTCCCGCCCGCCCCTGCCGGACCTCGCGGAGCTTCCGCCCCTGCCGGACCACGCGGACCCCGCGGCACCGG AGATGCCCGCGGCACCGGAG
Downstream 100 bases:
>100_bases CGCGATGCCGGTCGCGGCCGGGCGATCCGCGGAGGCGCCCGCGCGGCGGGCCCGGGCGCCGGACCCCCACGGGTGGGGGC GCGGCGGGGGCGCCGGGGTG
Product: tRNA (adenine-N(1)-)-methyltransferase
Products: NA
Alternate protein names: tRNA(m1A58)-methyltransferase; tRNA(m1A58)MTase [H]
Number of amino acids: Translated: 358; Mature: 357
Protein sequence:
>358_residues MPEVPEVPRPTGAARRRGTFTKGDRVQLTDPKGRRHTVVLEPGRQFHTHRGAIPHDDLLGRPEGVVVSSTGGTDYLALRP LLADFVLSMPRGATVVYPKDAAQIVMYADVFPGAQVLEAGAGSGALSCALLRAVGDGGRLVSYERRPDFAEVARRNIETF FGGPHPAHTLHVGDLAESAERGMDRVILDMLAPWDVLPAAAAALVPGGVLCAYVATTTQLSRTVEALREFGCFAEPAAWE TMMRDWHVEGLAVRPGHRMVGHTGFLVTARRLADGVTAPPRRRRPAKGSYPEPATAPEPVSADRPAEQGQPAGAGSLPGL YGQPDRQVIAEPQAEPELQAEPELQAEPEPRVDAGSDG
Sequences:
>Translated_358_residues MPEVPEVPRPTGAARRRGTFTKGDRVQLTDPKGRRHTVVLEPGRQFHTHRGAIPHDDLLGRPEGVVVSSTGGTDYLALRP LLADFVLSMPRGATVVYPKDAAQIVMYADVFPGAQVLEAGAGSGALSCALLRAVGDGGRLVSYERRPDFAEVARRNIETF FGGPHPAHTLHVGDLAESAERGMDRVILDMLAPWDVLPAAAAALVPGGVLCAYVATTTQLSRTVEALREFGCFAEPAAWE TMMRDWHVEGLAVRPGHRMVGHTGFLVTARRLADGVTAPPRRRRPAKGSYPEPATAPEPVSADRPAEQGQPAGAGSLPGL YGQPDRQVIAEPQAEPELQAEPELQAEPEPRVDAGSDG >Mature_357_residues PEVPEVPRPTGAARRRGTFTKGDRVQLTDPKGRRHTVVLEPGRQFHTHRGAIPHDDLLGRPEGVVVSSTGGTDYLALRPL LADFVLSMPRGATVVYPKDAAQIVMYADVFPGAQVLEAGAGSGALSCALLRAVGDGGRLVSYERRPDFAEVARRNIETFF GGPHPAHTLHVGDLAESAERGMDRVILDMLAPWDVLPAAAAALVPGGVLCAYVATTTQLSRTVEALREFGCFAEPAAWET MMRDWHVEGLAVRPGHRMVGHTGFLVTARRLADGVTAPPRRRRPAKGSYPEPATAPEPVSADRPAEQGQPAGAGSLPGLY GQPDRQVIAEPQAEPELQAEPELQAEPEPRVDAGSDG
Specific function: Catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in tRNA. Is required for cell growth at extreme temperatures [H]
COG id: COG2519
COG function: function code J; tRNA(1-methyladenosine) methyltransferase and related methyltransferases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the methyltransferase superfamily. TrmI family [H]
Homologues:
Organism=Homo sapiens, GI222831587, Length=217, Percent_Identity=32.7188940092166, Blast_Score=120, Evalue=1e-27, Organism=Homo sapiens, GI123173772, Length=278, Percent_Identity=28.7769784172662, Blast_Score=92, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17509459, Length=287, Percent_Identity=26.8292682926829, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI24650257, Length=208, Percent_Identity=30.2884615384615, Blast_Score=73, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014816 [H]
Pfam domain/function: PF08704 GCD14 [H]
EC number: =2.1.1.36 [H]
Molecular weight: Translated: 38202; Mature: 38070
Theoretical pI: Translated: 6.19; Mature: 6.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEVPEVPRPTGAARRRGTFTKGDRVQLTDPKGRRHTVVLEPGRQFHTHRGAIPHDDLLG CCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCEEEEEECCCHHHHHCCCCCCCHHHCC RPEGVVVSSTGGTDYLALRPLLADFVLSMPRGATVVYPKDAAQIVMYADVFPGAQVLEAG CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEECCCCCHHHHHCC AGSGALSCALLRAVGDGGRLVSYERRPDFAEVARRNIETFFGGPHPAHTLHVGDLAESAE CCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHH RGMDRVILDMLAPWDVLPAAAAALVPGGVLCAYVATTTQLSRTVEALREFGCFAEPAAWE HHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH TMMRDWHVEGLAVRPGHRMVGHTGFLVTARRLADGVTAPPRRRRPAKGSYPEPATAPEPV HHHHHHCCCCEEECCCCHHHCCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCC SADRPAEQGQPAGAGSLPGLYGQPDRQVIAEPQAEPELQAEPELQAEPEPRVDAGSDG CCCCCHHCCCCCCCCCCCCCCCCCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure PEVPEVPRPTGAARRRGTFTKGDRVQLTDPKGRRHTVVLEPGRQFHTHRGAIPHDDLLG CCCCCCCCCCCCHHHCCCCCCCCEEEEECCCCCEEEEEECCCHHHHHCCCCCCCHHHCC RPEGVVVSSTGGTDYLALRPLLADFVLSMPRGATVVYPKDAAQIVMYADVFPGAQVLEAG CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEECCCCCHHHHHCC AGSGALSCALLRAVGDGGRLVSYERRPDFAEVARRNIETFFGGPHPAHTLHVGDLAESAE CCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHH RGMDRVILDMLAPWDVLPAAAAALVPGGVLCAYVATTTQLSRTVEALREFGCFAEPAAWE HHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH TMMRDWHVEGLAVRPGHRMVGHTGFLVTARRLADGVTAPPRRRRPAKGSYPEPATAPEPV HHHHHHCCCCEEECCCCHHHCCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCC SADRPAEQGQPAGAGSLPGLYGQPDRQVIAEPQAEPELQAEPELQAEPEPRVDAGSDG CCCCCHHCCCCCCCCCCCCCCCCCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA