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The map label for this gene is ydeP [H]

Identifier: 158316576

GI number: 158316576

Start: 5745526

End: 5746068

Strand: Reverse

Name: ydeP [H]

Synonym: Franean1_4812

Alternate gene names: 158316576

Gene position: 5746068-5745526 (Counterclockwise)

Preceding gene: 158316580

Following gene: 158316575

Centisome position: 63.97

GC content: 69.61

Gene sequence:

>543_bases
ATGCTGCCGCTGCGCGCGAGGTCGACGGCGAGACGTCGGATCAATCTCAACTTCATCGACACGGAAAGTAGTATTTGCCG
AGAGAGAGCCGCCGTCAACCACCGACCGGAGGTCGCGGTGACCCACAACGTGCCAGCGGCCCACAACGTGCCGGTACAGC
CGGCGGAGCACGGTTCGCTCGCCGCCGACTGGGAGCCTCGGGGCGAGGCCGACTGCCGGGTACGGACGATCATGGATCGG
GTGGGTGACAAGTGGTCGGTCGCGGTCGTCACCGAGCTCACCACCGGCCCGCGGCGCTTCAGTGAGCTGAAGCGGGCGCT
GCCCGGCATCAACCAGCGCATGCTGACCAGCACGCTGCGCGTCCTGGAGCGGGACGGGCTCGTCACCCGCACGGTGTACC
CGCAGGTGCCCCCGCGCGTCGACTACGAGCTCACCGGCCTGGGGCGAACCCTGCTCGACACCGTCGCCTCGCTGCTCGAC
TGGGCCGAGCGCAACGCCGACGGGATCGACGAGGCCCGTCGGCGTTACGACGCCCGCGGTTAG

Upstream 100 bases:

>100_bases
CGGGACCGGATCTCGAGCGACCGGATCGTGACGAGGCGGCGCGGGAGCGGTCGGACGCCCTGGCGGCCGGCGTGGCCGAG
GAGCGTCTCAGGAACAGCGC

Downstream 100 bases:

>100_bases
TCCGCTAGTCCTGTCTTCCGCACGTGCGTGCGGTGAGACAGCTACGTGATGTCTTGTTCGGATCACGTCGGGATGGCCGC
GATCGGTAGTGACGGGCCTG

Product: HxlR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MLPLRARSTARRRINLNFIDTESSICRERAAVNHRPEVAVTHNVPAAHNVPVQPAEHGSLAADWEPRGEADCRVRTIMDR
VGDKWSVAVVTELTTGPRRFSELKRALPGINQRMLTSTLRVLERDGLVTRTVYPQVPPRVDYELTGLGRTLLDTVASLLD
WAERNADGIDEARRRYDARG

Sequences:

>Translated_180_residues
MLPLRARSTARRRINLNFIDTESSICRERAAVNHRPEVAVTHNVPAAHNVPVQPAEHGSLAADWEPRGEADCRVRTIMDR
VGDKWSVAVVTELTTGPRRFSELKRALPGINQRMLTSTLRVLERDGLVTRTVYPQVPPRVDYELTGLGRTLLDTVASLLD
WAERNADGIDEARRRYDARG
>Mature_180_residues
MLPLRARSTARRRINLNFIDTESSICRERAAVNHRPEVAVTHNVPAAHNVPVQPAEHGSLAADWEPRGEADCRVRTIMDR
VGDKWSVAVVTELTTGPRRFSELKRALPGINQRMLTSTLRVLERDGLVTRTVYPQVPPRVDYELTGLGRTLLDTVASLLD
WAERNADGIDEARRRYDARG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=113, Percent_Identity=38.0530973451327, Blast_Score=91, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 20258; Mature: 20258

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPLRARSTARRRINLNFIDTESSICRERAAVNHRPEVAVTHNVPAAHNVPVQPAEHGSL
CCCCCCCHHHHHEECEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCE
AADWEPRGEADCRVRTIMDRVGDKWSVAVVTELTTGPRRFSELKRALPGINQRMLTSTLR
ECCCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHH
VLERDGLVTRTVYPQVPPRVDYELTGLGRTLLDTVASLLDWAERNADGIDEARRRYDARG
HHHHCCCEEEEECCCCCCCCCEEHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MLPLRARSTARRRINLNFIDTESSICRERAAVNHRPEVAVTHNVPAAHNVPVQPAEHGSL
CCCCCCCHHHHHEECEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCE
AADWEPRGEADCRVRTIMDRVGDKWSVAVVTELTTGPRRFSELKRALPGINQRMLTSTLR
ECCCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHH
VLERDGLVTRTVYPQVPPRVDYELTGLGRTLLDTVASLLDWAERNADGIDEARRRYDARG
HHHHCCCEEEEECCCCCCCCCEEHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]