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The map label for this gene is ykgD [C]

Identifier: 158316530

GI number: 158316530

Start: 5691455

End: 5692393

Strand: Reverse

Name: ykgD [C]

Synonym: Franean1_4765

Alternate gene names: 158316530

Gene position: 5692393-5691455 (Counterclockwise)

Preceding gene: 158316533

Following gene: 158316529

Centisome position: 63.38

GC content: 68.8

Gene sequence:

>939_bases
ATGGACCTGCTCAGCGACCTGCTCTCCGCCATGCGCACCGGGCAGCCATACGCGGGGAAGACCAGGTGCCGGGCCCCCTG
GGGGGTGCTCTTCCCAGCCGGGGACGCGGCGGCGTGCCACGTGGTTCTGCAAGGCTCGTGCTGGCTGATCCCCCAGCACG
GCGCCCCGCTGGCACTCGGCGTCGGCGACGTGGTGTTCACACCACACGGAGACGCGCACGCCATCGTCGACCAGCCCGGC
AGCCCCACAATCGACTACCACCCCAAGCGCGGCGACGAGTCGACCATCAGGGAGATGACCATCCCCGGCTCGGGCGCCAC
CACGGAAATGCTGTGTGCCTCCTACAGTTTCGACCAGGCCCGCCCGCACCCGCTGCTCCACGGCCTGCCCCAGGTCGTCC
ACCTACCCGCCCGCGTCGGGCACCACTCCGATCTTCGTGCCGCCGTCGATCTCCTGGGCAACGAACTGCGACAGCCCCGC
GCCGGTACGGAGGCCATCGTGCCCGCGCTCATCGACATGCTGCTGCTCTACGTCCTGCGCGCCTGGCTCGAAGAACAGTC
CGGACATGCCCTGACCGGCTGGGTCATGGCACTGAACGACCCGGCGATCTCAACGGCGCTGCACCACATCCATCGCCACC
CCGGGCGCCCGTGGAGCGTCGAGGATCTGGCCAGGGAGGCCGGACTGTCACGCGCGGCCTTCGCCAAACGGTTCGCCAGC
ACCGTCGGTCAGCCCCCACTGGCGTACCTGACGTGGTGGCGGATGACGACTGCCGCGCGACTGCTGCGCGAGTCCAAGGC
CCCACTGAGCGCGGTCGCCGAACGTTGTGGCTACCGCTCGGAATTCGCGTTCGCCAAGGCGTTCAAACGTGAATTCGGCG
CCGCACCCGGCAGGTACCGACGCCAAGGACAGCCTGGTCAAGATCTATCCGAGAAGTGA

Upstream 100 bases:

>100_bases
CCTGGACTTCGACCGTACGTTTCCCGCTGAAGACAGTGAATAGCTTGCTGTCTACAATTCATGTCCAATCATCTATGCAG
GCTGCAGATAGGGTCTGAGC

Downstream 100 bases:

>100_bases
CTGATGGGGCCCGCAATCGCATCGGGATTCACTTCCCCGACGGCTCCGGAGTGTGGCCGGCCGTCGCCGAGCTCCCTTTC
CATCCTGGAACGGGTGGCCA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MDLLSDLLSAMRTGQPYAGKTRCRAPWGVLFPAGDAAACHVVLQGSCWLIPQHGAPLALGVGDVVFTPHGDAHAIVDQPG
SPTIDYHPKRGDESTIREMTIPGSGATTEMLCASYSFDQARPHPLLHGLPQVVHLPARVGHHSDLRAAVDLLGNELRQPR
AGTEAIVPALIDMLLLYVLRAWLEEQSGHALTGWVMALNDPAISTALHHIHRHPGRPWSVEDLAREAGLSRAAFAKRFAS
TVGQPPLAYLTWWRMTTAARLLRESKAPLSAVAERCGYRSEFAFAKAFKREFGAAPGRYRRQGQPGQDLSEK

Sequences:

>Translated_312_residues
MDLLSDLLSAMRTGQPYAGKTRCRAPWGVLFPAGDAAACHVVLQGSCWLIPQHGAPLALGVGDVVFTPHGDAHAIVDQPG
SPTIDYHPKRGDESTIREMTIPGSGATTEMLCASYSFDQARPHPLLHGLPQVVHLPARVGHHSDLRAAVDLLGNELRQPR
AGTEAIVPALIDMLLLYVLRAWLEEQSGHALTGWVMALNDPAISTALHHIHRHPGRPWSVEDLAREAGLSRAAFAKRFAS
TVGQPPLAYLTWWRMTTAARLLRESKAPLSAVAERCGYRSEFAFAKAFKREFGAAPGRYRRQGQPGQDLSEK
>Mature_312_residues
MDLLSDLLSAMRTGQPYAGKTRCRAPWGVLFPAGDAAACHVVLQGSCWLIPQHGAPLALGVGDVVFTPHGDAHAIVDQPG
SPTIDYHPKRGDESTIREMTIPGSGATTEMLCASYSFDQARPHPLLHGLPQVVHLPARVGHHSDLRAAVDLLGNELRQPR
AGTEAIVPALIDMLLLYVLRAWLEEQSGHALTGWVMALNDPAISTALHHIHRHPGRPWSVEDLAREAGLSRAAFAKRFAS
TVGQPPLAYLTWWRMTTAARLLRESKAPLSAVAERCGYRSEFAFAKAFKREFGAAPGRYRRQGQPGQDLSEK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=309, Percent_Identity=28.4789644012945, Blast_Score=103, Evalue=2e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33986; Mature: 33986

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLLSDLLSAMRTGQPYAGKTRCRAPWGVLFPAGDAAACHVVLQGSCWLIPQHGAPLALG
CCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCEEEEECCCCCEEEE
VGDVVFTPHGDAHAIVDQPGSPTIDYHPKRGDESTIREMTIPGSGATTEMLCASYSFDQA
CCCEEECCCCCCEEEECCCCCCCCCCCCCCCCHHHHHEEECCCCCCHHHHHHHHCCCCCC
RPHPLLHGLPQVVHLPARVGHHSDLRAAVDLLGNELRQPRAGTEAIVPALIDMLLLYVLR
CCCHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
AWLEEQSGHALTGWVMALNDPAISTALHHIHRHPGRPWSVEDLAREAGLSRAAFAKRFAS
HHHHHCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHH
TVGQPPLAYLTWWRMTTAARLLRESKAPLSAVAERCGYRSEFAFAKAFKREFGAAPGRYR
HHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
RQGQPGQDLSEK
CCCCCCCCCCCC
>Mature Secondary Structure
MDLLSDLLSAMRTGQPYAGKTRCRAPWGVLFPAGDAAACHVVLQGSCWLIPQHGAPLALG
CCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCEEEEECCCCCEEEE
VGDVVFTPHGDAHAIVDQPGSPTIDYHPKRGDESTIREMTIPGSGATTEMLCASYSFDQA
CCCEEECCCCCCEEEECCCCCCCCCCCCCCCCHHHHHEEECCCCCCHHHHHHHHCCCCCC
RPHPLLHGLPQVVHLPARVGHHSDLRAAVDLLGNELRQPRAGTEAIVPALIDMLLLYVLR
CCCHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
AWLEEQSGHALTGWVMALNDPAISTALHHIHRHPGRPWSVEDLAREAGLSRAAFAKRFAS
HHHHHCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHH
TVGQPPLAYLTWWRMTTAARLLRESKAPLSAVAERCGYRSEFAFAKAFKREFGAAPGRYR
HHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
RQGQPGQDLSEK
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1332944 [H]