Click here to switch to the map view.

The map label for this gene is frc [H]

Identifier: 158316468

GI number: 158316468

Start: 5618508

End: 5619728

Strand: Reverse

Name: frc [H]

Synonym: Franean1_4703

Alternate gene names: 158316468

Gene position: 5619728-5618508 (Counterclockwise)

Preceding gene: 158316470

Following gene: 158316467

Centisome position: 62.57

GC content: 69.53

Gene sequence:

>1221_bases
GTGCCGGATCAGCTCAGGTACGACCTGCTGGCGGGCGTAAAGGTGGTCGAGGTGGCGGCGTGGCTGTTCGCGCCGTCGTG
TGGGGCGATCCTCGCTGACTGGGGCGCCGACGTCATCAAGATCGAGCCGACGCGGAACGGCGGTGATCCTTATCGGGGGT
TCTTCCACACCGGCGCGGTGAACCCGACGATCGAGCTCGCCAACCGGGGCAAACGCAGCGCGGCCGTCGACCTGTCGACA
CCCGCCGGTCACGACGTACTGTTACAGCTGGTTGCGGACGCTGACGTGTTCGTCACCAACCTGCTGCCCGATCCGCGGGG
ACGGCTCGGCGTCGAGATCGCCGACATCCGCGGGGCCAATCCCTCGATCATCTACGTCCGGGCCAGCGGCTACGGCCCTC
GTGGCTCGGATGCCGAGACACCCGGCTTCGACGCCGCGGTGGCGTGGGCCCGCGTCGGCGTCGCCCAGTTCCTCACCCCG
CCGGACGCGCGCCAACCGATCCATCCGCCGGGCGGCATCGGTGACTGCGTCGGGGGGCTCGGCGGGGCCGGCGCTGTCGC
CGCCGCCCTGTTCAAGCGGGAGCGCACGGGCGTCCCATCGGAGATCGACGTCTCGCTGCTCGCCAGCGGCATGTGGATGA
ACGCCACCGTCCTGATGACGGAGGCCAACGCCGGGCCGGAGGGCTCGCTGATGCAGCGGGTCGACCGCCGGACGGTCCGC
AACCCGCTGTCCAACAGCTACCAGACAAAGGACGGCCGCTGGCTGTCGATGGTCGTCATCCAACCAGACCCCCACTGGCG
CAGCTTCTGCGAGCACATCGGCCGGCCAGAACTGGCCGACGACCCGCGTTTCGTGGACTTCCACGCTCGCATGACGAACA
ACACCGAGCTTGTCGGCCTGCTCGACGAGGTATTCGCGTCCCGCGCCATGGCCGAGTGGCGCGAGGCGTTGCGCACGTTC
TCCGGGGTGTGGGACGTGCTCCAGACGCCTGCCGAGGTCGTGCACGACCCGCAGGTGTTAGCCAACGGCTACCTCATCCC
GGGGGAGGATCCCGGCCCGCCACTGTCGGTTGTGGCGTCGCCGGCGCAGTTTGACGGGCGGCCACTCACCGCGGTGCGGC
GGGCGCCCGAGCACGGCCAGCACACGGAGGAGATCCTCCTGGCATCTGGCTATTCGTGGGACGACATCACCGCCCTCAAG
GAGCAGGGCGCCATCATCTGA

Upstream 100 bases:

>100_bases
GGGCATCGTCACAGGTGTATACAACTACTGAGGCAATGTTGTATACAAGTCTCATGCCGAAGACCGGATGGGGCGACACC
GAAGACGGGAGGACGAGCCC

Downstream 100 bases:

>100_bases
GAGGGGAACGCACCATGGATTACAAGGTCATCTCGGCGGACAACCACATCATCGAGGCGCCGCACACGTTCACCACCTAT
CTGCCGAAGGAGTACCGGGA

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: Formyl-CoA transferase [H]

Number of amino acids: Translated: 406; Mature: 405

Protein sequence:

>406_residues
MPDQLRYDLLAGVKVVEVAAWLFAPSCGAILADWGADVIKIEPTRNGGDPYRGFFHTGAVNPTIELANRGKRSAAVDLST
PAGHDVLLQLVADADVFVTNLLPDPRGRLGVEIADIRGANPSIIYVRASGYGPRGSDAETPGFDAAVAWARVGVAQFLTP
PDARQPIHPPGGIGDCVGGLGGAGAVAAALFKRERTGVPSEIDVSLLASGMWMNATVLMTEANAGPEGSLMQRVDRRTVR
NPLSNSYQTKDGRWLSMVVIQPDPHWRSFCEHIGRPELADDPRFVDFHARMTNNTELVGLLDEVFASRAMAEWREALRTF
SGVWDVLQTPAEVVHDPQVLANGYLIPGEDPGPPLSVVASPAQFDGRPLTAVRRAPEHGQHTEEILLASGYSWDDITALK
EQGAII

Sequences:

>Translated_406_residues
MPDQLRYDLLAGVKVVEVAAWLFAPSCGAILADWGADVIKIEPTRNGGDPYRGFFHTGAVNPTIELANRGKRSAAVDLST
PAGHDVLLQLVADADVFVTNLLPDPRGRLGVEIADIRGANPSIIYVRASGYGPRGSDAETPGFDAAVAWARVGVAQFLTP
PDARQPIHPPGGIGDCVGGLGGAGAVAAALFKRERTGVPSEIDVSLLASGMWMNATVLMTEANAGPEGSLMQRVDRRTVR
NPLSNSYQTKDGRWLSMVVIQPDPHWRSFCEHIGRPELADDPRFVDFHARMTNNTELVGLLDEVFASRAMAEWREALRTF
SGVWDVLQTPAEVVHDPQVLANGYLIPGEDPGPPLSVVASPAQFDGRPLTAVRRAPEHGQHTEEILLASGYSWDDITALK
EQGAII
>Mature_405_residues
PDQLRYDLLAGVKVVEVAAWLFAPSCGAILADWGADVIKIEPTRNGGDPYRGFFHTGAVNPTIELANRGKRSAAVDLSTP
AGHDVLLQLVADADVFVTNLLPDPRGRLGVEIADIRGANPSIIYVRASGYGPRGSDAETPGFDAAVAWARVGVAQFLTPP
DARQPIHPPGGIGDCVGGLGGAGAVAAALFKRERTGVPSEIDVSLLASGMWMNATVLMTEANAGPEGSLMQRVDRRTVRN
PLSNSYQTKDGRWLSMVVIQPDPHWRSFCEHIGRPELADDPRFVDFHARMTNNTELVGLLDEVFASRAMAEWREALRTFS
GVWDVLQTPAEVVHDPQVLANGYLIPGEDPGPPLSVVASPAQFDGRPLTAVRRAPEHGQHTEEILLASGYSWDDITALKE
QGAII

Specific function: Catalyzes the transfer of the CoA moiety from formyl-CoA to oxalate [H]

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=391, Percent_Identity=30.1790281329923, Blast_Score=145, Evalue=1e-34,
Organism=Homo sapiens, GI300863124, Length=417, Percent_Identity=28.7769784172662, Blast_Score=132, Evalue=7e-31,
Organism=Homo sapiens, GI266456254, Length=412, Percent_Identity=29.3689320388349, Blast_Score=112, Evalue=6e-25,
Organism=Homo sapiens, GI42794625, Length=412, Percent_Identity=29.3689320388349, Blast_Score=112, Evalue=7e-25,
Organism=Homo sapiens, GI300863126, Length=387, Percent_Identity=27.1317829457364, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI13376042, Length=417, Percent_Identity=25.8992805755396, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI266458393, Length=268, Percent_Identity=30.9701492537313, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI266458397, Length=268, Percent_Identity=30.9701492537313, Blast_Score=84, Evalue=3e-16,
Organism=Escherichia coli, GI87082093, Length=351, Percent_Identity=23.6467236467236, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1788717, Length=426, Percent_Identity=25.8215962441315, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1786222, Length=415, Percent_Identity=23.855421686747, Blast_Score=70, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI115535051, Length=340, Percent_Identity=26.1764705882353, Blast_Score=86, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI32564160, Length=274, Percent_Identity=25.9124087591241, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24648431, Length=406, Percent_Identity=29.5566502463054, Blast_Score=137, Evalue=1e-32,
Organism=Drosophila melanogaster, GI24585488, Length=359, Percent_Identity=27.0194986072423, Blast_Score=103, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673
- InterPro:   IPR017659 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: =2.8.3.16 [H]

Molecular weight: Translated: 43628; Mature: 43497

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDQLRYDLLAGVKVVEVAAWLFAPSCGAILADWGADVIKIEPTRNGGDPYRGFFHTGAV
CCCHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHCCCCEEEEECCCCCCCCCCCEEECCCC
NPTIELANRGKRSAAVDLSTPAGHDVLLQLVADADVFVTNLLPDPRGRLGVEIADIRGAN
CCHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCHHEEECCCCCCCCCCCEEEEECCCCC
PSIIYVRASGYGPRGSDAETPGFDAAVAWARVGVAQFLTPPDARQPIHPPGGIGDCVGGL
CCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCC
GGAGAVAAALFKRERTGVPSEIDVSLLASGMWMNATVLMTEANAGPEGSLMQRVDRRTVR
CCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHH
NPLSNSYQTKDGRWLSMVVIQPDPHWRSFCEHIGRPELADDPRFVDFHARMTNNTELVGL
HHHCCCCCCCCCCEEEEEEECCCCCHHHHHHHCCCCCCCCCCCEEEEEEEECCCCHHHHH
LDEVFASRAMAEWREALRTFSGVWDVLQTPAEVVHDPQVLANGYLIPGEDPGPPLSVVAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHCCEECCCCCCCCCHHEEEC
PAQFDGRPLTAVRRAPEHGQHTEEILLASGYSWDDITALKEQGAII
CHHCCCCCHHHHHCCCCCCCCHHHEEEECCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
PDQLRYDLLAGVKVVEVAAWLFAPSCGAILADWGADVIKIEPTRNGGDPYRGFFHTGAV
CCHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHCCCCEEEEECCCCCCCCCCCEEECCCC
NPTIELANRGKRSAAVDLSTPAGHDVLLQLVADADVFVTNLLPDPRGRLGVEIADIRGAN
CCHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCHHEEECCCCCCCCCCCEEEEECCCCC
PSIIYVRASGYGPRGSDAETPGFDAAVAWARVGVAQFLTPPDARQPIHPPGGIGDCVGGL
CCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCC
GGAGAVAAALFKRERTGVPSEIDVSLLASGMWMNATVLMTEANAGPEGSLMQRVDRRTVR
CCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHH
NPLSNSYQTKDGRWLSMVVIQPDPHWRSFCEHIGRPELADDPRFVDFHARMTNNTELVGL
HHHCCCCCCCCCCEEEEEEECCCCCHHHHHHHCCCCCCCCCCCEEEEEEEECCCCHHHHH
LDEVFASRAMAEWREALRTFSGVWDVLQTPAEVVHDPQVLANGYLIPGEDPGPPLSVVAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHCCEECCCCCCCCCHHEEEC
PAQFDGRPLTAVRRAPEHGQHTEEILLASGYSWDDITALKEQGAII
CHHCCCCCHHHHHCCCCCCCCHHHEEEECCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA