| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is cutL [H]
Identifier: 158316464
GI number: 158316464
Start: 5613718
End: 5616051
Strand: Reverse
Name: cutL [H]
Synonym: Franean1_4699
Alternate gene names: 158316464
Gene position: 5616051-5613718 (Counterclockwise)
Preceding gene: 158316465
Following gene: 158316463
Centisome position: 62.53
GC content: 68.51
Gene sequence:
>2334_bases ATGAGATTCGTCGGCGAGCGGGTGGCAAGAGTCGAGGACCCGCGGTTGTTGACGGGCCGTGGAAAATTCGTCGACGACGT GACGTTGCCGCGCATGCTCCATGTCGCTTTCGTACGCAGCCCCATGGCCCACGCTCGGATCAACAGCATCGACACCACGG CGGCGCGAGCGGTGCCCGGCGTCGTGGCGGTGTTCACCGGCGCCGACCTGGTAGCCGGCTGCAATCCCCTCACGGGATTG CGCAACGGACCGAACTGGCCGACGTTCCGCGCCTTGCCCACGGACAAGGCAAGGTTCGTCGGCGATCCGCTCGTGATGGT CGTGGCCGACAGCCGGTACATAGCCGAGGACGCGTGCGAGCTGGTCGACATCGACTACGAGCCGCTTCCGGCGGTGACCG GTTACGAAGCTGCCCTCGACCCCGCATCACCGGCCATCTTCGACGAACTCGGCGACAACATCGTGGCGACGAGCCCACCC GTCACCCTGGGTGACATCGATGCCGCCTTCGCCGAGGCCGACCAGGTGGTGCGGGCGACCTTGCGCCAACACCGTGTCGC CAACGTCCCCCTGGAAACGAGGGGCGGGATCGCCGACTACGACCCGGCCTCGGGGGAGCTGACCTTCATCGCCTCGACCC AGACCCCGCATGGCCTGCGGCAGGCACTGGCCCAGGCTCTCGACCATCCCCTGGAACGGCTGCGGGTGCTTGCGGGCGAC GTGGGTGGTGGCTTCGGCCTCAAGGGTGTGGTGGGGCGCGAGGACTTCTGCATCGCGCTGGCCAGCAAGCGGCTCGGCCG TCCGGTCAAATGGGTGGAGGACCGCAACGAGCACCTTCTCGCGTCCGGCCACGCCCGCGAAGAGAAGATCGACGCGGAAC TCGCGCTGAAGGCCGACGGCACGCTGCTCGGGTTGAAGGTGAAGCTCGTCCTGGACGGCGGCGCCTACCCGGCGGTGCCG TTCAGCTGCACGATCTACCCTGAGATGATCTGTACGTCGCTGCCTGGCCCTTACCACATCAAAGCCTACAAATATGAAAG CGCTGTCGTCGCCAGCAACAAGGCTACGTACGTCGCCTACCGGGGCCCGTGGGAGATGGAGGTGTGGACGCGGGAACGGC TGCTTGACATCGCGGCCCACGAGCTGGGGCTCGACCCCGCCGACATCCGGCGCCGGAACCTGGTGGCCGGCGAGCCCGGC GACCAGATCATCACTGGCCGAGGCCTGGAGGGCATCACATCACGCCGCTCCCTTGAGCAGGCCCTGGACCTCGTCGATTA CGACGGGTTCCGGAAGGAGCAGGTAGCCGCGCGTGCCGCGGGCCGCTACCTCGGCATCGGGTTCGCCATCTTCATGGAAG CGGCGCCCGGGCCGCCGGAGTTGCGGGGCAAAGGTGCGCCCTTCGGCGGCGAACAGGCGAAGGCGGCGCTCCAGGCCGAC GGCCATCTCCTCGTGACCACCGGTCAGGCCCCGCACGGCCAGGGCCACGAGACGACGCTCGCCCAGGTCGCGGCCGACCA GATGGGTATTCCGCTGGACCACGTGCGGGTGGTCCACGGCGACACGCGTCAGACCCCGTTCAACCTCATCGGCACCGGCG GCAGCCGGGCCGGCACGTGGGCGACGGGTGCCGTGATCGTGACGACCAGGCGGCTGAAGGAAAAGGTGCTGGACATCGCG GCCCACCGGCTGCAGATCGATCCTGGCGACCTCGACATCGTCGACGGGATGGTGACGCCGAAGGGGGCGCCGGACAAGGC GATCCCGCTGGCCGACGTGGCGAAGCTGGCGATGATGGCGCCCATGTTCCTCCCGCCGGGCACCGACGTGTCCTTGACGG CGCAGGAGCGCTTCGACGGGTCCGCCGTCACCAGCAGCGGTTGGTCGGGCGGCGCACATGTCTGCACCGTCGAGGTGGAC ATCGCCACGGGGCAGGTCCGGATACTTCGTTACGTCGTCGTCGAGGACTGCGGACGGGTGGTCAACCCGGCGATCGTCGA GGGCCAGATCTGCGGCGGTATCGCGCAGGGCATCGGCGAGGTGCTGTACGAGAACGCCGCCTACGACGCCGACGGCAACT TCCTCGCCGCCACGTTCATGGACTACCTGCTCCCGACCGCCGCCGAGATCCCGCACATCGAGATCGAACACATCGATTCC GCAGGCCTCGGCGACTTCGACTTCCACGGTGTCGGCGAAGGCGGGGCGCTGGCCGCCCCGGCGACGCTGACCAACGCCGT GGCGGACGCTCTGCTGCCCTTCGGAGCCCGGGTGGTCGACCAGTACCTTCCCCCAGCGAAGATCCTCGAGCTCGCGGGCG TGATCTCTGCCTGA
Upstream 100 bases:
>100_bases CCGTTCTGGTCCCCGGCTGCGGCTGCGGACTCGTAGAGCGAGGCAAAAGGTCGGCGCCGGCGTTCGGTGGCGCGGCGGTA CCTGAGCCGGTGTTGTACCG
Downstream 100 bases:
>100_bases CACTCGTCCACCAGTTGCCCGAAACAGTCCGCAGCCATAGCGGAAGGTGGCCTTCGTGAGCCTCCGTACCACGTCCCCGG CACTGTCCTACCGTTGCGCG
Product: carbon-monoxide dehydrogenase (acceptor)
Products: NA
Alternate protein names: CO dehydrogenase subunit L; CO-DH L [H]
Number of amino acids: Translated: 777; Mature: 777
Protein sequence:
>777_residues MRFVGERVARVEDPRLLTGRGKFVDDVTLPRMLHVAFVRSPMAHARINSIDTTAARAVPGVVAVFTGADLVAGCNPLTGL RNGPNWPTFRALPTDKARFVGDPLVMVVADSRYIAEDACELVDIDYEPLPAVTGYEAALDPASPAIFDELGDNIVATSPP VTLGDIDAAFAEADQVVRATLRQHRVANVPLETRGGIADYDPASGELTFIASTQTPHGLRQALAQALDHPLERLRVLAGD VGGGFGLKGVVGREDFCIALASKRLGRPVKWVEDRNEHLLASGHAREEKIDAELALKADGTLLGLKVKLVLDGGAYPAVP FSCTIYPEMICTSLPGPYHIKAYKYESAVVASNKATYVAYRGPWEMEVWTRERLLDIAAHELGLDPADIRRRNLVAGEPG DQIITGRGLEGITSRRSLEQALDLVDYDGFRKEQVAARAAGRYLGIGFAIFMEAAPGPPELRGKGAPFGGEQAKAALQAD GHLLVTTGQAPHGQGHETTLAQVAADQMGIPLDHVRVVHGDTRQTPFNLIGTGGSRAGTWATGAVIVTTRRLKEKVLDIA AHRLQIDPGDLDIVDGMVTPKGAPDKAIPLADVAKLAMMAPMFLPPGTDVSLTAQERFDGSAVTSSGWSGGAHVCTVEVD IATGQVRILRYVVVEDCGRVVNPAIVEGQICGGIAQGIGEVLYENAAYDADGNFLAATFMDYLLPTAAEIPHIEIEHIDS AGLGDFDFHGVGEGGALAAPATLTNAVADALLPFGARVVDQYLPPAKILELAGVISA
Sequences:
>Translated_777_residues MRFVGERVARVEDPRLLTGRGKFVDDVTLPRMLHVAFVRSPMAHARINSIDTTAARAVPGVVAVFTGADLVAGCNPLTGL RNGPNWPTFRALPTDKARFVGDPLVMVVADSRYIAEDACELVDIDYEPLPAVTGYEAALDPASPAIFDELGDNIVATSPP VTLGDIDAAFAEADQVVRATLRQHRVANVPLETRGGIADYDPASGELTFIASTQTPHGLRQALAQALDHPLERLRVLAGD VGGGFGLKGVVGREDFCIALASKRLGRPVKWVEDRNEHLLASGHAREEKIDAELALKADGTLLGLKVKLVLDGGAYPAVP FSCTIYPEMICTSLPGPYHIKAYKYESAVVASNKATYVAYRGPWEMEVWTRERLLDIAAHELGLDPADIRRRNLVAGEPG DQIITGRGLEGITSRRSLEQALDLVDYDGFRKEQVAARAAGRYLGIGFAIFMEAAPGPPELRGKGAPFGGEQAKAALQAD GHLLVTTGQAPHGQGHETTLAQVAADQMGIPLDHVRVVHGDTRQTPFNLIGTGGSRAGTWATGAVIVTTRRLKEKVLDIA AHRLQIDPGDLDIVDGMVTPKGAPDKAIPLADVAKLAMMAPMFLPPGTDVSLTAQERFDGSAVTSSGWSGGAHVCTVEVD IATGQVRILRYVVVEDCGRVVNPAIVEGQICGGIAQGIGEVLYENAAYDADGNFLAATFMDYLLPTAAEIPHIEIEHIDS AGLGDFDFHGVGEGGALAAPATLTNAVADALLPFGARVVDQYLPPAKILELAGVISA >Mature_777_residues MRFVGERVARVEDPRLLTGRGKFVDDVTLPRMLHVAFVRSPMAHARINSIDTTAARAVPGVVAVFTGADLVAGCNPLTGL RNGPNWPTFRALPTDKARFVGDPLVMVVADSRYIAEDACELVDIDYEPLPAVTGYEAALDPASPAIFDELGDNIVATSPP VTLGDIDAAFAEADQVVRATLRQHRVANVPLETRGGIADYDPASGELTFIASTQTPHGLRQALAQALDHPLERLRVLAGD VGGGFGLKGVVGREDFCIALASKRLGRPVKWVEDRNEHLLASGHAREEKIDAELALKADGTLLGLKVKLVLDGGAYPAVP FSCTIYPEMICTSLPGPYHIKAYKYESAVVASNKATYVAYRGPWEMEVWTRERLLDIAAHELGLDPADIRRRNLVAGEPG DQIITGRGLEGITSRRSLEQALDLVDYDGFRKEQVAARAAGRYLGIGFAIFMEAAPGPPELRGKGAPFGGEQAKAALQAD GHLLVTTGQAPHGQGHETTLAQVAADQMGIPLDHVRVVHGDTRQTPFNLIGTGGSRAGTWATGAVIVTTRRLKEKVLDIA AHRLQIDPGDLDIVDGMVTPKGAPDKAIPLADVAKLAMMAPMFLPPGTDVSLTAQERFDGSAVTSSGWSGGAHVCTVEVD IATGQVRILRYVVVEDCGRVVNPAIVEGQICGGIAQGIGEVLYENAAYDADGNFLAATFMDYLLPTAAEIPHIEIEHIDS AGLGDFDFHGVGEGGALAAPATLTNAVADALLPFGARVVDQYLPPAKILELAGVISA
Specific function: Catalyzes the oxidation of carbon monoxide to carbon dioxide [H]
COG id: COG1529
COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI91823271, Length=722, Percent_Identity=27.0083102493075, Blast_Score=169, Evalue=9e-42, Organism=Homo sapiens, GI71773480, Length=761, Percent_Identity=24.0473061760841, Blast_Score=132, Evalue=1e-30, Organism=Escherichia coli, GI1789230, Length=787, Percent_Identity=30.7496823379924, Blast_Score=263, Evalue=3e-71, Organism=Escherichia coli, GI1789246, Length=829, Percent_Identity=25.8142340168878, Blast_Score=189, Evalue=6e-49, Organism=Escherichia coli, GI1786478, Length=796, Percent_Identity=25.7537688442211, Blast_Score=117, Evalue=2e-27, Organism=Caenorhabditis elegans, GI17540638, Length=755, Percent_Identity=26.0927152317881, Blast_Score=174, Evalue=2e-43, Organism=Caenorhabditis elegans, GI17539860, Length=752, Percent_Identity=23.936170212766, Blast_Score=125, Evalue=1e-28, Organism=Caenorhabditis elegans, GI32566215, Length=741, Percent_Identity=22.1322537112011, Blast_Score=110, Evalue=2e-24, Organism=Drosophila melanogaster, GI17737937, Length=708, Percent_Identity=26.6949152542373, Blast_Score=168, Evalue=2e-41, Organism=Drosophila melanogaster, GI24647199, Length=719, Percent_Identity=23.643949930459, Blast_Score=129, Evalue=7e-30, Organism=Drosophila melanogaster, GI24647193, Length=711, Percent_Identity=24.6132208157525, Blast_Score=128, Evalue=2e-29, Organism=Drosophila melanogaster, GI24647195, Length=779, Percent_Identity=22.8498074454429, Blast_Score=113, Evalue=5e-25, Organism=Drosophila melanogaster, GI24647197, Length=765, Percent_Identity=22.8758169934641, Blast_Score=112, Evalue=1e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000674 - InterPro: IPR008274 - InterPro: IPR012780 [H]
Pfam domain/function: PF01315 Ald_Xan_dh_C; PF02738 Ald_Xan_dh_C2 [H]
EC number: =1.2.99.2 [H]
Molecular weight: Translated: 82407; Mature: 82407
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: PS00070 ALDEHYDE_DEHYDR_CYS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFVGERVARVEDPRLLTGRGKFVDDVTLPRMLHVAFVRSPMAHARINSIDTTAARAVPG CCCHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHCCC VVAVFTGADLVAGCNPLTGLRNGPNWPTFRALPTDKARFVGDPLVMVVADSRYIAEDACE EEEEEECCHHHHCCCCCCCCCCCCCCCCEECCCCCCHHHCCCCEEEEEECCCHHHHHHHH LVDIDYEPLPAVTGYEAALDPASPAIFDELGDNIVATSPPVTLGDIDAAFAEADQVVRAT EEECCCCCCCCCCCCHHCCCCCCCHHHHHHCCCEEECCCCCEECCCHHHHHHHHHHHHHH LRQHRVANVPLETRGGIADYDPASGELTFIASTQTPHGLRQALAQALDHPLERLRVLAGD HHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC VGGGFGLKGVVGREDFCIALASKRLGRPVKWVEDRNEHLLASGHAREEKIDAELALKADG CCCCCCCCCCCCCCCHHEEEHHHHHCCCCHHHCCCCCEEEECCCCCHHHCCCEEEEECCC TLLGLKVKLVLDGGAYPAVPFSCTIYPEMICTSLPGPYHIKAYKYESAVVASNKATYVAY EEEEEEEEEEECCCCCCCCCEEEEECHHHHHHCCCCCEEEEEEEECCEEEECCCEEEEEE RGPWEMEVWTRERLLDIAAHELGLDPADIRRRNLVAGEPGDQIITGRGLEGITSRRSLEQ CCCCCEEHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCEEECCCCCCHHHHHHHHH ALDLVDYDGFRKEQVAARAAGRYLGIGFAIFMEAAPGPPELRGKGAPFGGEQAKAALQAD HHHHHCCCCCCHHHHHHHHCCCHHEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCC GHLLVTTGQAPHGQGHETTLAQVAADQMGIPLDHVRVVHGDTRQTPFNLIGTGGSRAGTW CEEEEEECCCCCCCCCHHHHHHHHHHHHCCCHHHEEEEECCCCCCCCEEEECCCCCCCCE ATGAVIVTTRRLKEKVLDIAAHRLQIDPGDLDIVDGMVTPKGAPDKAIPLADVAKLAMMA ECCEEEEEHHHHHHHHHHHHHHHEECCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHC PMFLPPGTDVSLTAQERFDGSAVTSSGWSGGAHVCTVEVDIATGQVRILRYVVVEDCGRV CCCCCCCCCEEEEHHHCCCCCCEECCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHH VNPAIVEGQICGGIAQGIGEVLYENAAYDADGNFLAATFMDYLLPTAAEIPHIEIEHIDS CCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCC AGLGDFDFHGVGEGGALAAPATLTNAVADALLPFGARVVDQYLPPAKILELAGVISA CCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC >Mature Secondary Structure MRFVGERVARVEDPRLLTGRGKFVDDVTLPRMLHVAFVRSPMAHARINSIDTTAARAVPG CCCHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHCCC VVAVFTGADLVAGCNPLTGLRNGPNWPTFRALPTDKARFVGDPLVMVVADSRYIAEDACE EEEEEECCHHHHCCCCCCCCCCCCCCCCEECCCCCCHHHCCCCEEEEEECCCHHHHHHHH LVDIDYEPLPAVTGYEAALDPASPAIFDELGDNIVATSPPVTLGDIDAAFAEADQVVRAT EEECCCCCCCCCCCCHHCCCCCCCHHHHHHCCCEEECCCCCEECCCHHHHHHHHHHHHHH LRQHRVANVPLETRGGIADYDPASGELTFIASTQTPHGLRQALAQALDHPLERLRVLAGD HHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC VGGGFGLKGVVGREDFCIALASKRLGRPVKWVEDRNEHLLASGHAREEKIDAELALKADG CCCCCCCCCCCCCCCHHEEEHHHHHCCCCHHHCCCCCEEEECCCCCHHHCCCEEEEECCC TLLGLKVKLVLDGGAYPAVPFSCTIYPEMICTSLPGPYHIKAYKYESAVVASNKATYVAY EEEEEEEEEEECCCCCCCCCEEEEECHHHHHHCCCCCEEEEEEEECCEEEECCCEEEEEE RGPWEMEVWTRERLLDIAAHELGLDPADIRRRNLVAGEPGDQIITGRGLEGITSRRSLEQ CCCCCEEHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCEEECCCCCCHHHHHHHHH ALDLVDYDGFRKEQVAARAAGRYLGIGFAIFMEAAPGPPELRGKGAPFGGEQAKAALQAD HHHHHCCCCCCHHHHHHHHCCCHHEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCC GHLLVTTGQAPHGQGHETTLAQVAADQMGIPLDHVRVVHGDTRQTPFNLIGTGGSRAGTW CEEEEEECCCCCCCCCHHHHHHHHHHHHCCCHHHEEEEECCCCCCCCEEEECCCCCCCCE ATGAVIVTTRRLKEKVLDIAAHRLQIDPGDLDIVDGMVTPKGAPDKAIPLADVAKLAMMA ECCEEEEEHHHHHHHHHHHHHHHEECCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHC PMFLPPGTDVSLTAQERFDGSAVTSSGWSGGAHVCTVEVDIATGQVRILRYVVVEDCGRV CCCCCCCCCEEEEHHHCCCCCCEECCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHH VNPAIVEGQICGGIAQGIGEVLYENAAYDADGNFLAATFMDYLLPTAAEIPHIEIEHIDS CCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCC AGLGDFDFHGVGEGGALAAPATLTNAVADALLPFGARVVDQYLPPAKILELAGVISA CCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10482497; 2818128; 10966817; 11076018 [H]