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The map label for this gene is ycdM [C]

Identifier: 158316393

GI number: 158316393

Start: 5514695

End: 5515615

Strand: Reverse

Name: ycdM [C]

Synonym: Franean1_4624

Alternate gene names: 158316393

Gene position: 5515615-5514695 (Counterclockwise)

Preceding gene: 158316395

Following gene: 158316392

Centisome position: 61.41

GC content: 59.17

Gene sequence:

>921_bases
GTGAAACTGGGATTTGCTATGCCGCATCTGCTGAGACTGAAGGCCACATGTCAACCGTGGGAAGCTAAAGTGACGGGTGC
GGACCAGACGCGTCTCGCCAAGTGGGCCGAGAAGCTTGGCTACGCCATGATAAGCGTGCCCGAACACCACATCATTCCGA
AGACCCATGTCGATCTTTCGGGGCCGCACTACTTAAGTGCGTACCCGACCATGGCCTATCTGGCCGGGGCCACGGAAAAG
ATACGAGTTAACTCGTGCATCGCGCTCCTGCCGTTACAGCATCCCGCCATCACCGCCAAGGCTCTCTCGAGCATCGATTG
GCTATCGAGCGGCCGCGTCTCCGTCACGTTCGGGGTGGGCTGGCTGGAAGAGGAGTTTGAAACTCTAGGCGTTCCCTTCC
GTGAACGCGGAGCGATGAGCGAGGAGTACATTCAGGCGATCATCGAGCTCTGGACCAAGGAAGAACCGGCGTTCGAAGGA
AAGTATGTCTCTTTCCGGGACGTCGCGTTCGAGCCCAAGCCCGTCCAGAAACCACACCCACCGGTGTGGTTCGGTGGTGA
CGCCGATGCCGTGCTGAGGCGCACCGCCCGCTACGCTTCGGGCTGGTGGCCATTCCTCACCAAACCCGAGGACATCCCCG
CGAAGATCGACTTTGTCAAGTCGCAGCCCGACTACAACGGCAAGCTTACTGATGTGTTCTACGGCTTCGCCACCACGCGA
GTCGGTGACGGTCATGTTATACAGAAAGACCCACGCGCTCGGGCAGGCATGACCAAACAGGAGATCATAGACCGGCTCTG
CTGGTTCAAGGAGCTGGGCGTGACGATGAGTTCAGTGCCGATCCCCAGCGTCAATCACCTCGAGGACTACCTCGACTACA
CCCAATGGGTGGCGGAAGAGATCATGCCCGTGGTTGCGTAG

Upstream 100 bases:

>100_bases
CTGGAGACCAACGAGGCATACATGCGGGGCATGACCGTAGGCGGCCCACGACGCCAGATGGATGAACAACTGTGATGTAC
CAGGTTGGCGAGGAGAAGAC

Downstream 100 bases:

>100_bases
TGGGGCAAAGCTTGGGACAGGCTTTGCCCCCCCGATGCGCTCGCCGCGGTGCTGCGCGACGGGGACGCAGTGTTCGGTAC
TTATCGGACAATTTGGGTAC

Product: luciferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MKLGFAMPHLLRLKATCQPWEAKVTGADQTRLAKWAEKLGYAMISVPEHHIIPKTHVDLSGPHYLSAYPTMAYLAGATEK
IRVNSCIALLPLQHPAITAKALSSIDWLSSGRVSVTFGVGWLEEEFETLGVPFRERGAMSEEYIQAIIELWTKEEPAFEG
KYVSFRDVAFEPKPVQKPHPPVWFGGDADAVLRRTARYASGWWPFLTKPEDIPAKIDFVKSQPDYNGKLTDVFYGFATTR
VGDGHVIQKDPRARAGMTKQEIIDRLCWFKELGVTMSSVPIPSVNHLEDYLDYTQWVAEEIMPVVA

Sequences:

>Translated_306_residues
MKLGFAMPHLLRLKATCQPWEAKVTGADQTRLAKWAEKLGYAMISVPEHHIIPKTHVDLSGPHYLSAYPTMAYLAGATEK
IRVNSCIALLPLQHPAITAKALSSIDWLSSGRVSVTFGVGWLEEEFETLGVPFRERGAMSEEYIQAIIELWTKEEPAFEG
KYVSFRDVAFEPKPVQKPHPPVWFGGDADAVLRRTARYASGWWPFLTKPEDIPAKIDFVKSQPDYNGKLTDVFYGFATTR
VGDGHVIQKDPRARAGMTKQEIIDRLCWFKELGVTMSSVPIPSVNHLEDYLDYTQWVAEEIMPVVA
>Mature_306_residues
MKLGFAMPHLLRLKATCQPWEAKVTGADQTRLAKWAEKLGYAMISVPEHHIIPKTHVDLSGPHYLSAYPTMAYLAGATEK
IRVNSCIALLPLQHPAITAKALSSIDWLSSGRVSVTFGVGWLEEEFETLGVPFRERGAMSEEYIQAIIELWTKEEPAFEG
KYVSFRDVAFEPKPVQKPHPPVWFGGDADAVLRRTARYASGWWPFLTKPEDIPAKIDFVKSQPDYNGKLTDVFYGFATTR
VGDGHVIQKDPRARAGMTKQEIIDRLCWFKELGVTMSSVPIPSVNHLEDYLDYTQWVAEEIMPVVA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv2161c and Rv3079c [H]

Homologues:

Organism=Escherichia coli, GI1787247, Length=142, Percent_Identity=32.3943661971831, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787166, Length=239, Percent_Identity=23.8493723849372, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019921
- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 34435; Mature: 34435

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLGFAMPHLLRLKATCQPWEAKVTGADQTRLAKWAEKLGYAMISVPEHHIIPKTHVDLS
CCCCCCCHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCC
GPHYLSAYPTMAYLAGATEKIRVNSCIALLPLQHPAITAKALSSIDWLSSGRVSVTFGVG
CCCEEHHCCHHHHHHCCCCEEEECCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCC
WLEEEFETLGVPFRERGAMSEEYIQAIIELWTKEEPAFEGKYVSFRDVAFEPKPVQKPHP
HHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCC
PVWFGGDADAVLRRTARYASGWWPFLTKPEDIPAKIDFVKSQPDYNGKLTDVFYGFATTR
CEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHEEEHHHHEE
VGDGHVIQKDPRARAGMTKQEIIDRLCWFKELGVTMSSVPIPSVNHLEDYLDYTQWVAEE
CCCCCEECCCCCHHHCCCHHHHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHHHHHHHHH
IMPVVA
HHHHCC
>Mature Secondary Structure
MKLGFAMPHLLRLKATCQPWEAKVTGADQTRLAKWAEKLGYAMISVPEHHIIPKTHVDLS
CCCCCCCHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCC
GPHYLSAYPTMAYLAGATEKIRVNSCIALLPLQHPAITAKALSSIDWLSSGRVSVTFGVG
CCCEEHHCCHHHHHHCCCCEEEECCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCC
WLEEEFETLGVPFRERGAMSEEYIQAIIELWTKEEPAFEGKYVSFRDVAFEPKPVQKPHP
HHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCC
PVWFGGDADAVLRRTARYASGWWPFLTKPEDIPAKIDFVKSQPDYNGKLTDVFYGFATTR
CEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHEEEHHHHEE
VGDGHVIQKDPRARAGMTKQEIIDRLCWFKELGVTMSSVPIPSVNHLEDYLDYTQWVAEE
CCCCCEECCCCCHHHCCCHHHHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHHHHHHHHH
IMPVVA
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]