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The map label for this gene is ydfH [C]

Identifier: 158316371

GI number: 158316371

Start: 5482023

End: 5482712

Strand: Reverse

Name: ydfH [C]

Synonym: Franean1_4602

Alternate gene names: 158316371

Gene position: 5482712-5482023 (Counterclockwise)

Preceding gene: 158316375

Following gene: 158316369

Centisome position: 61.04

GC content: 70.58

Gene sequence:

>690_bases
GTGCGATCCCGTCTGCTCGCCTCAGGTCGGCGGCGCTACGGCAACCTCAAGGACGAAGCGGCCGACTTCATCCGGGAGGC
GATCGTCTCCCGTGCGCTGCCGCCACTCAGCAAGATCGATCAGGACGAGGTCGCCGACGCGCTCGGGATCAGCCGGGCCC
CGGTCCGCGAGGCCCTCATCGAACTCGCGCAGAAGGGCTTTGTGGACGCCGTGCCCCGGCGCGGCGCGTTCGTCGCCGAG
GTGACCGTCGAGGACATCGAGGACCACTACGAGGTCGTCGCGCTGGTGTCCGGGATGACGACACGGCGTGCGGTCCGCAA
GCTCACGCCGCTGGAGACCGAGGAACTGGCGCGACTGCACCGTGAGATCGCCACGACCGAGGACGAGGCCCGCCGCAGGA
GCCTCGACCGCCGGTTCTTCCAGATCATCGCCACCGCCGGAAAGTCACCACGGCTCGACGCGATCCTGGAGTTCCTCGGC
GGCGTGCTCCAGGGCAGCCTCTACTACGACTCCCCGGCCTGGGTGGACAACGAGGCCCGGTACCGCGAGCTGTTGCTGGC
CGAGATCCGGGCGGGCGACGTCGTGACGGCGGCGCGGACCAGCGAGGAGCACGTGCGCTCCTGCGCTGCTGTCACCGTGG
AGCACCTGCGGACCCGCGGCTACTGGACGACCCCCCCAGCCGCGCCCTGA

Upstream 100 bases:

>100_bases
TGACGGGGGATGCGGACATGACGGGCGAACGCCCGCGCCGAGGGCGCCTGCCCCGGACGGCCACGTGAGCCTCCCGTGAC
GACACGGGACGCCGACCCGA

Downstream 100 bases:

>100_bases
AGCCAGGCTGTGTCGTGGCATGACGCGGTACGGCGTGACGTGGCTGTGTGATGTCCGGTCTTCGGTGCCGGGCGGGAATG
TCAGGGAAGGTGCCAGTCGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MRSRLLASGRRRYGNLKDEAADFIREAIVSRALPPLSKIDQDEVADALGISRAPVREALIELAQKGFVDAVPRRGAFVAE
VTVEDIEDHYEVVALVSGMTTRRAVRKLTPLETEELARLHREIATTEDEARRRSLDRRFFQIIATAGKSPRLDAILEFLG
GVLQGSLYYDSPAWVDNEARYRELLLAEIRAGDVVTAARTSEEHVRSCAAVTVEHLRTRGYWTTPPAAP

Sequences:

>Translated_229_residues
MRSRLLASGRRRYGNLKDEAADFIREAIVSRALPPLSKIDQDEVADALGISRAPVREALIELAQKGFVDAVPRRGAFVAE
VTVEDIEDHYEVVALVSGMTTRRAVRKLTPLETEELARLHREIATTEDEARRRSLDRRFFQIIATAGKSPRLDAILEFLG
GVLQGSLYYDSPAWVDNEARYRELLLAEIRAGDVVTAARTSEEHVRSCAAVTVEHLRTRGYWTTPPAAP
>Mature_229_residues
MRSRLLASGRRRYGNLKDEAADFIREAIVSRALPPLSKIDQDEVADALGISRAPVREALIELAQKGFVDAVPRRGAFVAE
VTVEDIEDHYEVVALVSGMTTRRAVRKLTPLETEELARLHREIATTEDEARRRSLDRRFFQIIATAGKSPRLDAILEFLG
GVLQGSLYYDSPAWVDNEARYRELLLAEIRAGDVVTAARTSEEHVRSCAAVTVEHLRTRGYWTTPPAAP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25580; Mature: 25580

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSRLLASGRRRYGNLKDEAADFIREAIVSRALPPLSKIDQDEVADALGISRAPVREALI
CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHCCCCCHHHHHHH
ELAQKGFVDAVPRRGAFVAEVTVEDIEDHYEVVALVSGMTTRRAVRKLTPLETEELARLH
HHHHHCHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHH
REIATTEDEARRRSLDRRFFQIIATAGKSPRLDAILEFLGGVLQGSLYYDSPAWVDNEAR
HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEECCCCCCCCHHH
YRELLLAEIRAGDVVTAARTSEEHVRSCAAVTVEHLRTRGYWTTPPAAP
HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MRSRLLASGRRRYGNLKDEAADFIREAIVSRALPPLSKIDQDEVADALGISRAPVREALI
CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHCCCCCHHHHHHH
ELAQKGFVDAVPRRGAFVAEVTVEDIEDHYEVVALVSGMTTRRAVRKLTPLETEELARLH
HHHHHCHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHH
REIATTEDEARRRSLDRRFFQIIATAGKSPRLDAILEFLGGVLQGSLYYDSPAWVDNEAR
HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEECCCCCCCCHHH
YRELLLAEIRAGDVVTAARTSEEHVRSCAAVTVEHLRTRGYWTTPPAAP
HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]