| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is limC [H]
Identifier: 158316224
GI number: 158316224
Start: 5312886
End: 5313707
Strand: Reverse
Name: limC [H]
Synonym: Franean1_4448
Alternate gene names: 158316224
Gene position: 5313707-5312886 (Counterclockwise)
Preceding gene: 158316225
Following gene: 158316223
Centisome position: 59.16
GC content: 68.37
Gene sequence:
>822_bases GTGGGACGTGTCGAAGGCAAGGTCGCGGTAATCACCGGTGCCGCGCGGGGGCTAGGCCGCGCATCCGCGCTGCGGCTGGC CGAGGAGGGGGCCGACATCATCGCGCTTGACCTTGCGGCCGATCCGGGGTTAACCAGCTACGCGATGAGCGGAGCCAATG ACCTCGAATGCACGGCTGAGGCGTTGCGGTCGCTCGGCCGCCGCGTGGTCACCGGATACGCGGACGTCCGGGACCTGGAC GCAGTCGTGGCCTCGATCGAGGCCGGGGTCCGCGAGCTGGGGCGGCTCGATCTGGTTTGCGCCAACGCGGGAATGGTCTC CTACGGCGGCGTGCTTGACCTCACCGAGACGCAGTGGCGGGACCTGCTCGACGTGCACATCACCGGCTCCTGGCACACCG TGCGTGCCTCCGCACCCCATCTCATCGCCGCCGGCGGTGGGTCCATCGTGCTCACCAGTTCAGTGGCGGGGCTGCGGGCC GAGGCCGGCGTCGCCCACTACGTCACGGCTAAGCATGGGCTGGTGGGGCTGATGCGCAACCTGGCTGTCGAGCTCGCTCC ACACGGCATCCGGGCCAACTCCGTGCATCCCACGATGACGAAGACAAGGATGATCACGAACGAGTCGACCCAGGCTCTGA TCGCCTCGGGAGCCGAGGCCGGGATCAGTGCCGAGGACGCCGCTCGAAAGCGCCACCTGCTCGACGTGCCGTGGATCGAG GCTATCGACGTCGCCAACGCCGTGCTCTACCTGCACTCGGACGAAGCGCGCTACATCACCGGAGTCGCACTACCGGTGGA CGCCGGGGCTTGCCTTGTCTGA
Upstream 100 bases:
>100_bases TACGACCAGCTCTTCCCGTGCGGGCCGCGGGCTCTACCGCTCGCCCTGAGGGAAGGCGGGCCGACTAGGCAATCACCCTC ACCAGGAGAGGACGTTCGGC
Downstream 100 bases:
>100_bases CCACTGCGACCCTGTGGGGCTCCGAAATTCGGGTTTCGGCCTGGGAGCTGGTCTTCTGTGGCTGACGTGATCGTCTGGGG GTGTCGTCAGGCGGCGTTGC
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: (4R,6S)-carveol dehydrogenase; CDH; Carveol dehydrogenase [H]
Number of amino acids: Translated: 273; Mature: 272
Protein sequence:
>273_residues MGRVEGKVAVITGAARGLGRASALRLAEEGADIIALDLAADPGLTSYAMSGANDLECTAEALRSLGRRVVTGYADVRDLD AVVASIEAGVRELGRLDLVCANAGMVSYGGVLDLTETQWRDLLDVHITGSWHTVRASAPHLIAAGGGSIVLTSSVAGLRA EAGVAHYVTAKHGLVGLMRNLAVELAPHGIRANSVHPTMTKTRMITNESTQALIASGAEAGISAEDAARKRHLLDVPWIE AIDVANAVLYLHSDEARYITGVALPVDAGACLV
Sequences:
>Translated_273_residues MGRVEGKVAVITGAARGLGRASALRLAEEGADIIALDLAADPGLTSYAMSGANDLECTAEALRSLGRRVVTGYADVRDLD AVVASIEAGVRELGRLDLVCANAGMVSYGGVLDLTETQWRDLLDVHITGSWHTVRASAPHLIAAGGGSIVLTSSVAGLRA EAGVAHYVTAKHGLVGLMRNLAVELAPHGIRANSVHPTMTKTRMITNESTQALIASGAEAGISAEDAARKRHLLDVPWIE AIDVANAVLYLHSDEARYITGVALPVDAGACLV >Mature_272_residues GRVEGKVAVITGAARGLGRASALRLAEEGADIIALDLAADPGLTSYAMSGANDLECTAEALRSLGRRVVTGYADVRDLDA VVASIEAGVRELGRLDLVCANAGMVSYGGVLDLTETQWRDLLDVHITGSWHTVRASAPHLIAAGGGSIVLTSSVAGLRAE AGVAHYVTAKHGLVGLMRNLAVELAPHGIRANSVHPTMTKTRMITNESTQALIASGAEAGISAEDAARKRHLLDVPWIEA IDVANAVLYLHSDEARYITGVALPVDAGACLV
Specific function: Catalyzes the oxidation of carveol to carvone, with a strong stereoselectivity since it efficiently converts only the (6S)-stereoisomers, of which (-)-(4R,6S)-trans-carveol is the better substrate. Displays a broad substrate specificity with a preference
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI4504505, Length=208, Percent_Identity=33.6538461538462, Blast_Score=105, Evalue=6e-23, Organism=Homo sapiens, GI32483357, Length=266, Percent_Identity=30.8270676691729, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI15277342, Length=279, Percent_Identity=30.4659498207885, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI66933014, Length=270, Percent_Identity=29.6296296296296, Blast_Score=88, Evalue=9e-18, Organism=Homo sapiens, GI40254992, Length=268, Percent_Identity=30.5970149253731, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI4758504, Length=246, Percent_Identity=30.8943089430894, Blast_Score=85, Evalue=7e-17, Organism=Homo sapiens, GI126723191, Length=199, Percent_Identity=29.6482412060301, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI10190704, Length=269, Percent_Identity=28.6245353159851, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI31542939, Length=259, Percent_Identity=28.5714285714286, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI126723750, Length=265, Percent_Identity=27.5471698113208, Blast_Score=78, Evalue=8e-15, Organism=Homo sapiens, GI302344755, Length=108, Percent_Identity=35.1851851851852, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI19923817, Length=273, Percent_Identity=26.007326007326, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI40254986, Length=187, Percent_Identity=29.4117647058824, Blast_Score=74, Evalue=9e-14, Organism=Homo sapiens, GI83715985, Length=199, Percent_Identity=32.1608040201005, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI142976729, Length=210, Percent_Identity=25.7142857142857, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI40807363, Length=212, Percent_Identity=28.3018867924528, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI7705925, Length=275, Percent_Identity=27.6363636363636, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI210032110, Length=214, Percent_Identity=26.1682242990654, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI5031737, Length=261, Percent_Identity=27.9693486590038, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI25282469, Length=221, Percent_Identity=28.0542986425339, Blast_Score=67, Evalue=1e-11, Organism=Escherichia coli, GI87082100, Length=273, Percent_Identity=32.967032967033, Blast_Score=133, Evalue=2e-32, Organism=Escherichia coli, GI1789208, Length=271, Percent_Identity=31.7343173431734, Blast_Score=126, Evalue=1e-30, Organism=Escherichia coli, GI1787335, Length=273, Percent_Identity=31.5018315018315, Blast_Score=114, Evalue=7e-27, Organism=Escherichia coli, GI1788459, Length=268, Percent_Identity=29.8507462686567, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1790717, Length=270, Percent_Identity=26.2962962962963, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1787905, Length=270, Percent_Identity=26.2962962962963, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI87082160, Length=269, Percent_Identity=24.5353159851301, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1786812, Length=277, Percent_Identity=26.3537906137184, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI2367365, Length=268, Percent_Identity=28.7313432835821, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI2367175, Length=273, Percent_Identity=28.9377289377289, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1789378, Length=261, Percent_Identity=26.0536398467433, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1787526, Length=279, Percent_Identity=25.8064516129032, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1789057, Length=274, Percent_Identity=27.7372262773723, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1788891, Length=179, Percent_Identity=31.8435754189944, Blast_Score=63, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17568967, Length=209, Percent_Identity=35.8851674641148, Blast_Score=119, Evalue=1e-27, Organism=Caenorhabditis elegans, GI17561402, Length=267, Percent_Identity=29.5880149812734, Blast_Score=111, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17560676, Length=267, Percent_Identity=27.3408239700375, Blast_Score=98, Evalue=5e-21, Organism=Caenorhabditis elegans, GI71994600, Length=271, Percent_Identity=30.6273062730627, Blast_Score=97, Evalue=8e-21, Organism=Caenorhabditis elegans, GI17567345, Length=205, Percent_Identity=28.780487804878, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI71994604, Length=273, Percent_Identity=28.5714285714286, Blast_Score=95, Evalue=5e-20, Organism=Caenorhabditis elegans, GI17555706, Length=265, Percent_Identity=29.811320754717, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI25147288, Length=269, Percent_Identity=28.2527881040892, Blast_Score=90, Evalue=9e-19, Organism=Caenorhabditis elegans, GI17562904, Length=289, Percent_Identity=26.643598615917, Blast_Score=88, Evalue=6e-18, Organism=Caenorhabditis elegans, GI71982365, Length=202, Percent_Identity=31.1881188118812, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17562906, Length=293, Percent_Identity=26.6211604095563, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17562908, Length=286, Percent_Identity=27.972027972028, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17562910, Length=213, Percent_Identity=28.6384976525822, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17560220, Length=289, Percent_Identity=26.643598615917, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17559104, Length=299, Percent_Identity=25.4180602006689, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17544670, Length=289, Percent_Identity=25.2595155709343, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17560150, Length=204, Percent_Identity=26.9607843137255, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17531453, Length=287, Percent_Identity=26.4808362369338, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI72000259, Length=282, Percent_Identity=23.758865248227, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17560332, Length=289, Percent_Identity=27.3356401384083, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17564282, Length=214, Percent_Identity=25.2336448598131, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17538480, Length=293, Percent_Identity=27.9863481228669, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI115534694, Length=268, Percent_Identity=29.4776119402985, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17563726, Length=283, Percent_Identity=24.0282685512367, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17562990, Length=289, Percent_Identity=24.9134948096886, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI193204405, Length=204, Percent_Identity=28.4313725490196, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17508895, Length=202, Percent_Identity=24.7524752475248, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193203117, Length=211, Percent_Identity=24.6445497630332, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17555612, Length=212, Percent_Identity=28.3018867924528, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193203115, Length=210, Percent_Identity=24.7619047619048, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17551412, Length=289, Percent_Identity=26.643598615917, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17538182, Length=258, Percent_Identity=26.3565891472868, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=201, Percent_Identity=35.8208955223881, Blast_Score=113, Evalue=4e-26, Organism=Saccharomyces cerevisiae, GI6324126, Length=269, Percent_Identity=26.7657992565056, Blast_Score=80, Evalue=4e-16, Organism=Drosophila melanogaster, GI18859837, Length=222, Percent_Identity=32.8828828828829, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI23397609, Length=271, Percent_Identity=31.3653136531365, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI24644339, Length=270, Percent_Identity=31.1111111111111, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI21357041, Length=270, Percent_Identity=30, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI21355319, Length=265, Percent_Identity=29.811320754717, Blast_Score=97, Evalue=2e-20, Organism=Drosophila melanogaster, GI28571526, Length=280, Percent_Identity=29.2857142857143, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI17737361, Length=215, Percent_Identity=28.8372093023256, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24639444, Length=276, Percent_Identity=25, Blast_Score=81, Evalue=6e-16, Organism=Drosophila melanogaster, GI281364892, Length=204, Percent_Identity=28.4313725490196, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI21357673, Length=199, Percent_Identity=27.6381909547739, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24643142, Length=264, Percent_Identity=29.1666666666667, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24649181, Length=231, Percent_Identity=26.8398268398268, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24640492, Length=247, Percent_Identity=25.5060728744939, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24644337, Length=181, Percent_Identity=30.3867403314917, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI21355631, Length=188, Percent_Identity=28.1914893617021, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24581726, Length=207, Percent_Identity=25.6038647342995, Blast_Score=68, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 28316; Mature: 28184
Theoretical pI: Translated: 5.80; Mature: 5.80
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRVEGKVAVITGAARGLGRASALRLAEEGADIIALDLAADPGLTSYAMSGANDLECTAE CCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHCCCCCHHHHHH ALRSLGRRVVTGYADVRDLDAVVASIEAGVRELGRLDLVCANAGMVSYGGVLDLTETQWR HHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEECCCEEECCHHHHC DLLDVHITGSWHTVRASAPHLIAAGGGSIVLTSSVAGLRAEAGVAHYVTAKHGLVGLMRN CEEEEEEECCEEEEECCCCEEEEECCCCEEEEECCCCCHHCCCEEEEEHHHHHHHHHHHH LAVELAPHGIRANSVHPTMTKTRMITNESTQALIASGAEAGISAEDAARKRHLLDVPWIE HHHHHCCCCCCCCCCCCCHHHEEEEECCCCHHHHHCCCCCCCCHHHHHHHHCCCCCCCHH AIDVANAVLYLHSDEARYITGVALPVDAGACLV HHHHCCEEEEEECCCCEEEEEEEEECCCCCCCC >Mature Secondary Structure GRVEGKVAVITGAARGLGRASALRLAEEGADIIALDLAADPGLTSYAMSGANDLECTAE CCCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHCCCCCHHHHHH ALRSLGRRVVTGYADVRDLDAVVASIEAGVRELGRLDLVCANAGMVSYGGVLDLTETQWR HHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEECCCEEECCHHHHC DLLDVHITGSWHTVRASAPHLIAAGGGSIVLTSSVAGLRAEAGVAHYVTAKHGLVGLMRN CEEEEEEECCEEEEECCCCEEEEECCCCEEEEECCCCCHHCCCEEEEEHHHHHHHHHHHH LAVELAPHGIRANSVHPTMTKTRMITNESTQALIASGAEAGISAEDAARKRHLLDVPWIE HHHHHCCCCCCCCCCCCCHHHEEEEECCCCHHHHHCCCCCCCCHHHHHHHHCCCCCCCHH AIDVANAVLYLHSDEARYITGVALPVDAGACLV HHHHCCEEEEEECCCCEEEEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10473585 [H]