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The map label for this gene is 158316223

Identifier: 158316223

GI number: 158316223

Start: 5310868

End: 5311395

Strand: Reverse

Name: 158316223

Synonym: Franean1_4446

Alternate gene names: NA

Gene position: 5311395-5310868 (Counterclockwise)

Preceding gene: 158316224

Following gene: 158316222

Centisome position: 59.13

GC content: 70.45

Gene sequence:

>528_bases
GTGCAGCGCTTCACGCCCCTGTTGGTCGACGCGGCCCGGTCGTACCGGCACCGGCCTGGCGGGAGGTGGTTCATCGATGA
GACCTACGTCAAGGTCGCCGGCCGCTGGACCTACCTCTACCGTGCGGTCGACCAGCACAGCCAGGTCATTGACGTCCTGG
CCAGCACCCGCCGCGACCAGGCGGCTGCCCGCCGATTCTTCGTTCGAGCGCTGACGCATGGGCGCCGGCCGGTCAAGGTC
ACTACCGACAAGGCCCCGGTCTACCCGCGGATCCTCGACGAGCTCCTCCCCGAGGCCTGTCACGTCGACGCCGCCCGAGA
GAACAACCGGATCGAAGCCGACCACGGCCGGCTCAAGGCAAGGCTTCGGCCCATGCGCGGTCTGAAACGTCTCCGCTCCG
TCCAGACCGTCAGCGCCGGCCACGCCCTCGTGCAGAACATCCGACGCGGCCACTACGAACTCGCCGCCGCCGCCGACCCA
CGGCCGAGGCTCGCCGCCGCGTCCACCGAACTCGCCGCCGCCGTCTGA

Upstream 100 bases:

>100_bases
GGCCAGGAGAACCCGGGGTGAGGCGCAGCCTGCCCGCCCGACGGAGGAGATCAGCTCAGGCGGCGGTCCGCGTGAAAAGT
GAAGTTCGCTGACCTGTTGC

Downstream 100 bases:

>100_bases
CCGACAGCCGCCCCGGCCGCTGGCATGCACCGCCTTCGCCGAACGCAACAGCGCCCCGCCGGCGACCGCTGCCTCGAGCG
GGTCGCCGCCTGCCTGGCCA

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MQRFTPLLVDAARSYRHRPGGRWFIDETYVKVAGRWTYLYRAVDQHSQVIDVLASTRRDQAAARRFFVRALTHGRRPVKV
TTDKAPVYPRILDELLPEACHVDAARENNRIEADHGRLKARLRPMRGLKRLRSVQTVSAGHALVQNIRRGHYELAAAADP
RPRLAAASTELAAAV

Sequences:

>Translated_175_residues
MQRFTPLLVDAARSYRHRPGGRWFIDETYVKVAGRWTYLYRAVDQHSQVIDVLASTRRDQAAARRFFVRALTHGRRPVKV
TTDKAPVYPRILDELLPEACHVDAARENNRIEADHGRLKARLRPMRGLKRLRSVQTVSAGHALVQNIRRGHYELAAAADP
RPRLAAASTELAAAV
>Mature_175_residues
MQRFTPLLVDAARSYRHRPGGRWFIDETYVKVAGRWTYLYRAVDQHSQVIDVLASTRRDQAAARRFFVRALTHGRRPVKV
TTDKAPVYPRILDELLPEACHVDAARENNRIEADHGRLKARLRPMRGLKRLRSVQTVSAGHALVQNIRRGHYELAAAADP
RPRLAAASTELAAAV

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG3316

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 19853; Mature: 19853

Theoretical pI: Translated: 11.58; Mature: 11.58

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRFTPLLVDAARSYRHRPGGRWFIDETYVKVAGRWTYLYRAVDQHSQVIDVLASTRRDQ
CCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
AAARRFFVRALTHGRRPVKVTTDKAPVYPRILDELLPEACHVDAARENNRIEADHGRLKA
HHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
RLRPMRGLKRLRSVQTVSAGHALVQNIRRGHYELAAAADPRPRLAAASTELAAAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MQRFTPLLVDAARSYRHRPGGRWFIDETYVKVAGRWTYLYRAVDQHSQVIDVLASTRRDQ
CCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
AAARRFFVRALTHGRRPVKVTTDKAPVYPRILDELLPEACHVDAARENNRIEADHGRLKA
HHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
RLRPMRGLKRLRSVQTVSAGHALVQNIRRGHYELAAAADPRPRLAAASTELAAAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2548057; 2365064 [H]