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The map label for this gene is ycgG [H]

Identifier: 158315895

GI number: 158315895

Start: 4893568

End: 4894803

Strand: Reverse

Name: ycgG [H]

Synonym: Franean1_4110

Alternate gene names: 158315895

Gene position: 4894803-4893568 (Counterclockwise)

Preceding gene: 158315896

Following gene: 158315892

Centisome position: 54.5

GC content: 72.17

Gene sequence:

>1236_bases
ATGGCGCGTCCGGCGTCGCCACTGGGCCCACCGATCGAGGTCGTGGAACCGGACCCCGCGGTGGCCGACCTGCTCGGGGT
GCTGCGCCGCCACCTCGGTATGGACCTCGCCTGGCTGGGCCGGGTCGAGGGCGACCTGCTGGTGCTGCAGGTCGTCAACG
GCGACGCGGCCGGTTTCGGCATCGCGCCGGGCAGCACGATCCGCCGCGAGGCGGCCCTGTACGCCCAGGTACTCGCCCAC
GATCAGCCGGTCATCATCCCCGACACCCACCGCGACCCGCGGACCGCCGACGCGGGCACCGTCCAGGTACTGGGTATCGG
GGCGTACGTGGCCACGCCGGTCTACGACAACGACAACGACATCTACGGCATCCTCGGCTGCCTCGCGCACCAGCCCCGCC
CGGAGCTGCGCGAACGCGACGGCCGGTTCCTCAGCCTGCTGGCCGCGTTCCTCAGCGACGCCGTCATCGACCTGCACCGG
GTGTGGGAGACGCGCAGCCGGGTCTCCCGGGTGATCAACGACCTCATCGACGCCGGTGGCCCGCAGATCGTCTTCCAGCC
GGTGGTCGACCTCTCCGATGGCGGCGTGGTGGGAGTCGAGGCGCTGTCACGCTTCCCGGGATCGACCGACGACCCGGAGG
GCTGGTACGCCGTCGCCAGCAGCGTCGGGCTCGGCACGGACCTCGAGCTGACGGCCATCCGGCGCGCGCTGACCGTGATG
TCCGAGCTGCCCAACTCGGTCACCCTCGCCGTGAACGCCTCACCGGCCACCATCACCTCCGGCCTGGTCGGCCTGCTGGC
CCCGTTCCCGGCCTGCGAACGACTGATCGTCGAGATCACCGAGCACGAGTACTTCAGCGCCGACCCGGTGGTCATGCGCG
GCATCCACGCGCTGCGCGCGCTCGGCGCCCAGATCGCGGTGGACGACATCGGCACCGGCTACGCCGGCCTCGAACAGCTC
ATCCACCTGCGGCCCGAGATCGTGAAACTCGACTACCTGATCACCCACGGGATGGACGGCGACCCCGCCCGCCGCGCCGT
CGCCGCCGCCATCGTGGACGTCGCCGCGGAGATCGGCGGCTGCGTGATCGCCGAGGGCATCGAGAACACCGCCGAGCTGC
GGGTCGCCATCGACGCCGGCATCGACTTCGGCCAGGGCTATCTGCTCGGCGCACCCGCCCGCACCGCACGCGCCGCCTGC
ACCCCGGCCGTCGCACTCGCCAACCGCCCCGGCTGA

Upstream 100 bases:

>100_bases
TGGCTCTGAACTCCTCGGGAGCCCTCGGCGGCCCCTCGGCCCGTGCCGCGGTGTGTGTGCCGCACCGGCCTGGGCATGCC
GTAGCGAGGAGGTGGTGCCC

Downstream 100 bases:

>100_bases
CCCCCGCACAACGGGGCGCGAGCCGACGTACGGCGCCGGCGCCGGCGCTCCGGTGTTCCGCGGAACACCGGGTCCGGTTC
AGGGGTGGCCGGTCTCCGGC

Product: GAF sensor-containing diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MARPASPLGPPIEVVEPDPAVADLLGVLRRHLGMDLAWLGRVEGDLLVLQVVNGDAAGFGIAPGSTIRREAALYAQVLAH
DQPVIIPDTHRDPRTADAGTVQVLGIGAYVATPVYDNDNDIYGILGCLAHQPRPELRERDGRFLSLLAAFLSDAVIDLHR
VWETRSRVSRVINDLIDAGGPQIVFQPVVDLSDGGVVGVEALSRFPGSTDDPEGWYAVASSVGLGTDLELTAIRRALTVM
SELPNSVTLAVNASPATITSGLVGLLAPFPACERLIVEITEHEYFSADPVVMRGIHALRALGAQIAVDDIGTGYAGLEQL
IHLRPEIVKLDYLITHGMDGDPARRAVAAAIVDVAAEIGGCVIAEGIENTAELRVAIDAGIDFGQGYLLGAPARTARAAC
TPAVALANRPG

Sequences:

>Translated_411_residues
MARPASPLGPPIEVVEPDPAVADLLGVLRRHLGMDLAWLGRVEGDLLVLQVVNGDAAGFGIAPGSTIRREAALYAQVLAH
DQPVIIPDTHRDPRTADAGTVQVLGIGAYVATPVYDNDNDIYGILGCLAHQPRPELRERDGRFLSLLAAFLSDAVIDLHR
VWETRSRVSRVINDLIDAGGPQIVFQPVVDLSDGGVVGVEALSRFPGSTDDPEGWYAVASSVGLGTDLELTAIRRALTVM
SELPNSVTLAVNASPATITSGLVGLLAPFPACERLIVEITEHEYFSADPVVMRGIHALRALGAQIAVDDIGTGYAGLEQL
IHLRPEIVKLDYLITHGMDGDPARRAVAAAIVDVAAEIGGCVIAEGIENTAELRVAIDAGIDFGQGYLLGAPARTARAAC
TPAVALANRPG
>Mature_410_residues
ARPASPLGPPIEVVEPDPAVADLLGVLRRHLGMDLAWLGRVEGDLLVLQVVNGDAAGFGIAPGSTIRREAALYAQVLAHD
QPVIIPDTHRDPRTADAGTVQVLGIGAYVATPVYDNDNDIYGILGCLAHQPRPELRERDGRFLSLLAAFLSDAVIDLHRV
WETRSRVSRVINDLIDAGGPQIVFQPVVDLSDGGVVGVEALSRFPGSTDDPEGWYAVASSVGLGTDLELTAIRRALTVMS
ELPNSVTLAVNASPATITSGLVGLLAPFPACERLIVEITEHEYFSADPVVMRGIHALRALGAQIAVDDIGTGYAGLEQLI
HLRPEIVKLDYLITHGMDGDPARRAVAAAIVDVAAEIGGCVIAEGIENTAELRVAIDAGIDFGQGYLLGAPARTARAACT
PAVALANRPG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Potential). Note=Found associated with the RNA degradosome [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

Organism=Escherichia coli, GI87081845, Length=258, Percent_Identity=27.1317829457364, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1788849, Length=305, Percent_Identity=27.2131147540984, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI87081743, Length=235, Percent_Identity=27.6595744680851, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI87082096, Length=226, Percent_Identity=25.2212389380531, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI226510982, Length=227, Percent_Identity=30.8370044052863, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787055, Length=279, Percent_Identity=25.8064516129032, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790496, Length=224, Percent_Identity=25, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787541, Length=168, Percent_Identity=32.7380952380952, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1788502, Length=242, Percent_Identity=26.8595041322314, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87081921, Length=388, Percent_Identity=23.1958762886598, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI87081980, Length=244, Percent_Identity=24.1803278688525, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001633 [H]

Pfam domain/function: PF00563 EAL [H]

EC number: NA

Molecular weight: Translated: 43238; Mature: 43107

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARPASPLGPPIEVVEPDPAVADLLGVLRRHLGMDLAWLGRVEGDLLVLQVVNGDAAGFG
CCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEEECCCCCCCC
IAPGSTIRREAALYAQVLAHDQPVIIPDTHRDPRTADAGTVQVLGIGAYVATPVYDNDND
CCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEEEECCEEEECEECCCCC
IYGILGCLAHQPRPELRERDGRFLSLLAAFLSDAVIDLHRVWETRSRVSRVINDLIDAGG
HHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PQIVFQPVVDLSDGGVVGVEALSRFPGSTDDPEGWYAVASSVGLGTDLELTAIRRALTVM
CEEEEEECEECCCCCEEHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHH
SELPNSVTLAVNASPATITSGLVGLLAPFPACERLIVEITEHEYFSADPVVMRGIHALRA
HHCCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
LGAQIAVDDIGTGYAGLEQLIHLRPEIVKLDYLITHGMDGDPARRAVAAAIVDVAAEIGG
HCCEEEECCCCCCHHHHHHHHHCCCHHEEEEEHEECCCCCCHHHHHHHHHHHHHHHHHCC
CVIAEGIENTAELRVAIDAGIDFGQGYLLGAPARTARAACTPAVALANRPG
EEEECCCCCCEEEEEEEECCCCCCCCEEECCCCHHHHHHCCHHHHHCCCCC
>Mature Secondary Structure 
ARPASPLGPPIEVVEPDPAVADLLGVLRRHLGMDLAWLGRVEGDLLVLQVVNGDAAGFG
CCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEEECCCCCCCC
IAPGSTIRREAALYAQVLAHDQPVIIPDTHRDPRTADAGTVQVLGIGAYVATPVYDNDND
CCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEEEEEECCEEEECEECCCCC
IYGILGCLAHQPRPELRERDGRFLSLLAAFLSDAVIDLHRVWETRSRVSRVINDLIDAGG
HHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PQIVFQPVVDLSDGGVVGVEALSRFPGSTDDPEGWYAVASSVGLGTDLELTAIRRALTVM
CEEEEEECEECCCCCEEHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHH
SELPNSVTLAVNASPATITSGLVGLLAPFPACERLIVEITEHEYFSADPVVMRGIHALRA
HHCCCCEEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
LGAQIAVDDIGTGYAGLEQLIHLRPEIVKLDYLITHGMDGDPARRAVAAAIVDVAAEIGG
HCCEEEECCCCCCHHHHHHHHHCCCHHEEEEEHEECCCCCCHHHHHHHHHHHHHHHHHCC
CVIAEGIENTAELRVAIDAGIDFGQGYLLGAPARTARAACTPAVALANRPG
EEEECCCCCCEEEEEEEECCCCCCCCEEECCCCHHHHHHCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]