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The map label for this gene is 158315859

Identifier: 158315859

GI number: 158315859

Start: 4856895

End: 4857404

Strand: Reverse

Name: 158315859

Synonym: Franean1_4074

Alternate gene names: NA

Gene position: 4857404-4856895 (Counterclockwise)

Preceding gene: 158315862

Following gene: 158315858

Centisome position: 54.08

GC content: 75.49

Gene sequence:

>510_bases
GTGGACGACCCCGGGGCCGTGTTCGTGCGTGCCGTGCACGCCGAGCACGGGGCGGCACTGCTCGCCTTCACCACCCGGCT
GACCGGTGACCGCGGCCGGGCCGAGGACGTCGTGCAGGAGACGATGCTGCGGGCCTGGCGGCAGGCGCCGAAGCTCGGCG
CGGACGACCGGCCGCTGCGCCCGTGGCTGTTCACCGTCGCGGCCCGGATCGTCGTGGACGAGCAGCGCGCCCGCCGGGCC
CGCCCGGCCGAACTGCCCGGCGACGTCCTGGCGTCGCTGCCCGCCGGCGACGACCTGGAACGGGCGATGGAAAGCTGGCA
GGTCGCGGAGGCGTTCCGCACACTCAGCCTGGAACACCGCGCCGCGCTGGTCGAGACGTACTTCCTCGGCCGCTCGGTGG
CCGAGGCGGCGGCGGCGCTGGATATTCCGGAGGGCACGGTGAAGTCCCGGGTCTACTACGGCCTGCGCGCGCTGCGGCTG
GCGCTGGAGGAGCAGGGGTGGGCGCCGTGA

Upstream 100 bases:

>100_bases
GTGACCGCTGTCACCCGTCCGACAGCGCGGCCGCTGAACCGAACGGCCGTTCGGCCCGTGAAGGGGGGATGTGGGACTGC
GCCGCGGCGGCCGGCCCGGG

Downstream 100 bases:

>100_bases
CCGACACCTGCTCGGCGCTGCGCGTCGCGCTCGGCTGCTACGTGCTCGGCGCGCTCGCCCCCGGAGAACGCGCCGCAGTG
GAGACTCATCTGGACGGATG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor SigL; ECF Subfamily RNA Polymerase Sigma-24 Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor RpoE; Sigma-70 Family RNA Polymerase; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma Factor SigY; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase; AlteRNAtive RNA Polymerase Sigma Factor SigL; ECF-Family Protein Sigma Factor H; RNA Polymerase Sigma Factor SigK; Sigma-70 Region 2 Domain-Containing Protein; DNA-Directed RNA Polymerase Sigma Subunit; Sigma Factor Sigma; RNA Polymerase Sigma Factor Sigma-70 Family; Sigma-70 Family RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MDDPGAVFVRAVHAEHGAALLAFTTRLTGDRGRAEDVVQETMLRAWRQAPKLGADDRPLRPWLFTVAARIVVDEQRARRA
RPAELPGDVLASLPAGDDLERAMESWQVAEAFRTLSLEHRAALVETYFLGRSVAEAAAALDIPEGTVKSRVYYGLRALRL
ALEEQGWAP

Sequences:

>Translated_169_residues
MDDPGAVFVRAVHAEHGAALLAFTTRLTGDRGRAEDVVQETMLRAWRQAPKLGADDRPLRPWLFTVAARIVVDEQRARRA
RPAELPGDVLASLPAGDDLERAMESWQVAEAFRTLSLEHRAALVETYFLGRSVAEAAAALDIPEGTVKSRVYYGLRALRL
ALEEQGWAP
>Mature_169_residues
MDDPGAVFVRAVHAEHGAALLAFTTRLTGDRGRAEDVVQETMLRAWRQAPKLGADDRPLRPWLFTVAARIVVDEQRARRA
RPAELPGDVLASLPAGDDLERAMESWQVAEAFRTLSLEHRAALVETYFLGRSVAEAAAALDIPEGTVKSRVYYGLRALRL
ALEEQGWAP

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18643; Mature: 18643

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDPGAVFVRAVHAEHGAALLAFTTRLTGDRGRAEDVVQETMLRAWRQAPKLGADDRPLR
CCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCH
PWLFTVAARIVVDEQRARRARPAELPGDVLASLPAGDDLERAMESWQVAEAFRTLSLEHR
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
AALVETYFLGRSVAEAAAALDIPEGTVKSRVYYGLRALRLALEEQGWAP
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDDPGAVFVRAVHAEHGAALLAFTTRLTGDRGRAEDVVQETMLRAWRQAPKLGADDRPLR
CCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCH
PWLFTVAARIVVDEQRARRARPAELPGDVLASLPAGDDLERAMESWQVAEAFRTLSLEHR
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
AALVETYFLGRSVAEAAAALDIPEGTVKSRVYYGLRALRLALEEQGWAP
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA