| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158315853
Identifier: 158315853
GI number: 158315853
Start: 4849403
End: 4850707
Strand: Reverse
Name: 158315853
Synonym: Franean1_4068
Alternate gene names: NA
Gene position: 4850707-4849403 (Counterclockwise)
Preceding gene: 158315854
Following gene: 158315851
Centisome position: 54.0
GC content: 74.33
Gene sequence:
>1305_bases ATGTCCACGCCAGCGACGAGCGCGACACGAAGGCGGCCGGTAACGATGACCCCCCTCCCCCAGGCCCACGCCGAGGAGAC CGAGCAGTGGCTGACCCGGGTCGAGAAGGTCACCGGCCTGCTCGCCGAGCACCGGTCCCGGGCCGAGGAGGACCGCGCCA CATCCCCGGAGGTCATCGACGCGTTGCGGGAGCAGGGCTTCCACCGGATGTGGGTGTCCCGCGCGTTCGGTGGCGCGGGG GTGAGCCTGCGCACCGGATCGGCGGTGCTGCAGGCGATCGCGCGCACCGACCCGTCCGCCGCCTGGCAGATGGGCGTGCA GGGCGCGATCGGGCGCATCTCCGACTACCTGTCCGACCAGGCCGCCTGCCGCCTGTTCTGCAGCAGCCACGGGCTCGTCG TCGGCGGCATCAACCCGACCGGCCAGGCCGTGCCGGTACCCGGCGGGTACCGGCTCCGGGGCCGCTGGTCGTTCGCCAGC GGTGCCACCCACGCCGACTGGCTCGTCGCCAGCGCGGTCGTCACCGGCGGCTGCGCCCAGACGTCCACGAACACCCCGGC GCGCAGGTCGACACCCGCGCACGCCCCGACCCAGGTTCCGGCCCAGGCCCAGGTTCCGGGCAGTGCGCCGACGGGGAGCG CGCCGATCCGGATGCTGTGCGTCCCGCGCGGCGCCGCCACCTTCACCGACGACTGGCACGCGCTGGGCCTGCGCGGCACC GGCAGCGGGACCTTCACCGTGGACAACATCGTCGTCCCCGAAAGCCAGACCGTCGACGGCTCGCTGCTGCGGCGGCCACC CACCGCACGAAAGTCCCGGGGTTACGCCATCGCCTACTACGACTTCGCACCGTTCACCACCGCCTCCACCGCGCTCGGCA TAGCCCAGGACGCACTGCGCGCCTTCCGCCAGCTCGCCCTCCAGACCGTTCCCGCCCGCGCGACCGAGACCCTCGCCGGC GGCCACACCGTGCAGGCCACGTTCGCCCGCGCCACCGCGCTCGTCCGCGCCAGCCGGCTGATGCTCGAGGACGCCGCCGA CCAGGCGACGGAGCGCGGCGAGAACGGCGGCGACGAGCTGAGCGGGGTGATCCGGCTCGCCGCGGCCGCCGTCGGGGAGA ACTGCGTCCAGGCCGTCACCATGCTGCACACCGCGGCCGGCGCGAGCGCGCTGCGCTCCGGCGGGGACCTCGACCGCTGC TTCCGCGACGTCCACACCGCGGCCCGCCACATCACCCTCGCCGCGACGAACTTCGAGATGGTCGGCGCGCATCTGTTCGG CGGCACACTGCTCATGCGCCGCTGA
Upstream 100 bases:
>100_bases GCACACACGGCACTATTTCCTTTCAGCCGTCGATCCTGCGGGAGATTCCCTACCATCAGATCGTGGATGCGGATCTTCCC CAGCGCGCGGCCCCGGCCAG
Downstream 100 bases:
>100_bases CGTCCCCATCCGCCGCTGGCGCCGCTGCCTGCCGCCACCGTCACCCGGCCGGGGTCAGCCTCAGCTCGCGGCCGGGCCAC CGGGAGCGCAGCCAGCGGTC
Product: acyl-CoA dehydrogenase type 2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 434; Mature: 433
Protein sequence:
>434_residues MSTPATSATRRRPVTMTPLPQAHAEETEQWLTRVEKVTGLLAEHRSRAEEDRATSPEVIDALREQGFHRMWVSRAFGGAG VSLRTGSAVLQAIARTDPSAAWQMGVQGAIGRISDYLSDQAACRLFCSSHGLVVGGINPTGQAVPVPGGYRLRGRWSFAS GATHADWLVASAVVTGGCAQTSTNTPARRSTPAHAPTQVPAQAQVPGSAPTGSAPIRMLCVPRGAATFTDDWHALGLRGT GSGTFTVDNIVVPESQTVDGSLLRRPPTARKSRGYAIAYYDFAPFTTASTALGIAQDALRAFRQLALQTVPARATETLAG GHTVQATFARATALVRASRLMLEDAADQATERGENGGDELSGVIRLAAAAVGENCVQAVTMLHTAAGASALRSGGDLDRC FRDVHTAARHITLAATNFEMVGAHLFGGTLLMRR
Sequences:
>Translated_434_residues MSTPATSATRRRPVTMTPLPQAHAEETEQWLTRVEKVTGLLAEHRSRAEEDRATSPEVIDALREQGFHRMWVSRAFGGAG VSLRTGSAVLQAIARTDPSAAWQMGVQGAIGRISDYLSDQAACRLFCSSHGLVVGGINPTGQAVPVPGGYRLRGRWSFAS GATHADWLVASAVVTGGCAQTSTNTPARRSTPAHAPTQVPAQAQVPGSAPTGSAPIRMLCVPRGAATFTDDWHALGLRGT GSGTFTVDNIVVPESQTVDGSLLRRPPTARKSRGYAIAYYDFAPFTTASTALGIAQDALRAFRQLALQTVPARATETLAG GHTVQATFARATALVRASRLMLEDAADQATERGENGGDELSGVIRLAAAAVGENCVQAVTMLHTAAGASALRSGGDLDRC FRDVHTAARHITLAATNFEMVGAHLFGGTLLMRR >Mature_433_residues STPATSATRRRPVTMTPLPQAHAEETEQWLTRVEKVTGLLAEHRSRAEEDRATSPEVIDALREQGFHRMWVSRAFGGAGV SLRTGSAVLQAIARTDPSAAWQMGVQGAIGRISDYLSDQAACRLFCSSHGLVVGGINPTGQAVPVPGGYRLRGRWSFASG ATHADWLVASAVVTGGCAQTSTNTPARRSTPAHAPTQVPAQAQVPGSAPTGSAPIRMLCVPRGAATFTDDWHALGLRGTG SGTFTVDNIVVPESQTVDGSLLRRPPTARKSRGYAIAYYDFAPFTTASTALGIAQDALRAFRQLALQTVPARATETLAGG HTVQATFARATALVRASRLMLEDAADQATERGENGGDELSGVIRLAAAAVGENCVQAVTMLHTAAGASALRSGGDLDRCF RDVHTAARHITLAATNFEMVGAHLFGGTLLMRR
Specific function: Gives rise to a blue or pink color to bacterial colonies. May have an hydroxylase activity, resulting in the observed pigment production [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013107 - InterPro: IPR006092 - InterPro: IPR006091 - InterPro: IPR009075 - InterPro: IPR013786 - InterPro: IPR009100 [H]
Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02771 Acyl-CoA_dh_N [H]
EC number: NA
Molecular weight: Translated: 45659; Mature: 45528
Theoretical pI: Translated: 9.37; Mature: 9.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTPATSATRRRPVTMTPLPQAHAEETEQWLTRVEKVTGLLAEHRSRAEEDRATSPEVID CCCCCCCHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH ALREQGFHRMWVSRAFGGAGVSLRTGSAVLQAIARTDPSAAWQMGVQGAIGRISDYLSDQ HHHHCCHHHHHHHHHCCCCCCEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH AACRLFCSSHGLVVGGINPTGQAVPVPGGYRLRGRWSFASGATHADWLVASAVVTGGCAQ HHHHHHCCCCCEEEECCCCCCCEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCC TSTNTPARRSTPAHAPTQVPAQAQVPGSAPTGSAPIRMLCVPRGAATFTDDWHALGLRGT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEC GSGTFTVDNIVVPESQTVDGSLLRRPPTARKSRGYAIAYYDFAPFTTASTALGIAQDALR CCCCEEEEEEECCCCCCCCCHHHCCCCCCHHCCCEEEEEECCCCCCHHHHHHHHHHHHHH AFRQLALQTVPARATETLAGGHTVQATFARATALVRASRLMLEDAADQATERGENGGDEL HHHHHHHHHCCCHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH SGVIRLAAAAVGENCVQAVTMLHTAAGASALRSGGDLDRCFRDVHTAARHITLAATNFEM HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHHHHEEEEEECCHHH VGAHLFGGTLLMRR HHHHHHCCEEEECC >Mature Secondary Structure STPATSATRRRPVTMTPLPQAHAEETEQWLTRVEKVTGLLAEHRSRAEEDRATSPEVID CCCCCCHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH ALREQGFHRMWVSRAFGGAGVSLRTGSAVLQAIARTDPSAAWQMGVQGAIGRISDYLSDQ HHHHCCHHHHHHHHHCCCCCCEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH AACRLFCSSHGLVVGGINPTGQAVPVPGGYRLRGRWSFASGATHADWLVASAVVTGGCAQ HHHHHHCCCCCEEEECCCCCCCEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCC TSTNTPARRSTPAHAPTQVPAQAQVPGSAPTGSAPIRMLCVPRGAATFTDDWHALGLRGT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEC GSGTFTVDNIVVPESQTVDGSLLRRPPTARKSRGYAIAYYDFAPFTTASTALGIAQDALR CCCCEEEEEEECCCCCCCCCHHHCCCCCCHHCCCEEEEEECCCCCCHHHHHHHHHHHHHH AFRQLALQTVPARATETLAGGHTVQATFARATALVRASRLMLEDAADQATERGENGGDEL HHHHHHHHHCCCHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH SGVIRLAAAAVGENCVQAVTMLHTAAGASALRSGGDLDRCFRDVHTAARHITLAATNFEM HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHHHHEEEEEECCHHH VGAHLFGGTLLMRR HHHHHHCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2230720 [H]