| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158315797
Identifier: 158315797
GI number: 158315797
Start: 4790490
End: 4791815
Strand: Reverse
Name: 158315797
Synonym: Franean1_4011
Alternate gene names: NA
Gene position: 4791815-4790490 (Counterclockwise)
Preceding gene: 158315798
Following gene: 158315796
Centisome position: 53.35
GC content: 74.66
Gene sequence:
>1326_bases GTGGCCCCGGAAGACGCTGACTTCGGCAGCCTCGACGAACTGGCGGTCCAGCTCGCGCCGGGCGTCCTGGACGAAGCTGT GGCCGAAGCCCGCGAGGTCGCGCGTGGGCAACTCGCCCGACTCCTGGCGCGGGAGATCACCAGAGCCGCCTGCGAGCGGG GGGTGGCGAGCGCGACATGCTCCTCGCCGGCGGGCGCAGGCCGACGGGAGCACAGTGAGCACCGCCAGGCCCACCGCGAC GGCCCGGTGCCAGCCGGCCACGGCGGCCCCGGGCCAGGCAGCCGCGACGGGCAGTCGCCCGGGGGCGTCGAGCGGGCCCG GGCGCTTTACGCCTACGGGATCGTCCCCGCCGGTACCGACGTTTCGGGCCTGCCAGGCCTCGCCGAAGGAACGACTGTCT GTGCCGTCACTCGCGGCCAGGTCTCGCTCGTGGTCTCGGCCATCGACCCGGAGCTGCTGCGAGACGTCGAGGAGGACCTG TCGGAGACGGGACGTCTCGCCACCCTGGCCCGCGGCCACGATCAGGTCCTGCGGGAACTGCAGGATCTCGCGCCCGTGCT GCCGCTTCGGTTCGGGACCGTCCTCCCCGGCGAGAGCGAGGCAGCCGTCGTCCTCGACGATCCCGATACCGAGCTGCCGC GCGCCCTCGACGCGCTCCGCGACGCGCGCGAGTGGGGATTCCGGATCGACGCCGCGGGACCGACCGAACCCCCCGCGAGC GGCGTCTTCCGGTCCACAGGCGCGGGCGAGTCGACCAGGGCCACGCCCTGCGCGGCGGGCGCCGCGGACGCGGGGAACAT CGCTCGTCCGGGTGCGGGCACCGCGTACCTCTCGGCCCGCCGGGACGAACTGCGTGAGGAGGAGCGACGACGCGAGGAGA CAGCCCGGCTGGTCGAGTGGACGCACCGGGAGCTGCTGGTCCACGCGCGTGACGTGGCCCGCCGTCCTGGCCGGCCGGAC AGGGTCTTCGACTGCGCTTACCTCGTCGACCGCGACGAAGAGGAGGGATTCCTCGACACGGCGGAGCGGCTGGGTCCGCC GCTGGAGGAGGCCGGGTACGTCGCCGCGGTGACCGGGCCGTGGCCGCCCTACTCCTTCGTCCATCTGACACTGGGCGGGG ACGGCAGGAGCGGTTCCGACCGCGGGTCGGGTTCCGCCGGGGCGGGCCCGGCGGAAGCGCCCCGCGCGACAGCGCCCCGC GCGACAGCGCCCCGCGAGGGAACAACTCGCGTTGCGGCGGAAGCGGCGCCCGTCCGGTTCTCCGTCCCGACCGGGGATCG GCCGGGTGACGATCCAGAGTTCGAACCAGGTGAGGAGCGTGGCTGA
Upstream 100 bases:
>100_bases TCCCGGGCAGAGCCGTCCACCGGAGCCCCGGTGGAGGTGGCCGCCCGCCGCGACGAGCCGCGGCCGTTCTGGGCGCGGGA CGCGGAACGGAGGCATGACG
Downstream 100 bases:
>100_bases TCAGCGATTCGTCCCGACACCGCGGTACCGGGGCGGTGGCGTCGGTACCCGGCAGCGGCCGGGGGACCGCCCGGGAGGGC GGCCCGCCCGCAACTCGGCG
Product: gas vesicle synthesis GvpLGvpF
Products: NA
Alternate protein names: Gas Vesicle Protein L; Gas Vesicle Synthesis Protein
Number of amino acids: Translated: 441; Mature: 440
Protein sequence:
>441_residues MAPEDADFGSLDELAVQLAPGVLDEAVAEAREVARGQLARLLAREITRAACERGVASATCSSPAGAGRREHSEHRQAHRD GPVPAGHGGPGPGSRDGQSPGGVERARALYAYGIVPAGTDVSGLPGLAEGTTVCAVTRGQVSLVVSAIDPELLRDVEEDL SETGRLATLARGHDQVLRELQDLAPVLPLRFGTVLPGESEAAVVLDDPDTELPRALDALRDAREWGFRIDAAGPTEPPAS GVFRSTGAGESTRATPCAAGAADAGNIARPGAGTAYLSARRDELREEERRREETARLVEWTHRELLVHARDVARRPGRPD RVFDCAYLVDRDEEEGFLDTAERLGPPLEEAGYVAAVTGPWPPYSFVHLTLGGDGRSGSDRGSGSAGAGPAEAPRATAPR ATAPREGTTRVAAEAAPVRFSVPTGDRPGDDPEFEPGEERG
Sequences:
>Translated_441_residues MAPEDADFGSLDELAVQLAPGVLDEAVAEAREVARGQLARLLAREITRAACERGVASATCSSPAGAGRREHSEHRQAHRD GPVPAGHGGPGPGSRDGQSPGGVERARALYAYGIVPAGTDVSGLPGLAEGTTVCAVTRGQVSLVVSAIDPELLRDVEEDL SETGRLATLARGHDQVLRELQDLAPVLPLRFGTVLPGESEAAVVLDDPDTELPRALDALRDAREWGFRIDAAGPTEPPAS GVFRSTGAGESTRATPCAAGAADAGNIARPGAGTAYLSARRDELREEERRREETARLVEWTHRELLVHARDVARRPGRPD RVFDCAYLVDRDEEEGFLDTAERLGPPLEEAGYVAAVTGPWPPYSFVHLTLGGDGRSGSDRGSGSAGAGPAEAPRATAPR ATAPREGTTRVAAEAAPVRFSVPTGDRPGDDPEFEPGEERG >Mature_440_residues APEDADFGSLDELAVQLAPGVLDEAVAEAREVARGQLARLLAREITRAACERGVASATCSSPAGAGRREHSEHRQAHRDG PVPAGHGGPGPGSRDGQSPGGVERARALYAYGIVPAGTDVSGLPGLAEGTTVCAVTRGQVSLVVSAIDPELLRDVEEDLS ETGRLATLARGHDQVLRELQDLAPVLPLRFGTVLPGESEAAVVLDDPDTELPRALDALRDAREWGFRIDAAGPTEPPASG VFRSTGAGESTRATPCAAGAADAGNIARPGAGTAYLSARRDELREEERRREETARLVEWTHRELLVHARDVARRPGRPDR VFDCAYLVDRDEEEGFLDTAERLGPPLEEAGYVAAVTGPWPPYSFVHLTLGGDGRSGSDRGSGSAGAGPAEAPRATAPRA TAPREGTTRVAAEAAPVRFSVPTGDRPGDDPEFEPGEERG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46255; Mature: 46124
Theoretical pI: Translated: 4.58; Mature: 4.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.2 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPEDADFGSLDELAVQLAPGVLDEAVAEAREVARGQLARLLAREITRAACERGVASATC CCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC SSPAGAGRREHSEHRQAHRDGPVPAGHGGPGPGSRDGQSPGGVERARALYAYGIVPAGTD CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEECCCC VSGLPGLAEGTTVCAVTRGQVSLVVSAIDPELLRDVEEDLSETGRLATLARGHDQVLREL CCCCCCCCCCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHH QDLAPVLPLRFGTVLPGESEAAVVLDDPDTELPRALDALRDAREWGFRIDAAGPTEPPAS HHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCEEEECCCCCCCCCC GVFRSTGAGESTRATPCAAGAADAGNIARPGAGTAYLSARRDELREEERRREETARLVEW CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH THRELLVHARDVARRPGRPDRVFDCAYLVDRDEEEGFLDTAERLGPPLEEAGYVAAVTGP HHHHHHHHHHHHHHCCCCCCHHEEHHHHHCCCCCCCHHHHHHHCCCCHHHCCEEEEECCC WPPYSFVHLTLGGDGRSGSDRGSGSAGAGPAEAPRATAPRATAPREGTTRVAAEAAPVRF CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEE SVPTGDRPGDDPEFEPGEERG ECCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure APEDADFGSLDELAVQLAPGVLDEAVAEAREVARGQLARLLAREITRAACERGVASATC CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC SSPAGAGRREHSEHRQAHRDGPVPAGHGGPGPGSRDGQSPGGVERARALYAYGIVPAGTD CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEECCCC VSGLPGLAEGTTVCAVTRGQVSLVVSAIDPELLRDVEEDLSETGRLATLARGHDQVLREL CCCCCCCCCCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHH QDLAPVLPLRFGTVLPGESEAAVVLDDPDTELPRALDALRDAREWGFRIDAAGPTEPPAS HHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCEEEECCCCCCCCCC GVFRSTGAGESTRATPCAAGAADAGNIARPGAGTAYLSARRDELREEERRREETARLVEW CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH THRELLVHARDVARRPGRPDRVFDCAYLVDRDEEEGFLDTAERLGPPLEEAGYVAAVTGP HHHHHHHHHHHHHHCCCCCCHHEEHHHHHCCCCCCCHHHHHHHCCCCHHHCCEEEEECCC WPPYSFVHLTLGGDGRSGSDRGSGSAGAGPAEAPRATAPRATAPREGTTRVAAEAAPVRF CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEE SVPTGDRPGDDPEFEPGEERG ECCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA