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The map label for this gene is rtcB [H]

Identifier: 158315714

GI number: 158315714

Start: 4694974

End: 4696197

Strand: Reverse

Name: rtcB [H]

Synonym: Franean1_3926

Alternate gene names: 158315714

Gene position: 4696197-4694974 (Counterclockwise)

Preceding gene: 158315716

Following gene: 158315711

Centisome position: 52.28

GC content: 71.9

Gene sequence:

>1224_bases
GTGACCCCCGTCCACGAGCTGGCGGGAGCGACCGCGCCGATCTGGATGTGGACACCTCCCCAGGAGGTCGAAAGCGCCGC
GCTCGACCAGCTCCGCACCATCGCGGAACTCCCCTACGTCCACCACCACGTCGCCGTCATGCCCGACGTCCACCTCGGCA
AGGGCGCTACGGTGGGTTCGGTGATCGCGCTGCGCGACGCCGTCTCCCCGGCTGCCGTCGGCGTCGACATCGGATGCGGG
ATGGCCGCGCTGCGGACCAACCTGACCGCCGCCGACCTGCCCGACGACCTCGGGCCGGTGCGGGCCGCGGTCGAGGCGGC
CATCCCCGTCGGCCATCGCGGGCACACCGAGATCTCCCGCCGGGTCCGCGGCTACGCCGACCTGTGGGGGACCTTCGGCG
ACCTACACCCCAAGGTCACCGGGCGCAGCGGCAGCATCGACCGGGTGATGGCGCAGATGGGCAGCCTGGGCTCGGGCAAC
CACTTCGTCGAGCTCTGCCTGGACACCGAGGACGCCGTCTGGCTCATGCTGCACTCGGGCTCGCGCAACATCGGCAAGAC
CCTCGCCGAGCTGCACATCGCGGCCGCGAAGAAGCTCCCGCACAACACCGGCCTGCGCGACCGGGACCTCTCCGTCTTCC
TCGCCGGCACCCCCGAGATGGCCGCCTACCGAGCCGACCTCACCTGGGCGCAGACCTACGCGCGCCGCAACCGCGACACC
ATGCTCGCTCTCTACGTCGACGCGCTGCGCGACCACCTGCCCACGCTGCGCGTGCCGACCCCGCCCACGCACGGGCCGCA
CGCCGCCGACACCGCCTTCGCCGCGGTCAACTGCCACCACAACTACGTCGCCGAGGAGCACCACTACGGAGCGGACGTCC
TGGTCACCCGCAAGGGCGCGATCTCGGCCCGGGCCGGCGAGTACGGGATCATCCCCGGCTCCATGGGCACCCGCTCGTAC
ATCGTCCGCGGCCTCGGTAGCGCCGAGTCGTTCCACTCGGCCGCGCACGGCGCCGGGCGGCGGATGAGCCGTACCCGTGC
CCGCAAGGAGTTCACCACCGACGACCTCGTCGCCCAGACCACCGGCGTCGAGTGCCGCAAGGACCCCGGAGTCCTCGACG
AGATCCCCGCTGCCTACAAGGACATCGACGCCGTCATCGCCCACCAGAGCGATCTCGTGGACGTCGCCGCCGAGCTGCGC
GCCGTCCTCTGTGTGAAGGGCTGA

Upstream 100 bases:

>100_bases
CAACGGAAATTGAATGGCCGGCGGCACGGAAACCGGCCATCGTTGATCTCGGCGGCACGCGGGGCACCGGTCCCGCGCCG
TGACCAAGGAGTGATGCCCC

Downstream 100 bases:

>100_bases
CCCGGCCCGGACCAGCCCGCGTCCGCCCGGTCCGCGCTCCGCTGGCCGGGCGGGCGCTGCGTTGCCGGGCGGGCGCTGCG
TTGCCGGCGGGCGGACGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MTPVHELAGATAPIWMWTPPQEVESAALDQLRTIAELPYVHHHVAVMPDVHLGKGATVGSVIALRDAVSPAAVGVDIGCG
MAALRTNLTAADLPDDLGPVRAAVEAAIPVGHRGHTEISRRVRGYADLWGTFGDLHPKVTGRSGSIDRVMAQMGSLGSGN
HFVELCLDTEDAVWLMLHSGSRNIGKTLAELHIAAAKKLPHNTGLRDRDLSVFLAGTPEMAAYRADLTWAQTYARRNRDT
MLALYVDALRDHLPTLRVPTPPTHGPHAADTAFAAVNCHHNYVAEEHHYGADVLVTRKGAISARAGEYGIIPGSMGTRSY
IVRGLGSAESFHSAAHGAGRRMSRTRARKEFTTDDLVAQTTGVECRKDPGVLDEIPAAYKDIDAVIAHQSDLVDVAAELR
AVLCVKG

Sequences:

>Translated_407_residues
MTPVHELAGATAPIWMWTPPQEVESAALDQLRTIAELPYVHHHVAVMPDVHLGKGATVGSVIALRDAVSPAAVGVDIGCG
MAALRTNLTAADLPDDLGPVRAAVEAAIPVGHRGHTEISRRVRGYADLWGTFGDLHPKVTGRSGSIDRVMAQMGSLGSGN
HFVELCLDTEDAVWLMLHSGSRNIGKTLAELHIAAAKKLPHNTGLRDRDLSVFLAGTPEMAAYRADLTWAQTYARRNRDT
MLALYVDALRDHLPTLRVPTPPTHGPHAADTAFAAVNCHHNYVAEEHHYGADVLVTRKGAISARAGEYGIIPGSMGTRSY
IVRGLGSAESFHSAAHGAGRRMSRTRARKEFTTDDLVAQTTGVECRKDPGVLDEIPAAYKDIDAVIAHQSDLVDVAAELR
AVLCVKG
>Mature_406_residues
TPVHELAGATAPIWMWTPPQEVESAALDQLRTIAELPYVHHHVAVMPDVHLGKGATVGSVIALRDAVSPAAVGVDIGCGM
AALRTNLTAADLPDDLGPVRAAVEAAIPVGHRGHTEISRRVRGYADLWGTFGDLHPKVTGRSGSIDRVMAQMGSLGSGNH
FVELCLDTEDAVWLMLHSGSRNIGKTLAELHIAAAKKLPHNTGLRDRDLSVFLAGTPEMAAYRADLTWAQTYARRNRDTM
LALYVDALRDHLPTLRVPTPPTHGPHAADTAFAAVNCHHNYVAEEHHYGADVLVTRKGAISARAGEYGIIPGSMGTRSYI
VRGLGSAESFHSAAHGAGRRMSRTRARKEFTTDDLVAQTTGVECRKDPGVLDEIPAAYKDIDAVIAHQSDLVDVAAELRA
VLCVKG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=453, Percent_Identity=28.6975717439294, Blast_Score=129, Evalue=5e-30,
Organism=Escherichia coli, GI2367224, Length=418, Percent_Identity=49.0430622009569, Blast_Score=384, Evalue=1e-108,
Organism=Caenorhabditis elegans, GI17506665, Length=459, Percent_Identity=26.5795206971678, Blast_Score=120, Evalue=1e-27,
Organism=Drosophila melanogaster, GI24585217, Length=453, Percent_Identity=26.4900662251656, Blast_Score=109, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 43577; Mature: 43446

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPVHELAGATAPIWMWTPPQEVESAALDQLRTIAELPYVHHHVAVMPDVHLGKGATVGS
CCCHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHCCHHHHEEEECCCCCCCCCCCHHH
VIALRDAVSPAAVGVDIGCGMAALRTNLTAADLPDDLGPVRAAVEAAIPVGHRGHTEISR
HHHHHHCCCCHHCCEECCCCHHHHHCCCCHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHH
RVRGYADLWGTFGDLHPKVTGRSGSIDRVMAQMGSLGSGNHFVELCLDTEDAVWLMLHSG
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECC
SRNIGKTLAELHIAAAKKLPHNTGLRDRDLSVFLAGTPEMAAYRADLTWAQTYARRNRDT
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHHCCHHHHHHHHCCCCH
MLALYVDALRDHLPTLRVPTPPTHGPHAADTAFAAVNCHHNYVAEEHHYGADVLVTRKGA
HHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHEEEEECCCCHHCCCCCCCCCEEEEECCC
ISARAGEYGIIPGSMGTRSYIVRGLGSAESFHSAAHGAGRRMSRTRARKEFTTDDLVAQT
CEECCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
TGVECRKDPGVLDEIPAAYKDIDAVIAHQSDLVDVAAELRAVLCVKG
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TPVHELAGATAPIWMWTPPQEVESAALDQLRTIAELPYVHHHVAVMPDVHLGKGATVGS
CCHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHCCHHHHEEEECCCCCCCCCCCHHH
VIALRDAVSPAAVGVDIGCGMAALRTNLTAADLPDDLGPVRAAVEAAIPVGHRGHTEISR
HHHHHHCCCCHHCCEECCCCHHHHHCCCCHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHH
RVRGYADLWGTFGDLHPKVTGRSGSIDRVMAQMGSLGSGNHFVELCLDTEDAVWLMLHSG
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECC
SRNIGKTLAELHIAAAKKLPHNTGLRDRDLSVFLAGTPEMAAYRADLTWAQTYARRNRDT
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHHCCHHHHHHHHCCCCH
MLALYVDALRDHLPTLRVPTPPTHGPHAADTAFAAVNCHHNYVAEEHHYGADVLVTRKGA
HHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHEEEEECCCCHHCCCCCCCCCEEEEECCC
ISARAGEYGIIPGSMGTRSYIVRGLGSAESFHSAAHGAGRRMSRTRARKEFTTDDLVAQT
CEECCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
TGVECRKDPGVLDEIPAAYKDIDAVIAHQSDLVDVAAELRAVLCVKG
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9738023 [H]