| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158315691
Identifier: 158315691
GI number: 158315691
Start: 4668253
End: 4669761
Strand: Reverse
Name: 158315691
Synonym: Franean1_3903
Alternate gene names: NA
Gene position: 4669761-4668253 (Counterclockwise)
Preceding gene: 158315693
Following gene: 158315690
Centisome position: 51.99
GC content: 71.84
Gene sequence:
>1509_bases ATGCTGGGTGTCATGGGTGGGTTCCGTTGCGACTGCGGTAGTTGCCGTGGGCGAGGATGGCGGCACGGTAGGCGAGGATC CTGTCTGTACGCCCTCGGCCTTGAGCTTGACGACGCAGGCTTCGACTACTCCGTGCTCAGCGGGTTCCGGGCGCGGCTGG TCGAGCATGGCCTGGAAGCCACGGTCCTCGACCTGCTGCTCGCCCGGCTCTCGGAGCTGGGGCTGCTGCGCGCGGGCGGG CGAGCCCGCACGGACTCCACCCATGTGCTCGCGGCGGTGCGTTCGCTCAACCGGCTGGAGTTCGTCGGGGAGACGATGCG CGCCGCGCTGGAGGCGCTGGCCGGGGCGGCCCCCGGCTGGCTGACCGGCGTCGTCGAGCCCGGCTGGGACCGCCGCTACC AGGCACGGGTGGAGTCCTACCGGCTGCCCGCCTCGGCGGCGGGGCGGGCCGAGCTGGCTGTCACGGTCGGCCGGGACGGG TTCGCCCTGCTCACTGCCCTCGGCGCGGCGGACGCGCCGGTGTGGTTGCGCCAGGTCCCCGCCGTCGACGTCCTGCGGAT CGCCTGGATCCAGCAGTACCACCGCACCGAGAACGCCGACGGCGGGACGGAGGTGGCCTGGCGGGAGGACAAGGACCTCC CGCCAGGAAGGCTGCGGCTGGCCTCGCCCTACGACCTGGCCGCCCGTTACGGGGTCAAACGCGGGTCCGGCTGGGTCGGC TACAAGGTCCACCTGACCGAGACCTGCAACGACGACACCCCCCATGTGATCACGAACGTGGAGACGACCCACGCCACCAT GACCGACCAGGAGACGACCCCGGTCGTGCACACCCACCTCGCCAGCCGCGGGCTGCTGCCCGCCGAGCACACCGTCGACA CCGGCTACACCTCCACCGAGCTGTTCCTGACCAGCGCGGCCGAGTACGGCGTCGAACTGGTCGGCCCGCTCGGGGTGAAC ACCTCCTGGCAGGCCCGCACCCCCGGCGCCTTCGACCTGTCCGACTTCGCCGTCGACTGGGACCGCGAGCAGGTCACCTG CCCGAACGGAGCGGTCAGCAGCAGCTGGCGCACCGAGAAGGCCCGAGGCAAGCCCGTCCTGAAGGTCGACTTCCGCAGGA AGGACTGCCTGCCCTGCCCACTGCGCGCCCGGTGCACCTCCTCGGCAACCAACACCCGCAAGCTCACCCTGCGACACCGG GAACAGCACGAACTGCTCGAACGCCTCCGCGTCGAGCAGGCCACCGACGCCTGGAAGAAGCGCTACGACCGCCGGGCCGG CGTCGAGGGCACCATGCGCCAGGCCACCGCCGTCACTGGTATCCGCCACGCCCGCTACCACGGCCAGGACAAGAACCACC TCGCCCACGTCCTCGCGGCCACGACGGTCAACATCGTCCGCCTCGACGCGTGGTGGACCGGCACCCCGACCGGACGAACC CGGACCAGCCACTGCCCCTCGATCTCGGCGATCCGACCACGCCCCTCGGTCGGGCGACGCTGGCGCTGA
Upstream 100 bases:
>100_bases CGCGGGAGACCGGATTCCTCCCCGACCTGAAGGACTCCGTTGCCCAATTCGGTCATCCGACGACTCCGTCGCGGTGCGTA GCGGTGAATGGTGAGTGTTC
Downstream 100 bases:
>100_bases TGGGTCTGCTCCCGTCGCCCAGCGATCCCGCCCGCGACGGCTGACCCCCGCCTGGCCGCCCGGTCCGCCCGGTGCGTTTG GTGCCGACGGACCTCCCCGC
Product: transposase
Products: NA
Alternate protein names: Transposase; Transposase Is4-Like Protein
Number of amino acids: Translated: 502; Mature: 502
Protein sequence:
>502_residues MLGVMGGFRCDCGSCRGRGWRHGRRGSCLYALGLELDDAGFDYSVLSGFRARLVEHGLEATVLDLLLARLSELGLLRAGG RARTDSTHVLAAVRSLNRLEFVGETMRAALEALAGAAPGWLTGVVEPGWDRRYQARVESYRLPASAAGRAELAVTVGRDG FALLTALGAADAPVWLRQVPAVDVLRIAWIQQYHRTENADGGTEVAWREDKDLPPGRLRLASPYDLAARYGVKRGSGWVG YKVHLTETCNDDTPHVITNVETTHATMTDQETTPVVHTHLASRGLLPAEHTVDTGYTSTELFLTSAAEYGVELVGPLGVN TSWQARTPGAFDLSDFAVDWDREQVTCPNGAVSSSWRTEKARGKPVLKVDFRRKDCLPCPLRARCTSSATNTRKLTLRHR EQHELLERLRVEQATDAWKKRYDRRAGVEGTMRQATAVTGIRHARYHGQDKNHLAHVLAATTVNIVRLDAWWTGTPTGRT RTSHCPSISAIRPRPSVGRRWR
Sequences:
>Translated_502_residues MLGVMGGFRCDCGSCRGRGWRHGRRGSCLYALGLELDDAGFDYSVLSGFRARLVEHGLEATVLDLLLARLSELGLLRAGG RARTDSTHVLAAVRSLNRLEFVGETMRAALEALAGAAPGWLTGVVEPGWDRRYQARVESYRLPASAAGRAELAVTVGRDG FALLTALGAADAPVWLRQVPAVDVLRIAWIQQYHRTENADGGTEVAWREDKDLPPGRLRLASPYDLAARYGVKRGSGWVG YKVHLTETCNDDTPHVITNVETTHATMTDQETTPVVHTHLASRGLLPAEHTVDTGYTSTELFLTSAAEYGVELVGPLGVN TSWQARTPGAFDLSDFAVDWDREQVTCPNGAVSSSWRTEKARGKPVLKVDFRRKDCLPCPLRARCTSSATNTRKLTLRHR EQHELLERLRVEQATDAWKKRYDRRAGVEGTMRQATAVTGIRHARYHGQDKNHLAHVLAATTVNIVRLDAWWTGTPTGRT RTSHCPSISAIRPRPSVGRRWR >Mature_502_residues MLGVMGGFRCDCGSCRGRGWRHGRRGSCLYALGLELDDAGFDYSVLSGFRARLVEHGLEATVLDLLLARLSELGLLRAGG RARTDSTHVLAAVRSLNRLEFVGETMRAALEALAGAAPGWLTGVVEPGWDRRYQARVESYRLPASAAGRAELAVTVGRDG FALLTALGAADAPVWLRQVPAVDVLRIAWIQQYHRTENADGGTEVAWREDKDLPPGRLRLASPYDLAARYGVKRGSGWVG YKVHLTETCNDDTPHVITNVETTHATMTDQETTPVVHTHLASRGLLPAEHTVDTGYTSTELFLTSAAEYGVELVGPLGVN TSWQARTPGAFDLSDFAVDWDREQVTCPNGAVSSSWRTEKARGKPVLKVDFRRKDCLPCPLRARCTSSATNTRKLTLRHR EQHELLERLRVEQATDAWKKRYDRRAGVEGTMRQATAVTGIRHARYHGQDKNHLAHVLAATTVNIVRLDAWWTGTPTGRT RTSHCPSISAIRPRPSVGRRWR
Specific function: Unknown
COG id: COG3666
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55409; Mature: 55409
Theoretical pI: Translated: 9.51; Mature: 9.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLGVMGGFRCDCGSCRGRGWRHGRRGSCLYALGLELDDAGFDYSVLSGFRARLVEHGLEA CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCHH TVLDLLLARLSELGLLRAGGRARTDSTHVLAAVRSLNRLEFVGETMRAALEALAGAAPGW HHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC LTGVVEPGWDRRYQARVESYRLPASAAGRAELAVTVGRDGFALLTALGAADAPVWLRQVP EEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHCCCCCCHHHHHCC AVDVLRIAWIQQYHRTENADGGTEVAWREDKDLPPGRLRLASPYDLAARYGVKRGSGWVG HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEECCCHHHHHHHCCCCCCCEEE YKVHLTETCNDDTPHVITNVETTHATMTDQETTPVVHTHLASRGLLPAEHTVDTGYTSTE EEEEEEECCCCCCCEEEECCEECEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHH LFLTSAAEYGVELVGPLGVNTSWQARTPGAFDLSDFAVDWDREQVTCPNGAVSSSWRTEK EEEEEHHHCCEEEEECCCCCCCCCCCCCCCCCHHHHEECCCCCEEECCCCCCCCCCCCHH ARGKPVLKVDFRRKDCLPCPLRARCTSSATNTRKLTLRHREQHELLERLRVEQATDAWKK HCCCCEEEEECCCCCCCCCCCHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHH RYDRRAGVEGTMRQATAVTGIRHARYHGQDKNHLAHVLAATTVNIVRLDAWWTGTPTGRT HHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEEEEEEEECCCCCCCC RTSHCPSISAIRPRPSVGRRWR CCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MLGVMGGFRCDCGSCRGRGWRHGRRGSCLYALGLELDDAGFDYSVLSGFRARLVEHGLEA CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCHH TVLDLLLARLSELGLLRAGGRARTDSTHVLAAVRSLNRLEFVGETMRAALEALAGAAPGW HHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC LTGVVEPGWDRRYQARVESYRLPASAAGRAELAVTVGRDGFALLTALGAADAPVWLRQVP EEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHCCCCCCHHHHHCC AVDVLRIAWIQQYHRTENADGGTEVAWREDKDLPPGRLRLASPYDLAARYGVKRGSGWVG HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEECCCHHHHHHHCCCCCCCEEE YKVHLTETCNDDTPHVITNVETTHATMTDQETTPVVHTHLASRGLLPAEHTVDTGYTSTE EEEEEEECCCCCCCEEEECCEECEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHH LFLTSAAEYGVELVGPLGVNTSWQARTPGAFDLSDFAVDWDREQVTCPNGAVSSSWRTEK EEEEEHHHCCEEEEECCCCCCCCCCCCCCCCCHHHHEECCCCCEEECCCCCCCCCCCCHH ARGKPVLKVDFRRKDCLPCPLRARCTSSATNTRKLTLRHREQHELLERLRVEQATDAWKK HCCCCEEEEECCCCCCCCCCCHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHH RYDRRAGVEGTMRQATAVTGIRHARYHGQDKNHLAHVLAATTVNIVRLDAWWTGTPTGRT HHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEEEEEEEECCCCCCCC RTSHCPSISAIRPRPSVGRRWR CCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA