| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158315670
Identifier: 158315670
GI number: 158315670
Start: 4612043
End: 4612504
Strand: Reverse
Name: 158315670
Synonym: Franean1_3880
Alternate gene names: NA
Gene position: 4612504-4612043 (Counterclockwise)
Preceding gene: 158315671
Following gene: 158315669
Centisome position: 51.35
GC content: 68.83
Gene sequence:
>462_bases GTGGCTGACGAACCGGAGCCGCCCGCCAGGACTCGCCCCACCTACCTCCAGGACGAGCGGGAGCTGCTCGATGGCTGGCT CGAGTTCCACCGGTCGACCCTGTTGGCGAAGTGCGACGGGCTGAGCGACGACCTGCGCGGAGCCAGGCCGGTGGCCACGT CGCTGCTGTCCCTGCACGGCCTGGTCCGTCACCTGGCGGAGACCGAGCGAAACTGGTTCAGCCGGATCCTGGAGGCGAAG CCCGACCTGGGACGGATCTGGTACGACCCGGCGGTCGAGGGCAGTCCGCTGGTCCCCCTCGAGCACACGAGCTGGGAGGA GGACCTCGCCACCTACCAGGAGCAGTGCGAACACAGCCGCCGGGTGGCCGCGGTCAGGTCCTTCGACGACTGCGGCGTGT GGCGAGGCAAGCAGGTCTCGATGAGGTCGGTCTACCTGCACATGATCCAGGAGTACGCCTGA
Upstream 100 bases:
>100_bases GCCGCGGAACAGGCGCACATCGCGACCGTGTTCGAGCCCTACGCCCGCGCCCGGGCCCGGGCCCACGACCTGCCGACGGC GTCGCGCGCAGGAGCGGTTG
Downstream 100 bases:
>100_bases CACAACGGCCACGCGGACATGATCCGAGAGCTCCTCGACGGCACCGTCGGTCTCTGACCATCTCTGGTAGCCGCCTCTGG TAGCCGCCCGGGTACGGATG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 153; Mature: 152
Protein sequence:
>153_residues MADEPEPPARTRPTYLQDERELLDGWLEFHRSTLLAKCDGLSDDLRGARPVATSLLSLHGLVRHLAETERNWFSRILEAK PDLGRIWYDPAVEGSPLVPLEHTSWEEDLATYQEQCEHSRRVAAVRSFDDCGVWRGKQVSMRSVYLHMIQEYA
Sequences:
>Translated_153_residues MADEPEPPARTRPTYLQDERELLDGWLEFHRSTLLAKCDGLSDDLRGARPVATSLLSLHGLVRHLAETERNWFSRILEAK PDLGRIWYDPAVEGSPLVPLEHTSWEEDLATYQEQCEHSRRVAAVRSFDDCGVWRGKQVSMRSVYLHMIQEYA >Mature_152_residues ADEPEPPARTRPTYLQDERELLDGWLEFHRSTLLAKCDGLSDDLRGARPVATSLLSLHGLVRHLAETERNWFSRILEAKP DLGRIWYDPAVEGSPLVPLEHTSWEEDLATYQEQCEHSRRVAAVRSFDDCGVWRGKQVSMRSVYLHMIQEYA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007061 [H]
Pfam domain/function: PF04978 DUF664 [H]
EC number: NA
Molecular weight: Translated: 17648; Mature: 17517
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADEPEPPARTRPTYLQDERELLDGWLEFHRSTLLAKCDGLSDDLRGARPVATSLLSLHG CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH LVRHLAETERNWFSRILEAKPDLGRIWYDPAVEGSPLVPLEHTSWEEDLATYQEQCEHSR HHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH RVAAVRSFDDCGVWRGKQVSMRSVYLHMIQEYA HHHHHHCCHHCCCCCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure ADEPEPPARTRPTYLQDERELLDGWLEFHRSTLLAKCDGLSDDLRGARPVATSLLSLHG CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH LVRHLAETERNWFSRILEAKPDLGRIWYDPAVEGSPLVPLEHTSWEEDLATYQEQCEHSR HHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH RVAAVRSFDDCGVWRGKQVSMRSVYLHMIQEYA HHHHHHCCHHCCCCCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2575701; 12000953 [H]