| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is iniA [H]
Identifier: 158315598
GI number: 158315598
Start: 4520533
End: 4522470
Strand: Reverse
Name: iniA [H]
Synonym: Franean1_3807
Alternate gene names: 158315598
Gene position: 4522470-4520533 (Counterclockwise)
Preceding gene: 158315600
Following gene: 158315597
Centisome position: 50.35
GC content: 73.99
Gene sequence:
>1938_bases ATGACGGGACCGAGCGGCGATTCAAGGTCCACACAATTTCCGCCCCCGCCAGACGCGATCCGGCTGCTCGACACGGTGGT GGCGGAGGCGGCCCGGCGCCGCCGGGCGGACCTGCAGGCGCGGCTCGCCGGGGAACGCGGGCGGCTGGAGACGTCGACCT GCCTCGTGGCCGTGGTCGGCGAGTTCAAGAAGGGCAAGGGCACGCTCATCAACGCGCTGCTGGACATGCGGGTGTGCGGC ACTGACCCGGTGGCCACGACGCTGGTACCCACGCTCGTCAGGTACGCGCCACGGGCAACGGCGACGCTGCGGCGCGCCGC GCCCGCCTCGGACGGCTCGGCCGACAGCGCTGCCCCGCCGTCCACCCGTCCCACCGACGAGCCGGTCACCATCACAGCTC TCCACGAGGTCACCCAGGCGGCCGCCGCGGAGGGGCGGGGGGCGTCCATCACCACGGTGACCGGGGCGGAGATCGGGATC CCGCGCCGGTTGTTGGAGTCGGGCCTGCTGCTGCTCGACACGCCGGGCCTGAACGGCGGGCTCGCCGACGGCCGGGCCAC CGCTACCCTGCGCGCCGCCGCCGGCGCGGACGCGGTGGTGTTCGTCTCGGACGCGAGCCAGGAGCTCACCGCACCCGAAC TCGAACTGCTGCGCCGGCTGGTGCGGCTGTGCCCGGCGGTCGTGCTGGCTCTCGCCAAGGTCGACGTCTACCCGCACTGG CGGCGCATCCGCGACACGAACCTCGCCCACCTGCGCCGTTCGCGACTGGAGCTGCCGATCTTCCCGCTGGCGGCCCCGCT GCGCCATCATGCGCTGCGAGCCGGCCGGTCCGATCTGGACGGCGAATCGGGGTATCCGGCTCTCGCCGCCATCCTGCGGG ACGACATCGTCGGCGGGCGACGCGCCCGGCTGGAGAAGATCGCGGCGGAGGCGGCCACGGACGCCCTCGGGCAGATGCTC GCCGAACTCGAGACGGAACGGGCGACCCTCGCCGACCCGGCGGCGGCACGGGAGCTGCGGGCCAAGCTCGAGGAGGCCGA GCAGCGCGCCAAGGGGATGAGCGAGGCCGCCGCCACCTGGCGACGGGTGCTGGGCGACCGGTCCCAGGACATGACCGCGC GGGTGCGGGACGACCTCGACAACCGGCTGCGCAATCTGGAATCGGCGGTGGCCAGGCGGATCGAGACAAGCGAGCCGGCG CGCGACTGGGACGACCTGCGCGGCTGGCTGTACCGGCAGACCAACGACGCCCTGCTGACCCACCGGATGATGATCCGGTC CGAGGCGGAAGCCCTGGTCACCGCCGTCACCCGGGAGTTCGAGGCGGATTCGGAGCGGGTGCGCGCACTCCTGGACGCGG CTACCGGGCTGCCTCTCGGCACCATCACCGAAGGGCACGACCCGGAGTTCCAGCGGGTCGGCGGTGTGGACCTGCTCGCC CAGGGGGCCCGCGGCGGCGGCATCGGGCTGATGATCGTCTCCGTGGGCGGGACTGTGGCCAGCATCGCCGGGTTCGCGGC GGCGTCAGTGCTACTCGCGCCGGTGGGCATCGGCGTCGTGGTCGTCCTCGGCCGGCGGACGATCGCCTCGATCCGGGAGA ACGAGGTGCGCGTCCACCGGGCGAACGCGCTGAAGACCGCCCGCGAGTACCTCGCCGAGACCCGCCGGGTCGCCGCCCAG GACTCGGCGACCGCCCGCGAACAGATCTACCGCAATCTCCGCGACACCCTCACCGAGCAGGCGGCCGAGCTGTCCACCTC CGCCCAGCGGAACAAGGAGGCCTCGGCACGCTCGATCAAGGCGACCTGGGAGTCGCGCCGGGCCCGGCTCGCGGCGGTGG AGGCGGAGGTCGCCCGGCTGCGCTCGCTGGTGGGCACAGCCGGGGCGGCCGGCACAGTCAGCACCGCCGGCACCGCCGAC ACGGGGATGGCGCCGTGA
Upstream 100 bases:
>100_bases CCAGTCCTCCCGCCCGCGTCGCCTGGTCGTCGGGGCGCACCACATATGGCACATGGCTCTCAAGACCGGCCCACGGTCAC ACGGCACTTGAGAAAAACTC
Downstream 100 bases:
>100_bases CCGGCCCCGGGCAGGGCGGGCTGCGGGAACAGGTCCGCGCGCTGCTGTCCGACGCGGTCGACGCCTACCGCGGCACCCCC GCCGAGGCGCTGCTCCGTCA
Product: dynamin family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 645; Mature: 644
Protein sequence:
>645_residues MTGPSGDSRSTQFPPPPDAIRLLDTVVAEAARRRRADLQARLAGERGRLETSTCLVAVVGEFKKGKGTLINALLDMRVCG TDPVATTLVPTLVRYAPRATATLRRAAPASDGSADSAAPPSTRPTDEPVTITALHEVTQAAAAEGRGASITTVTGAEIGI PRRLLESGLLLLDTPGLNGGLADGRATATLRAAAGADAVVFVSDASQELTAPELELLRRLVRLCPAVVLALAKVDVYPHW RRIRDTNLAHLRRSRLELPIFPLAAPLRHHALRAGRSDLDGESGYPALAAILRDDIVGGRRARLEKIAAEAATDALGQML AELETERATLADPAAARELRAKLEEAEQRAKGMSEAAATWRRVLGDRSQDMTARVRDDLDNRLRNLESAVARRIETSEPA RDWDDLRGWLYRQTNDALLTHRMMIRSEAEALVTAVTREFEADSERVRALLDAATGLPLGTITEGHDPEFQRVGGVDLLA QGARGGGIGLMIVSVGGTVASIAGFAAASVLLAPVGIGVVVVLGRRTIASIRENEVRVHRANALKTAREYLAETRRVAAQ DSATAREQIYRNLRDTLTEQAAELSTSAQRNKEASARSIKATWESRRARLAAVEAEVARLRSLVGTAGAAGTVSTAGTAD TGMAP
Sequences:
>Translated_645_residues MTGPSGDSRSTQFPPPPDAIRLLDTVVAEAARRRRADLQARLAGERGRLETSTCLVAVVGEFKKGKGTLINALLDMRVCG TDPVATTLVPTLVRYAPRATATLRRAAPASDGSADSAAPPSTRPTDEPVTITALHEVTQAAAAEGRGASITTVTGAEIGI PRRLLESGLLLLDTPGLNGGLADGRATATLRAAAGADAVVFVSDASQELTAPELELLRRLVRLCPAVVLALAKVDVYPHW RRIRDTNLAHLRRSRLELPIFPLAAPLRHHALRAGRSDLDGESGYPALAAILRDDIVGGRRARLEKIAAEAATDALGQML AELETERATLADPAAARELRAKLEEAEQRAKGMSEAAATWRRVLGDRSQDMTARVRDDLDNRLRNLESAVARRIETSEPA RDWDDLRGWLYRQTNDALLTHRMMIRSEAEALVTAVTREFEADSERVRALLDAATGLPLGTITEGHDPEFQRVGGVDLLA QGARGGGIGLMIVSVGGTVASIAGFAAASVLLAPVGIGVVVVLGRRTIASIRENEVRVHRANALKTAREYLAETRRVAAQ DSATAREQIYRNLRDTLTEQAAELSTSAQRNKEASARSIKATWESRRARLAAVEAEVARLRSLVGTAGAAGTVSTAGTAD TGMAP >Mature_644_residues TGPSGDSRSTQFPPPPDAIRLLDTVVAEAARRRRADLQARLAGERGRLETSTCLVAVVGEFKKGKGTLINALLDMRVCGT DPVATTLVPTLVRYAPRATATLRRAAPASDGSADSAAPPSTRPTDEPVTITALHEVTQAAAAEGRGASITTVTGAEIGIP RRLLESGLLLLDTPGLNGGLADGRATATLRAAAGADAVVFVSDASQELTAPELELLRRLVRLCPAVVLALAKVDVYPHWR RIRDTNLAHLRRSRLELPIFPLAAPLRHHALRAGRSDLDGESGYPALAAILRDDIVGGRRARLEKIAAEAATDALGQMLA ELETERATLADPAAARELRAKLEEAEQRAKGMSEAAATWRRVLGDRSQDMTARVRDDLDNRLRNLESAVARRIETSEPAR DWDDLRGWLYRQTNDALLTHRMMIRSEAEALVTAVTREFEADSERVRALLDAATGLPLGTITEGHDPEFQRVGGVDLLAQ GARGGGIGLMIVSVGGTVASIAGFAAASVLLAPVGIGVVVVLGRRTIASIRENEVRVHRANALKTAREYLAETRRVAAQD SATAREQIYRNLRDTLTEQAAELSTSAQRNKEASARSIKATWESRRARLAAVEAEVARLRSLVGTAGAAGTVSTAGTADT GMAP
Specific function: Participates in the development of tolerance to both isoniazid and ethambutol. May function through a MDR-pump like mechanism, although it does not appear to directly transport isoniazid from the cell [H]
COG id: COG0699
COG function: function code R; Predicted GTPases (dynamin-related)
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001401 [H]
Pfam domain/function: PF00350 Dynamin_N [H]
EC number: NA
Molecular weight: Translated: 68718; Mature: 68587
Theoretical pI: Translated: 9.41; Mature: 9.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGPSGDSRSTQFPPPPDAIRLLDTVVAEAARRRRADLQARLAGERGRLETSTCLVAVVG CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH EFKKGKGTLINALLDMRVCGTDPVATTLVPTLVRYAPRATATLRRAAPASDGSADSAAPP HHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCC STRPTDEPVTITALHEVTQAAAAEGRGASITTVTGAEIGIPRRLLESGLLLLDTPGLNGG CCCCCCCCEEEHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHCCCEEEECCCCCCC LADGRATATLRAAAGADAVVFVSDASQELTAPELELLRRLVRLCPAVVLALAKVDVYPHW CCCCCHHHEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHH RRIRDTNLAHLRRSRLELPIFPLAAPLRHHALRAGRSDLDGESGYPALAAILRDDIVGGR HHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCH RARLEKIAAEAATDALGQMLAELETERATLADPAAARELRAKLEEAEQRAKGMSEAAATW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH RRVLGDRSQDMTARVRDDLDNRLRNLESAVARRIETSEPARDWDDLRGWLYRQTNDALLT HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHH HRMMIRSEAEALVTAVTREFEADSERVRALLDAATGLPLGTITEGHDPEFQRVGGVDLLA HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHHHH QGARGGGIGLMIVSVGGTVASIAGFAAASVLLAPVGIGVVVVLGRRTIASIRENEVRVHR CCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH ANALKTAREYLAETRRVAAQDSATAREQIYRNLRDTLTEQAAELSTSAQRNKEASARSIK HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATWESRRARLAAVEAEVARLRSLVGTAGAAGTVSTAGTADTGMAP HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TGPSGDSRSTQFPPPPDAIRLLDTVVAEAARRRRADLQARLAGERGRLETSTCLVAVVG CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH EFKKGKGTLINALLDMRVCGTDPVATTLVPTLVRYAPRATATLRRAAPASDGSADSAAPP HHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCC STRPTDEPVTITALHEVTQAAAAEGRGASITTVTGAEIGIPRRLLESGLLLLDTPGLNGG CCCCCCCCEEEHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHCCCEEEECCCCCCC LADGRATATLRAAAGADAVVFVSDASQELTAPELELLRRLVRLCPAVVLALAKVDVYPHW CCCCCHHHEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHH RRIRDTNLAHLRRSRLELPIFPLAAPLRHHALRAGRSDLDGESGYPALAAILRDDIVGGR HHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCH RARLEKIAAEAATDALGQMLAELETERATLADPAAARELRAKLEEAEQRAKGMSEAAATW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH RRVLGDRSQDMTARVRDDLDNRLRNLESAVARRIETSEPARDWDDLRGWLYRQTNDALLT HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHH HRMMIRSEAEALVTAVTREFEADSERVRALLDAATGLPLGTITEGHDPEFQRVGGVDLLA HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHHHH QGARGGGIGLMIVSVGGTVASIAGFAAASVLLAPVGIGVVVVLGRRTIASIRENEVRVHR CCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH ANALKTAREYLAETRRVAAQDSATAREQIYRNLRDTLTEQAAELSTSAQRNKEASARSIK HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATWESRRARLAAVEAEVARLRSLVGTAGAAGTVSTAGTADTGMAP HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]