| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158315574
Identifier: 158315574
GI number: 158315574
Start: 4485921
End: 4486907
Strand: Reverse
Name: 158315574
Synonym: Franean1_3783
Alternate gene names: NA
Gene position: 4486907-4485921 (Counterclockwise)
Preceding gene: 158315575
Following gene: 158315567
Centisome position: 49.95
GC content: 73.45
Gene sequence:
>987_bases ATGGCGGATCACCGGAGTCCCAGCCGCACGCGGGCGTACGAGGGGCGCCCGCTGGCCCGGCCCGACGAGGAGATCGTTGA CCAGGGCCTCGCCTTCGACGTCGGCACACTGCTGAGCCGGCGGCGGATGCTGGCGTTCTTCGGCCTCGGCGCCGCGTCGG CCGGCCTGGCGGCCTGCGGCTTGGACTCCGCCGGATCCACTGCCTCAGCCACCTCGGGGACGTCCGCCTCGGCGGCCTCG GCCGCGACGACGTCGGCCACGATCGGCGCGGCGGCCGGGGAGATCCCCGAGGAGACCGCGGGCCCCTACCCGGGCGACGG GTCCAACGGGCCGGACGTCCTCGAGCAGAGCGGTGTGGTCCGCAGTGACATCCGGTCCAGCTTCGGCGACTCGACCGGTA CCGCCGAAGGCGTCCCCATGACGCTGGCGCTGACGGTCCGCGACCTCGCGAACAGCGGCACGCCCTTCGCCGGGGTGGCC GTGTACGTGTGGCACTGCGACCGAGAGGGCCGCTACTCGCTGTACTCCGACGGCGTCACCGACCAGAACTACCTGCGCGG GGTCCAGGTCGCCGACTCCGCCGGCATGGTCCGTTTCACCAGCGTCTTCCCGGCGTGCTACTCGGGACGCTGGCCGCACG TCCACTTCGAGGTCTATCCCGACCAGGCCAGCATCACCGACTCGTCCAAGGCCATCGCCACCTCGCAGCTCGCGCTGCCG CAGGACGTCTGCGCCAAGGTCTTCACGCAGCCGGGCTACGAGGCGTCCGTGCGCAACCTGGCGCAGGTCAGCCTCGACAG CGACGGTGTCTTCGGGGACGACGGGGCTGCCAGCCAGCTCGCCACCGTCACCGGTGATGTCACCGGCGGCTACGCGGTCT CTCTCGCCTTGGGCGTCGACACGTCGACGGCCGCGGGCGGCGGTCAGATCTCCGGCGGCGGCGCGCCGGGCGGCGCACCC GGGGGCCGGGCGCCTGGCGGGCGGTGA
Upstream 100 bases:
>100_bases CCGCCCACGCACAGGTGGTGCACAGGGAACGCACAGCGTAGGCATCGCCGGGCCCGCCATGATCGAGCCATCAGGTCAGC CGATCGCAGATGGAGGGCAC
Downstream 100 bases:
>100_bases CAGCGCGGCCGGCCGCTCCCCTAAGCCCGCCGGATCAGCCGCGCAGCTCCCAGCCGTTGCCGGCGGGATCGCGGCAGATC ACGATCCGCCGGCCGTCGAA
Product: intradiol ring-cleavage dioxygenase
Products: NA
Alternate protein names: Protocatechuate Dioxygenase; Dioxygenase; Twin-Arginine Translocation Pathway Signal; Protocatechuate 3 4-Dioxygenase; Dioxygenase Subfamily Protein; Protocatechuate 3 4-Dioxygenase Beta Subunit Like Protein; Intradiol-Dioxygenase-Like Protein; Protocatechuate 3 4-Dioxygenase Beta Subunit; Protocatechuate 3 4-Dioxygenase Subunit Beta; Catechol 1 2-Dioxygenase; Intradiol Dioxygenase
Number of amino acids: Translated: 328; Mature: 327
Protein sequence:
>328_residues MADHRSPSRTRAYEGRPLARPDEEIVDQGLAFDVGTLLSRRRMLAFFGLGAASAGLAACGLDSAGSTASATSGTSASAAS AATTSATIGAAAGEIPEETAGPYPGDGSNGPDVLEQSGVVRSDIRSSFGDSTGTAEGVPMTLALTVRDLANSGTPFAGVA VYVWHCDREGRYSLYSDGVTDQNYLRGVQVADSAGMVRFTSVFPACYSGRWPHVHFEVYPDQASITDSSKAIATSQLALP QDVCAKVFTQPGYEASVRNLAQVSLDSDGVFGDDGAASQLATVTGDVTGGYAVSLALGVDTSTAAGGGQISGGGAPGGAP GGRAPGGR
Sequences:
>Translated_328_residues MADHRSPSRTRAYEGRPLARPDEEIVDQGLAFDVGTLLSRRRMLAFFGLGAASAGLAACGLDSAGSTASATSGTSASAAS AATTSATIGAAAGEIPEETAGPYPGDGSNGPDVLEQSGVVRSDIRSSFGDSTGTAEGVPMTLALTVRDLANSGTPFAGVA VYVWHCDREGRYSLYSDGVTDQNYLRGVQVADSAGMVRFTSVFPACYSGRWPHVHFEVYPDQASITDSSKAIATSQLALP QDVCAKVFTQPGYEASVRNLAQVSLDSDGVFGDDGAASQLATVTGDVTGGYAVSLALGVDTSTAAGGGQISGGGAPGGAP GGRAPGGR >Mature_327_residues ADHRSPSRTRAYEGRPLARPDEEIVDQGLAFDVGTLLSRRRMLAFFGLGAASAGLAACGLDSAGSTASATSGTSASAASA ATTSATIGAAAGEIPEETAGPYPGDGSNGPDVLEQSGVVRSDIRSSFGDSTGTAEGVPMTLALTVRDLANSGTPFAGVAV YVWHCDREGRYSLYSDGVTDQNYLRGVQVADSAGMVRFTSVFPACYSGRWPHVHFEVYPDQASITDSSKAIATSQLALPQ DVCAKVFTQPGYEASVRNLAQVSLDSDGVFGDDGAASQLATVTGDVTGGYAVSLALGVDTSTAAGGGQISGGGAPGGAPG GRAPGGR
Specific function: Unknown
COG id: COG3485
COG function: function code Q; Protocatechuate 3,4-dioxygenase beta subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33044; Mature: 32913
Theoretical pI: Translated: 4.42; Mature: 4.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADHRSPSRTRAYEGRPLARPDEEIVDQGLAFDVGTLLSRRRMLAFFGLGAASAGLAACG CCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHCCHHHHC LDSAGSTASATSGTSASAASAATTSATIGAAAGEIPEETAGPYPGDGSNGPDVLEQSGVV CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCHHHHHHCCCH RSDIRSSFGDSTGTAEGVPMTLALTVRDLANSGTPFAGVAVYVWHCDREGRYSLYSDGVT HHHHHHHCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCEEEEEEECCCCCCEEEECCCCC DQNYLRGVQVADSAGMVRFTSVFPACYSGRWPHVHFEVYPDQASITDSSKAIATSQLALP CHHHHCCEEEECCCCCEEEHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHCCC QDVCAKVFTQPGYEASVRNLAQVSLDSDGVFGDDGAASQLATVTGDVTGGYAVSLALGVD HHHHHHHHCCCCHHHHHHHHHHEECCCCCCCCCCCCHHHEEEEECCCCCCEEEEEEEECC TSTAAGGGQISGGGAPGGAPGGRAPGGR CCCCCCCCEECCCCCCCCCCCCCCCCCC >Mature Secondary Structure ADHRSPSRTRAYEGRPLARPDEEIVDQGLAFDVGTLLSRRRMLAFFGLGAASAGLAACG CCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHCCHHHHC LDSAGSTASATSGTSASAASAATTSATIGAAAGEIPEETAGPYPGDGSNGPDVLEQSGVV CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCHHHHHHCCCH RSDIRSSFGDSTGTAEGVPMTLALTVRDLANSGTPFAGVAVYVWHCDREGRYSLYSDGVT HHHHHHHCCCCCCCCCCCCEEEEEEEHHHHCCCCCCCCEEEEEEECCCCCCEEEECCCCC DQNYLRGVQVADSAGMVRFTSVFPACYSGRWPHVHFEVYPDQASITDSSKAIATSQLALP CHHHHCCEEEECCCCCEEEHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHCCC QDVCAKVFTQPGYEASVRNLAQVSLDSDGVFGDDGAASQLATVTGDVTGGYAVSLALGVD HHHHHHHHCCCCHHHHHHHHHHEECCCCCCCCCCCCHHHEEEEECCCCCCEEEEEEEECC TSTAAGGGQISGGGAPGGAPGGRAPGGR CCCCCCCCEECCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA